Wall clock time and date at job start Tue Mar 31 2020 19:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47015 * 2 1 4 4 C 1.50699 * 109.47337 * 119.99805 * 2 1 3 5 5 H 1.07993 * 120.00094 * 119.99349 * 4 2 1 6 6 C 1.37873 * 119.99712 * 300.00511 * 4 2 1 7 7 N 1.31510 * 120.00590 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99833 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47051 * 269.99690 * 8 6 4 10 10 H 1.48499 * 109.46613 * 29.99769 * 8 6 4 11 11 H 1.48496 * 109.47143 * 149.99440 * 8 6 4 12 12 C 1.50697 * 109.47346 * 240.00045 * 2 1 3 13 13 O 1.21285 * 120.00214 * 261.47208 * 12 2 1 14 14 N 1.34779 * 120.00091 * 81.46655 * 12 2 1 15 15 C 1.46929 * 120.62936 * 5.22397 * 14 12 2 16 16 C 1.53620 * 108.54480 * 126.36618 * 15 14 12 17 17 C 1.53040 * 109.24191 * 54.85166 * 16 15 14 18 18 C 1.53040 * 109.54187 * 298.51073 * 17 16 15 19 19 C 1.46923 * 120.63101 * 185.49633 * 14 12 2 20 20 H 1.09003 * 109.59119 * 113.65875 * 19 14 12 21 21 C 1.52999 * 109.58972 * 353.37473 * 19 14 12 22 22 N 1.46504 * 109.46883 * 67.36383 * 21 19 14 23 23 C 1.34779 * 119.99981 * 174.44663 * 22 21 19 24 24 O 1.21281 * 120.00243 * 0.02562 * 23 22 21 25 25 C 1.50697 * 119.99892 * 180.02562 * 23 22 21 26 26 H 1.09002 * 109.47250 * 300.00039 * 25 23 22 27 27 C 1.53004 * 109.47377 * 59.99878 * 25 23 22 28 28 C 1.52999 * 109.47407 * 180.02562 * 25 23 22 29 29 C 1.47197 * 109.47542 * 175.00156 * 28 25 23 30 30 N 8.22178 * 72.53689 * 185.68506 * 2 1 3 31 31 H 1.09006 * 109.46873 * 57.65189 * 1 2 3 32 32 H 1.08996 * 109.47182 * 177.64960 * 1 2 3 33 33 H 1.09002 * 109.46758 * 297.65786 * 1 2 3 34 34 H 0.96998 * 120.00478 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.57833 * 246.19496 * 15 14 12 36 36 H 1.08993 * 109.58772 * 6.61814 * 15 14 12 37 37 H 1.09002 * 109.63368 * 294.86047 * 16 15 14 38 38 H 1.08997 * 109.45846 * 174.73905 * 16 15 14 39 39 H 1.09001 * 109.46097 * 178.49258 * 17 16 15 40 40 H 1.09000 * 109.44950 * 58.52592 * 17 16 15 41 41 H 1.08999 * 109.49607 * 301.41816 * 18 17 16 42 42 H 1.09001 * 109.52616 * 181.33462 * 18 17 16 43 43 H 1.08997 * 109.47505 * 187.36553 * 21 19 14 44 44 H 1.09000 * 109.47555 * 307.36967 * 21 19 14 45 45 H 0.97000 * 120.00249 * 354.45408 * 22 21 19 46 46 H 1.09004 * 109.46521 * 60.00346 * 27 25 23 47 47 H 1.08998 * 109.47556 * 179.97438 * 27 25 23 48 48 H 1.08997 * 109.47139 * 300.00361 * 27 25 23 49 49 H 1.09004 * 109.47288 * 295.00463 * 28 25 23 50 50 H 1.09003 * 109.46763 * 54.99493 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4826 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 1.3428 -2.1616 4.4119 10 1 3.6294 -1.7581 3.7122 11 1 2.4866 -0.1412 5.1122 12 6 2.0324 -0.7104 -1.2304 13 8 2.3814 -1.8699 -1.1613 14 7 2.0938 -0.0573 -2.4078 15 6 1.7836 1.3768 -2.4854 16 6 2.9613 2.0955 -3.1609 17 6 3.2431 1.4396 -4.5146 18 6 3.6311 -0.0256 -4.3026 19 6 2.4663 -0.7671 -3.6391 20 1 1.6136 -0.7941 -4.3176 21 6 2.8956 -2.1954 -3.2978 22 7 1.7382 -2.9500 -2.8107 23 6 1.8526 -4.2682 -2.5541 24 8 2.9138 -4.8296 -2.7260 25 6 0.6618 -5.0444 -2.0536 26 1 0.3230 -4.6206 -1.1083 27 6 -0.4680 -4.9648 -3.0823 28 6 1.0583 -6.5071 -1.8430 29 6 -0.0682 -7.2393 -1.2417 30 7 -0.9373 -7.8043 -0.7769 31 1 -0.3633 0.5499 -0.8682 32 1 -0.3633 -1.0268 -0.0421 33 1 -0.3633 0.4771 0.9103 34 1 0.7094 1.1618 3.4843 35 1 0.8772 1.5232 -3.0728 36 1 1.6388 1.7742 -1.4809 37 1 3.8466 2.0213 -2.5294 38 1 2.7084 3.1451 -3.3108 39 1 4.0609 1.9639 -5.0090 40 1 2.3494 1.4922 -5.1364 41 1 4.5100 -0.0798 -3.6603 42 1 3.8546 -0.4861 -5.2649 43 1 3.2946 -2.6779 -4.1901 44 1 3.6636 -2.1692 -2.5248 45 1 0.8895 -2.5010 -2.6730 46 1 -0.1291 -5.3888 -4.0276 47 1 -1.3291 -5.5267 -2.7205 48 1 -0.7504 -3.9228 -3.2319 49 1 1.3128 -6.9564 -2.8030 50 1 1.9208 -6.5576 -1.1783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871469175.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:05 Heat of formation + Delta-G solvation = -48.108919 kcal Electronic energy + Delta-G solvation = -30976.576560 eV Core-core repulsion = 27003.869761 eV Total energy + Delta-G solvation = -3972.706799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73987 -40.44012 -38.17910 -37.95028 -36.30745 -35.24140 -35.15120 -33.73383 -32.57053 -31.79209 -29.14367 -27.70310 -27.20450 -25.75440 -24.50266 -24.37630 -22.65499 -21.49357 -20.97068 -19.72110 -18.76826 -18.31853 -17.78762 -17.24221 -16.89598 -16.76173 -16.66126 -16.36343 -15.86430 -15.56088 -15.23739 -15.08773 -14.85329 -14.57169 -14.51431 -14.27757 -14.09571 -13.84256 -13.69462 -13.46943 -13.45155 -13.33960 -13.14111 -12.99561 -12.94641 -12.83659 -12.65613 -12.44945 -12.24525 -12.07138 -12.02845 -12.01652 -11.96938 -11.75816 -11.51318 -11.42332 -10.94248 -10.65417 -10.49920 -9.79569 -9.61490 -9.10714 -8.13724 -6.21765 1.36491 1.39420 1.48689 1.64286 1.76352 1.83399 2.11075 2.24215 2.43980 2.47429 3.09057 3.16629 3.66585 3.71699 3.93951 3.96569 4.01474 4.07405 4.22149 4.31546 4.33664 4.37433 4.44136 4.58746 4.71125 4.74131 4.76834 4.77304 4.85266 4.90198 4.95402 5.02308 5.05652 5.05991 5.09051 5.17087 5.18124 5.24398 5.27982 5.30923 5.52927 5.55590 5.70846 5.76213 5.87196 6.04532 6.27653 6.52816 6.69497 6.74149 6.86746 7.44344 7.46704 7.67564 8.91184 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007186 B = 0.005439 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3895.560133 B = 5146.366904 C = 8077.524382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.029 3.971 3 H 0.035 0.965 4 C -0.514 4.514 5 H 0.043 0.957 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.511 3.489 13 O -0.545 6.545 14 N -0.616 5.616 15 C 0.104 3.896 16 C -0.133 4.133 17 C -0.109 4.109 18 C -0.124 4.124 19 C 0.136 3.864 20 H 0.099 0.901 21 C 0.141 3.859 22 N -0.677 5.677 23 C 0.523 3.477 24 O -0.590 6.590 25 C -0.103 4.103 26 H 0.094 0.906 27 C -0.139 4.139 28 C -0.002 4.002 29 C 0.240 3.760 30 N -0.488 5.488 31 H 0.046 0.954 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.398 0.602 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.139 0.861 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 1.252 -19.206 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.008 3.992 3 H 0.052 0.948 4 C -0.553 4.553 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.203 1.203 12 C 0.301 3.699 13 O -0.422 6.422 14 N -0.352 5.352 15 C -0.018 4.018 16 C -0.171 4.171 17 C -0.146 4.146 18 C -0.162 4.162 19 C 0.033 3.967 20 H 0.116 0.884 21 C 0.017 3.983 22 N -0.324 5.324 23 C 0.310 3.690 24 O -0.473 6.473 25 C -0.126 4.126 26 H 0.112 0.888 27 C -0.196 4.196 28 C -0.042 4.042 29 C -0.077 4.077 30 N -0.166 5.166 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.233 0.767 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.157 0.843 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.764 -0.461 -18.453 18.475 hybrid contribution 0.424 0.149 1.683 1.742 sum -0.340 -0.312 -16.770 16.776 Atomic orbital electron populations 1.21473 0.95431 0.99003 1.01394 1.18771 0.94813 0.95732 0.89905 0.94762 1.21223 1.30897 1.11991 0.91147 0.93891 1.25438 0.95454 0.95685 1.00964 1.69923 1.37438 1.23494 1.23965 0.85812 0.78549 0.78621 0.80170 1.20553 1.20626 1.20261 1.21345 0.76811 0.86905 0.84821 1.90707 1.48309 1.18334 1.84892 1.48278 1.69585 1.10570 1.06755 1.22001 0.98570 0.78986 1.02289 1.21992 0.97593 1.00452 0.97103 1.21465 1.02819 0.93927 0.96397 1.21885 0.96422 0.96801 1.01141 1.21596 0.98881 0.90072 0.86133 0.88351 1.21289 0.89520 0.90131 0.97350 1.45704 1.13763 1.08173 1.64795 1.20351 0.89268 0.82541 0.76845 1.90629 1.30781 1.70412 1.55430 1.21155 0.95254 0.94134 1.02058 0.88812 1.21812 0.95996 1.03623 0.98203 1.19160 0.90270 0.91189 1.03602 1.29381 0.93723 0.92551 0.92033 1.81238 1.12564 1.11516 1.11296 0.93511 0.95864 0.91655 0.92842 0.89408 0.90812 0.93635 0.88901 0.90293 0.89909 0.93331 0.88465 0.91141 0.93689 0.76669 0.90079 0.91693 0.90936 0.84342 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.88 8.95 71.98 0.64 -4.24 16 2 C 0.03 1.32 1.81 -12.29 -0.02 1.30 16 3 H 0.03 1.65 6.22 -2.39 -0.01 1.64 16 4 C -0.51 -28.12 8.34 25.60 0.21 -27.91 16 5 H 0.04 2.54 6.96 -2.91 -0.02 2.52 16 6 C 0.02 1.29 5.30 84.65 0.45 1.74 16 7 N -0.91 -49.53 11.30 21.45 0.24 -49.29 16 8 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.51 20.01 6.13 87.66 0.54 20.55 16 13 O -0.55 -23.74 9.36 -3.05 -0.03 -23.77 16 14 N -0.62 -17.47 2.97 -794.20 -2.36 -19.82 16 15 C 0.10 2.44 5.94 86.51 0.51 2.95 16 16 C -0.13 -2.50 6.10 30.82 0.19 -2.31 16 17 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 18 C -0.12 -2.20 5.37 30.67 0.16 -2.04 16 19 C 0.14 3.01 2.94 44.98 0.13 3.15 16 20 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 21 C 0.14 3.99 4.29 86.38 0.37 4.36 16 22 N -0.68 -19.34 3.02 -463.06 -1.40 -20.74 16 23 C 0.52 15.65 6.82 87.66 0.60 16.25 16 24 O -0.59 -21.24 15.91 -3.03 -0.05 -21.29 16 25 C -0.10 -2.41 2.70 -11.54 -0.03 -2.44 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 C -0.14 -2.38 8.90 71.98 0.64 -1.74 16 28 C 0.00 -0.04 4.53 28.79 0.13 0.09 16 29 C 0.24 5.87 14.40 89.44 1.29 7.16 16 30 N -0.49 -14.70 18.54 20.01 0.37 -14.33 16 31 H 0.05 1.61 7.76 -2.38 -0.02 1.59 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 3.17 6.01 -2.39 -0.01 3.16 16 34 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 2.15 5.43 -2.39 -0.01 2.14 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 44 H 0.04 1.71 6.49 -2.39 -0.02 1.69 16 45 H 0.40 10.67 7.07 -92.71 -0.66 10.02 16 46 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.06 1.12 7.38 -2.39 -0.02 1.11 16 48 H 0.07 1.15 7.56 -2.39 -0.02 1.13 16 49 H 0.14 2.21 8.14 -2.39 -0.02 2.20 16 50 H 0.11 2.55 7.96 -2.39 -0.02 2.53 16 Total: -1.00 -70.63 393.35 5.09 -65.54 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.29 Total: 21.66 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 6.00 Total: 15.48 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.14 Total: -104.18 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.08 Total: -45.06 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.63 5.09 -65.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871469175.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.430 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds