Wall clock time and date at job start Tue Mar 31 2020 18:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46965 * 2 1 4 4 C 1.53004 * 109.46816 * 119.99482 * 2 1 3 5 5 C 1.52998 * 109.46871 * 185.00108 * 4 2 1 6 6 C 1.50699 * 109.46989 * 179.97438 * 5 4 2 7 7 C 1.34514 * 125.79043 * 90.00015 * 6 5 4 8 8 C 1.41381 * 106.84628 * 180.02562 * 7 6 5 9 9 C 1.34516 * 106.83823 * 359.97438 * 8 7 6 10 10 O 1.34303 * 125.79333 * 269.69526 * 6 5 4 11 11 N 1.46496 * 109.47629 * 239.99334 * 2 1 3 12 12 C 1.34783 * 119.99968 * 85.00093 * 11 2 1 13 13 O 1.21582 * 119.99862 * 0.02562 * 12 11 2 14 14 N 1.34773 * 119.99992 * 180.27764 * 12 11 2 15 15 C 1.46501 * 119.99741 * 179.72300 * 14 12 11 16 16 C 1.53045 * 109.46130 * 275.02821 * 15 14 12 17 17 C 1.53192 * 109.30959 * 178.60622 * 16 15 14 18 18 N 1.46920 * 108.76934 * 54.65030 * 17 16 15 19 19 C 1.36948 * 120.62638 * 126.35968 * 18 17 16 20 20 H 1.07999 * 120.00179 * 331.86484 * 19 18 17 21 21 C 1.38818 * 119.99536 * 151.86035 * 19 18 17 22 22 N 1.31618 * 119.99918 * 343.07486 * 21 19 18 23 23 Si 1.86796 * 119.99462 * 163.07275 * 21 19 18 24 24 H 1.48500 * 109.47103 * 60.00469 * 23 21 19 25 25 H 1.48500 * 109.46746 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47572 * 299.99994 * 23 21 19 27 27 C 1.46926 * 118.74412 * 306.38745 * 18 17 16 28 28 C 1.53041 * 109.45757 * 154.97538 * 15 14 12 29 29 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47400 * 300.00676 * 1 2 3 31 31 H 1.09004 * 109.46519 * 60.00706 * 1 2 3 32 32 H 1.08998 * 109.47279 * 304.99948 * 4 2 1 33 33 H 1.08995 * 109.47001 * 65.00193 * 4 2 1 34 34 H 1.08998 * 109.47547 * 300.00127 * 5 4 2 35 35 H 1.09002 * 109.47629 * 60.00308 * 5 4 2 36 36 H 1.08001 * 126.58097 * 0.03764 * 7 6 5 37 37 H 1.07993 * 126.58267 * 179.97438 * 8 7 6 38 38 H 1.08001 * 125.79437 * 179.97438 * 9 8 7 39 39 H 0.96993 * 120.00353 * 265.00431 * 11 2 1 40 40 H 0.97002 * 120.00111 * 359.72434 * 14 12 11 41 41 H 1.09001 * 109.46383 * 35.00415 * 15 14 12 42 42 H 1.09003 * 109.49215 * 298.56334 * 16 15 14 43 43 H 1.08999 * 109.49529 * 58.66566 * 16 15 14 44 44 H 1.09005 * 109.59649 * 294.86705 * 17 16 15 45 45 H 1.09001 * 109.70397 * 174.50933 * 17 16 15 46 46 H 0.96999 * 119.99312 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.58089 * 293.81923 * 27 18 17 48 48 H 1.08992 * 109.70332 * 173.46173 * 27 18 17 49 49 H 1.08999 * 109.49927 * 301.33600 * 28 15 14 50 50 H 1.09002 * 109.50131 * 61.40027 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3138 6 6 4.0669 -1.3229 2.5447 7 6 4.4188 -2.6192 2.6168 8 6 4.8262 -2.8598 3.9491 9 6 4.6994 -1.6958 4.6114 10 8 4.2446 -0.7672 3.7544 11 7 2.0184 -0.6907 -1.1960 12 6 2.1472 -0.0184 -2.3571 13 8 1.8585 1.1613 -2.4117 14 7 2.5912 -0.6552 -3.4588 15 6 2.7255 0.0741 -4.7223 16 6 1.3790 0.0859 -5.4497 17 6 1.5145 0.8789 -6.7534 18 7 2.6194 0.3123 -7.5387 19 6 2.4245 -0.0773 -8.8370 20 1 1.4479 -0.4047 -9.1618 21 6 3.4823 -0.0514 -9.7356 22 7 4.5652 0.6429 -9.4573 23 14 3.3686 -1.0021 -11.3395 24 1 2.2144 -0.5036 -12.1297 25 1 4.6193 -0.8120 -12.1172 26 1 3.1816 -2.4460 -11.0470 27 6 3.9372 0.1710 -6.9045 28 6 3.7744 -0.6138 -5.5990 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2058 34 1 3.9994 -1.0727 0.4262 35 1 3.8531 0.4371 1.3575 36 1 4.3949 -3.3384 1.8114 37 1 5.1726 -3.7978 4.3568 38 1 4.9282 -1.5345 5.6545 39 1 2.2491 -1.6318 -1.1524 40 1 2.8220 -1.5964 -3.4151 41 1 3.0374 1.0985 -4.5189 42 1 1.0786 -0.9373 -5.6756 43 1 0.6269 0.5549 -4.8152 44 1 1.7264 1.9236 -6.5255 45 1 0.5880 0.8100 -7.3234 46 1 5.3045 0.6607 -10.0851 47 1 4.3466 1.1580 -6.6890 48 1 4.6107 -0.3661 -7.5722 49 1 4.7275 -0.6429 -5.0709 50 1 3.4515 -1.6305 -5.8230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:48 Heat of formation + Delta-G solvation = -29.261630 kcal Electronic energy + Delta-G solvation = -28689.835752 eV Core-core repulsion = 24717.946233 eV Total energy + Delta-G solvation = -3971.889519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.43863 -41.22742 -39.25762 -37.62947 -35.87874 -34.43513 -33.94089 -33.45250 -32.05520 -31.53608 -30.54843 -28.86624 -26.87060 -25.04915 -24.02035 -23.72559 -22.63622 -22.18936 -21.58983 -21.21155 -21.01505 -19.41167 -18.57068 -18.19832 -17.54384 -16.91771 -16.84354 -16.24379 -16.15120 -15.71225 -15.42408 -15.33310 -15.23950 -14.95375 -14.79079 -14.53848 -14.28247 -14.04401 -13.81476 -13.69628 -13.42029 -13.20032 -13.13371 -12.99554 -12.88012 -12.56333 -12.52902 -12.46373 -12.20503 -12.11284 -12.01797 -11.85252 -11.69660 -11.53737 -11.34643 -11.12584 -10.81103 -10.53828 -10.24962 -9.69890 -9.31057 -8.69426 -7.86557 -5.32274 0.84455 1.49681 1.51198 1.58613 1.74571 1.77521 2.15900 2.26770 2.53127 3.27275 3.37812 3.61474 3.68656 3.93552 3.96856 4.03461 4.10146 4.14543 4.20248 4.35939 4.37698 4.45795 4.48631 4.59995 4.67320 4.68142 4.81566 4.84216 4.87132 4.88837 4.99155 5.00583 5.08145 5.09352 5.12505 5.18559 5.20191 5.30733 5.31905 5.36064 5.48852 5.64439 5.65887 5.66464 5.68736 5.72283 6.13118 6.26148 6.40213 7.15682 7.22627 7.71129 7.85303 8.38458 9.20402 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.001946 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.207665 B =14386.926187 C =15197.132434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.106 4.106 5 C -0.038 4.038 6 C -0.023 4.023 7 C -0.222 4.222 8 C -0.228 4.228 9 C -0.051 4.051 10 O -0.197 6.197 11 N -0.727 5.727 12 C 0.700 3.300 13 O -0.636 6.636 14 N -0.728 5.728 15 C 0.183 3.817 16 C -0.122 4.122 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.264 4.264 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.178 3.822 28 C -0.127 4.127 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.231 0.769 39 H 0.410 0.590 40 H 0.409 0.591 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.005 0.995 45 H 0.056 0.944 46 H 0.251 0.749 47 H -0.007 1.007 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -10.042 28.991 30.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.075 4.075 6 C -0.073 4.073 7 C -0.241 4.241 8 C -0.247 4.247 9 C -0.118 4.118 10 O -0.094 6.094 11 N -0.384 5.384 12 C 0.400 3.600 13 O -0.518 6.518 14 N -0.382 5.382 15 C 0.077 3.923 16 C -0.163 4.163 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.798 3.202 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.052 3.948 28 C -0.167 4.167 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.248 0.752 39 H 0.247 0.753 40 H 0.245 0.755 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.023 0.977 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.672 -8.646 28.919 30.302 hybrid contribution 0.496 -0.936 -1.090 1.520 sum -2.176 -9.582 27.829 29.513 Atomic orbital electron populations 1.22147 0.94970 1.02742 1.01968 1.20798 0.94075 0.96533 0.82842 0.91473 1.21802 0.93415 1.02487 0.96731 1.20164 0.96198 1.00515 0.90654 1.22726 1.04931 0.93514 0.86142 1.21919 1.06883 0.96256 0.99056 1.22186 1.07529 1.00522 0.94486 1.24721 1.02912 0.87106 0.97025 1.84021 1.66004 1.39983 1.19361 1.45090 1.71276 1.14109 1.07919 1.16166 0.77992 0.84700 0.81128 1.90899 1.58746 1.16701 1.85417 1.45128 1.70780 1.14233 1.08099 1.20440 0.95108 0.95164 0.81594 1.22170 0.97078 1.00800 0.96227 1.20966 0.91481 0.93949 0.91789 1.44336 1.07001 1.72031 1.09818 1.19488 0.96776 1.36504 0.86645 0.91519 1.25832 0.97769 1.00056 1.00925 1.70183 1.07773 1.42265 1.37919 0.85310 0.76547 0.78985 0.79389 1.20355 1.22094 1.20079 1.20570 0.87295 0.95582 0.91377 1.22246 0.98148 1.00035 0.96230 0.91113 0.90300 0.94681 0.89326 0.89153 0.88090 0.90787 0.82241 0.81855 0.75247 0.75296 0.75466 0.92808 0.91603 0.92488 0.97657 0.92504 0.94020 0.98857 0.91828 0.90536 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 2 C 0.16 2.63 2.57 44.99 0.12 2.75 16 3 H 0.07 1.45 7.58 -2.39 -0.02 1.43 16 4 C -0.11 -1.14 4.74 30.59 0.14 -1.00 16 5 C -0.04 -0.50 5.63 29.85 0.17 -0.33 16 6 C -0.02 -0.37 6.58 24.83 0.16 -0.21 16 7 C -0.22 -3.21 10.81 22.19 0.24 -2.97 16 8 C -0.23 -2.98 10.91 22.19 0.24 -2.74 16 9 C -0.05 -0.64 12.09 66.97 0.81 0.17 16 10 O -0.20 -3.45 10.65 -2.52 -0.03 -3.47 16 11 N -0.73 -12.54 4.53 -457.82 -2.08 -14.61 16 12 C 0.70 19.10 8.50 179.05 1.52 20.62 16 13 O -0.64 -23.87 15.67 -3.97 -0.06 -23.93 16 14 N -0.73 -18.56 5.08 -457.68 -2.33 -20.89 16 15 C 0.18 6.22 2.42 45.02 0.11 6.33 16 16 C -0.12 -4.44 5.65 30.67 0.17 -4.26 16 17 C 0.14 6.36 6.52 86.36 0.56 6.93 16 18 N -0.61 -30.94 2.99 -699.10 -2.09 -33.03 16 19 C -0.26 -14.56 9.58 84.03 0.81 -13.75 16 20 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 21 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 22 N -0.94 -55.35 11.19 21.65 0.24 -55.11 16 23 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.18 8.54 5.30 86.36 0.46 9.00 16 28 C -0.13 -4.48 5.55 30.67 0.17 -4.31 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 1.18 7.75 -2.39 -0.02 1.16 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.23 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.41 4.29 8.62 -92.71 -0.80 3.50 16 40 H 0.41 7.51 8.62 -92.71 -0.80 6.71 16 41 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 42 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 47 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 48 H 0.06 3.40 6.06 -2.39 -0.01 3.38 16 49 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -74.09 404.47 1.81 -72.28 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.66 Total: 20.24 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.78 Total: 11.94 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -6.25 Total: -123.63 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.09 Total: -27.41 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.09 1.81 -72.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.016 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds