Wall clock time and date at job start Tue Mar 31 2020 19:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47015 * 2 1 4 4 C 1.50699 * 109.47337 * 119.99805 * 2 1 3 5 5 H 1.07993 * 120.00094 * 119.99349 * 4 2 1 6 6 C 1.37873 * 119.99712 * 300.00511 * 4 2 1 7 7 N 1.31510 * 120.00590 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99833 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47051 * 269.99690 * 8 6 4 10 10 H 1.48499 * 109.46613 * 29.99769 * 8 6 4 11 11 H 1.48496 * 109.47143 * 149.99440 * 8 6 4 12 12 C 1.50697 * 109.47346 * 240.00045 * 2 1 3 13 13 O 1.21285 * 120.00214 * 261.47208 * 12 2 1 14 14 N 1.34779 * 120.00091 * 81.46655 * 12 2 1 15 15 C 1.46929 * 120.62936 * 5.22397 * 14 12 2 16 16 C 1.53620 * 108.54480 * 126.36618 * 15 14 12 17 17 C 1.53040 * 109.24191 * 54.85166 * 16 15 14 18 18 C 1.53040 * 109.54187 * 298.51073 * 17 16 15 19 19 C 1.46923 * 120.63101 * 185.49633 * 14 12 2 20 20 H 1.09003 * 109.59119 * 113.65875 * 19 14 12 21 21 C 1.52999 * 109.58972 * 353.37473 * 19 14 12 22 22 N 1.46504 * 109.46883 * 67.36383 * 21 19 14 23 23 C 1.34779 * 119.99981 * 174.44663 * 22 21 19 24 24 O 1.21281 * 120.00243 * 0.02562 * 23 22 21 25 25 C 1.50697 * 119.99892 * 180.02562 * 23 22 21 26 26 H 1.09002 * 109.47250 * 300.00039 * 25 23 22 27 27 C 1.53004 * 109.47377 * 59.99878 * 25 23 22 28 28 C 1.52999 * 109.47407 * 180.02562 * 25 23 22 29 29 C 1.47197 * 109.47542 * 175.00156 * 28 25 23 30 30 N 8.22178 * 72.53689 * 185.68506 * 2 1 3 31 31 H 1.09006 * 109.46873 * 57.65189 * 1 2 3 32 32 H 1.08996 * 109.47182 * 177.64960 * 1 2 3 33 33 H 1.09002 * 109.46758 * 297.65786 * 1 2 3 34 34 H 0.96998 * 120.00478 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.57833 * 246.19496 * 15 14 12 36 36 H 1.08993 * 109.58772 * 6.61814 * 15 14 12 37 37 H 1.09002 * 109.63368 * 294.86047 * 16 15 14 38 38 H 1.08997 * 109.45846 * 174.73905 * 16 15 14 39 39 H 1.09001 * 109.46097 * 178.49258 * 17 16 15 40 40 H 1.09000 * 109.44950 * 58.52592 * 17 16 15 41 41 H 1.08999 * 109.49607 * 301.41816 * 18 17 16 42 42 H 1.09001 * 109.52616 * 181.33462 * 18 17 16 43 43 H 1.08997 * 109.47505 * 187.36553 * 21 19 14 44 44 H 1.09000 * 109.47555 * 307.36967 * 21 19 14 45 45 H 0.97000 * 120.00249 * 354.45408 * 22 21 19 46 46 H 1.09004 * 109.46521 * 60.00346 * 27 25 23 47 47 H 1.08998 * 109.47556 * 179.97438 * 27 25 23 48 48 H 1.08997 * 109.47139 * 300.00361 * 27 25 23 49 49 H 1.09004 * 109.47288 * 295.00463 * 28 25 23 50 50 H 1.09003 * 109.46763 * 54.99493 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4826 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 1.3428 -2.1616 4.4119 10 1 3.6294 -1.7581 3.7122 11 1 2.4866 -0.1412 5.1122 12 6 2.0324 -0.7104 -1.2304 13 8 2.3814 -1.8699 -1.1613 14 7 2.0938 -0.0573 -2.4078 15 6 1.7836 1.3768 -2.4854 16 6 2.9613 2.0955 -3.1609 17 6 3.2431 1.4396 -4.5146 18 6 3.6311 -0.0256 -4.3026 19 6 2.4663 -0.7671 -3.6391 20 1 1.6136 -0.7941 -4.3176 21 6 2.8956 -2.1954 -3.2978 22 7 1.7382 -2.9500 -2.8107 23 6 1.8526 -4.2682 -2.5541 24 8 2.9138 -4.8296 -2.7260 25 6 0.6618 -5.0444 -2.0536 26 1 0.3230 -4.6206 -1.1083 27 6 -0.4680 -4.9648 -3.0823 28 6 1.0583 -6.5071 -1.8430 29 6 -0.0682 -7.2393 -1.2417 30 7 -0.9373 -7.8043 -0.7769 31 1 -0.3633 0.5499 -0.8682 32 1 -0.3633 -1.0268 -0.0421 33 1 -0.3633 0.4771 0.9103 34 1 0.7094 1.1618 3.4843 35 1 0.8772 1.5232 -3.0728 36 1 1.6388 1.7742 -1.4809 37 1 3.8466 2.0213 -2.5294 38 1 2.7084 3.1451 -3.3108 39 1 4.0609 1.9639 -5.0090 40 1 2.3494 1.4922 -5.1364 41 1 4.5100 -0.0798 -3.6603 42 1 3.8546 -0.4861 -5.2649 43 1 3.2946 -2.6779 -4.1901 44 1 3.6636 -2.1692 -2.5248 45 1 0.8895 -2.5010 -2.6730 46 1 -0.1291 -5.3888 -4.0276 47 1 -1.3291 -5.5267 -2.7205 48 1 -0.7504 -3.9228 -3.2319 49 1 1.3128 -6.9564 -2.8030 50 1 1.9208 -6.5576 -1.1783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871469175.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:06 Heat of formation + Delta-G solvation = -30.096551 kcal Electronic energy + Delta-G solvation = -30975.795485 eV Core-core repulsion = 27003.869761 eV Total energy + Delta-G solvation = -3971.925724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48422 -39.24829 -36.93801 -36.85623 -34.88992 -34.16533 -33.53501 -32.51346 -31.41566 -30.14716 -28.23706 -26.65525 -25.23585 -24.64613 -23.40457 -23.03860 -21.43919 -20.45151 -19.78289 -18.40105 -17.74973 -16.67972 -16.28539 -16.02001 -15.75025 -15.45826 -15.44134 -14.73285 -14.67540 -14.40965 -14.20699 -14.04075 -13.58484 -13.47729 -13.20928 -13.00034 -12.82106 -12.60963 -12.55222 -12.38398 -12.33402 -12.09016 -12.02935 -11.90091 -11.51099 -11.15814 -11.14271 -11.05513 -11.03558 -10.94323 -10.73369 -10.71722 -10.59106 -10.56326 -10.29712 -10.00879 -9.43193 -9.03123 -8.62270 -8.47025 -8.09182 -7.86819 -6.09250 -4.12500 2.68705 2.79144 3.04210 3.29822 3.36367 3.39674 3.47194 3.52167 3.63981 4.10892 4.41438 4.66485 4.68884 4.84146 4.85127 4.88598 4.98556 5.15157 5.22409 5.24716 5.29598 5.35670 5.50080 5.52105 5.58270 5.69809 5.71607 5.74252 5.82781 5.85237 5.92140 5.96780 6.03476 6.05362 6.07303 6.15094 6.31296 6.46077 6.56156 6.74532 6.86044 6.90286 7.05957 7.35393 7.54393 7.69462 7.90106 7.90822 8.03759 8.30249 8.63960 8.94246 9.14146 9.53270 10.97782 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007186 B = 0.005439 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3895.560133 B = 5146.366904 C = 8077.524382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.032 3.968 3 H 0.046 0.954 4 C -0.497 4.497 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.510 3.490 13 O -0.520 6.520 14 N -0.625 5.625 15 C 0.110 3.890 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.126 4.126 19 C 0.133 3.867 20 H 0.067 0.933 21 C 0.138 3.862 22 N -0.681 5.681 23 C 0.529 3.471 24 O -0.558 6.558 25 C -0.109 4.109 26 H 0.109 0.891 27 C -0.146 4.146 28 C -0.008 4.008 29 C 0.213 3.787 30 N -0.444 5.444 31 H 0.012 0.988 32 H 0.029 0.971 33 H 0.093 0.907 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.395 0.605 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.113 0.887 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 0.387 -16.451 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.536 4.536 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.213 1.213 12 C 0.302 3.698 13 O -0.394 6.394 14 N -0.363 5.363 15 C -0.014 4.014 16 C -0.175 4.175 17 C -0.153 4.153 18 C -0.165 4.165 19 C 0.029 3.971 20 H 0.085 0.915 21 C 0.014 3.986 22 N -0.329 5.329 23 C 0.315 3.685 24 O -0.437 6.437 25 C -0.131 4.131 26 H 0.127 0.873 27 C -0.203 4.203 28 C -0.048 4.048 29 C -0.104 4.104 30 N -0.121 5.121 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.229 0.771 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.131 0.869 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.152 -1.377 -15.671 15.732 hybrid contribution 0.167 0.353 0.849 0.935 sum 0.016 -1.024 -14.821 14.857 Atomic orbital electron populations 1.21701 0.96401 0.99343 1.01343 1.18885 0.94022 0.96606 0.89368 0.93597 1.21071 1.31018 1.12493 0.89008 0.91204 1.24910 0.95101 0.94994 0.99037 1.69846 1.37052 1.22985 1.23570 0.86517 0.79492 0.79325 0.82284 1.20672 1.19805 1.21315 1.22007 0.76377 0.87347 0.84104 1.90696 1.47089 1.17410 1.84216 1.48419 1.70954 1.09674 1.07226 1.21817 0.96243 0.80444 1.02851 1.22014 0.99624 0.99203 0.96675 1.21473 1.01239 0.95298 0.97285 1.21865 0.98319 0.95699 1.00653 1.21370 0.96895 0.91668 0.87191 0.91506 1.21378 0.90495 0.88310 0.98399 1.45697 1.13643 1.08230 1.65368 1.19865 0.88935 0.82292 0.77459 1.90652 1.29379 1.69757 1.53933 1.21209 0.95645 0.94164 1.02125 0.87293 1.21833 0.97164 1.02895 0.98427 1.19091 0.91299 0.91887 1.02573 1.29220 0.94347 0.93614 0.93254 1.81213 1.11141 1.09955 1.09777 0.96934 0.95196 0.88810 0.92942 0.92317 0.88235 0.91320 0.91130 0.91935 0.92036 0.91099 0.91108 0.92592 0.89182 0.77084 0.91699 0.91843 0.91643 0.86868 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.95 37.16 0.33 -2.42 16 2 C 0.03 0.72 1.81 -92.92 -0.17 0.55 16 3 H 0.05 1.07 6.22 -51.93 -0.32 0.75 16 4 C -0.50 -13.14 8.34 -34.44 -0.29 -13.43 16 5 H 0.07 1.97 6.96 -52.49 -0.37 1.60 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.03 11.30 55.43 0.63 -23.41 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.51 9.88 6.13 -10.99 -0.07 9.81 16 13 O -0.52 -10.98 9.36 5.55 0.05 -10.93 16 14 N -0.63 -9.26 2.97 -164.96 -0.49 -9.75 16 15 C 0.11 1.40 5.94 -3.49 -0.02 1.38 16 16 C -0.14 -1.46 6.10 -26.39 -0.16 -1.62 16 17 C -0.12 -1.06 5.88 -26.69 -0.16 -1.21 16 18 C -0.13 -1.31 5.37 -26.61 -0.14 -1.45 16 19 C 0.13 1.63 2.94 -67.60 -0.20 1.43 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 21 C 0.14 2.00 4.29 -4.04 -0.02 1.98 16 22 N -0.68 -9.96 3.02 -60.29 -0.18 -10.14 16 23 C 0.53 7.99 6.82 -10.99 -0.07 7.92 16 24 O -0.56 -10.01 15.91 5.56 0.09 -9.92 16 25 C -0.11 -1.30 2.70 -91.77 -0.25 -1.55 16 26 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 27 C -0.15 -1.39 8.90 37.16 0.33 -1.06 16 28 C -0.01 -0.09 4.53 -29.52 -0.13 -0.22 16 29 C 0.21 2.68 14.40 -20.76 -0.30 2.38 16 30 N -0.44 -6.73 18.54 42.15 0.78 -5.95 16 31 H 0.01 0.21 7.76 -51.93 -0.40 -0.19 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.26 6.01 -51.93 -0.31 1.94 16 34 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.48 5.43 -51.93 -0.28 1.20 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 44 H 0.09 1.65 6.49 -51.93 -0.34 1.32 16 45 H 0.39 5.52 7.07 -40.82 -0.29 5.23 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.61 7.38 -51.93 -0.38 0.22 16 48 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 49 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.12 1.33 7.96 -51.93 -0.41 0.92 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -31.12 393.35 -7.75 -38.87 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.13 Total: 5.03 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.41 Total: 3.99 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.74 Total: -49.25 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.14 Total: -20.85 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.12 -7.75 -38.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871469175.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.775 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds