Wall clock time and date at job start Tue Mar 31 2020 19:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46679 * 2 1 4 4 C 1.50695 * 109.47155 * 239.99916 * 2 1 3 5 5 H 1.08005 * 120.00171 * 240.00112 * 4 2 1 6 6 C 1.37876 * 119.99903 * 59.99734 * 4 2 1 7 7 N 1.31512 * 120.00593 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00126 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47191 * 89.99671 * 8 6 4 10 10 H 1.48502 * 109.47330 * 210.00329 * 8 6 4 11 11 H 1.48503 * 109.46947 * 330.00298 * 8 6 4 12 12 C 1.50702 * 109.47082 * 119.99993 * 2 1 3 13 13 O 1.21276 * 119.99853 * 101.50098 * 12 2 1 14 14 N 1.34782 * 119.99598 * 281.50083 * 12 2 1 15 15 C 1.46921 * 120.63506 * 5.90263 * 14 12 2 16 16 C 1.53188 * 108.77527 * 126.39025 * 15 14 12 17 17 C 1.53041 * 109.31439 * 54.63726 * 16 15 14 18 18 C 1.53040 * 109.53612 * 298.63828 * 17 16 15 19 19 C 1.46924 * 120.62721 * 185.90643 * 14 12 2 20 20 H 1.08996 * 109.70465 * 113.74736 * 19 14 12 21 21 C 1.53007 * 109.58801 * 353.39177 * 19 14 12 22 22 N 1.46500 * 109.46709 * 68.64613 * 21 19 14 23 23 C 1.34781 * 119.99721 * 174.97842 * 22 21 19 24 24 O 1.21281 * 119.99946 * 0.02562 * 23 22 21 25 25 C 1.50699 * 120.00037 * 180.02562 * 23 22 21 26 26 H 1.09004 * 109.47291 * 60.00100 * 25 23 22 27 27 C 1.53004 * 109.47171 * 300.00912 * 25 23 22 28 28 C 1.52997 * 109.47140 * 180.02562 * 25 23 22 29 29 C 1.47208 * 109.46929 * 185.00101 * 28 25 23 30 30 N 8.42537 * 146.06831 * 189.50559 * 2 1 3 31 31 H 1.09006 * 109.47114 * 304.37519 * 1 2 3 32 32 H 1.08998 * 109.47210 * 64.38346 * 1 2 3 33 33 H 1.09003 * 109.47106 * 184.38317 * 1 2 3 34 34 H 0.96993 * 120.00599 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.58232 * 6.60787 * 15 14 12 36 36 H 1.08998 * 109.58879 * 246.18094 * 15 14 12 37 37 H 1.08998 * 109.50081 * 294.68735 * 16 15 14 38 38 H 1.09000 * 109.52632 * 174.60553 * 16 15 14 39 39 H 1.08995 * 109.46385 * 178.61119 * 17 16 15 40 40 H 1.09003 * 109.45481 * 58.65077 * 17 16 15 41 41 H 1.09002 * 109.49335 * 301.40798 * 18 17 16 42 42 H 1.09007 * 109.52283 * 181.32972 * 18 17 16 43 43 H 1.08995 * 109.46845 * 308.65063 * 21 19 14 44 44 H 1.08995 * 109.47333 * 188.64797 * 21 19 14 45 45 H 0.97001 * 120.00327 * 354.98884 * 22 21 19 46 46 H 1.09005 * 109.47108 * 180.02562 * 27 25 23 47 47 H 1.09002 * 109.46917 * 299.99266 * 27 25 23 48 48 H 1.08995 * 109.47591 * 59.99861 * 27 25 23 49 49 H 1.08994 * 109.47350 * 65.00497 * 28 25 23 50 50 H 1.08995 * 109.47192 * 304.99790 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3225 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 6 2.0324 -0.7104 1.2305 13 8 2.4319 -1.8527 1.1505 14 7 2.0375 -0.0762 2.4198 15 6 1.4391 1.2583 2.5592 16 6 0.4227 1.2257 3.7048 17 6 1.1055 0.7075 4.9727 18 6 1.6120 -0.7171 4.7355 19 6 2.6418 -0.7064 3.6015 20 1 3.5204 -0.1404 3.9110 21 6 3.0492 -2.1424 3.2651 22 7 4.1667 -2.1238 2.3180 23 6 4.7616 -3.2774 1.9549 24 8 4.3714 -4.3309 2.4119 25 6 5.9114 -3.2583 0.9810 26 1 6.7252 -2.6602 1.3913 27 6 5.4480 -2.6484 -0.3435 28 6 6.3999 -4.6881 0.7405 29 6 7.5972 -4.6601 -0.1155 30 7 8.5206 -4.6385 -0.7767 31 1 -0.3634 0.5803 0.8482 32 1 -0.3633 0.4443 -0.9266 33 1 -0.3633 -1.0247 0.0785 34 1 0.7089 1.1613 -3.4844 35 1 0.9357 1.5317 1.6318 36 1 2.2185 1.9867 2.7828 37 1 -0.4027 0.5648 3.4402 38 1 0.0412 2.2312 3.8822 39 1 0.3908 0.7065 5.7956 40 1 1.9461 1.3548 5.2228 41 1 0.7753 -1.3596 4.4611 42 1 2.0773 -1.0946 5.6460 43 1 2.2032 -2.6649 2.8187 44 1 3.3539 -2.6566 4.1766 45 1 4.4785 -1.2812 1.9522 46 1 6.2796 -2.6350 -1.0480 47 1 4.6343 -3.2465 -0.7538 48 1 5.0998 -1.6299 -0.1724 49 1 5.6149 -5.2623 0.2484 50 1 6.6464 -5.1533 1.6949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871469177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:09 Heat of formation + Delta-G solvation = -31.294894 kcal Electronic energy + Delta-G solvation = -31236.115134 eV Core-core repulsion = 27264.137446 eV Total energy + Delta-G solvation = -3971.977688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47114 -39.21978 -36.92524 -36.83176 -34.92081 -34.06352 -33.53035 -32.51222 -31.44328 -30.10047 -28.07479 -26.64298 -25.25093 -24.59011 -23.33744 -22.88008 -21.44938 -20.57586 -19.72720 -18.28187 -17.75181 -16.65763 -16.28307 -15.99246 -15.72016 -15.51954 -15.29621 -14.70563 -14.57418 -14.36497 -14.18243 -13.96140 -13.65469 -13.47119 -13.22708 -12.97364 -12.85327 -12.60773 -12.38481 -12.33667 -12.23349 -11.99867 -11.89585 -11.76649 -11.40849 -11.12486 -11.05254 -10.99541 -10.94668 -10.92108 -10.77554 -10.73368 -10.61804 -10.35632 -10.34300 -10.00585 -9.38991 -9.04537 -8.59405 -8.48259 -8.07025 -7.90077 -6.09366 -4.12769 2.71138 2.81309 3.04871 3.28700 3.35792 3.38206 3.48536 3.54839 3.64924 4.13189 4.40104 4.68790 4.76197 4.83865 4.88370 5.00175 5.07696 5.16460 5.24208 5.24902 5.30597 5.39000 5.50994 5.69890 5.71447 5.74186 5.78262 5.82682 5.85310 5.95202 5.99858 6.03916 6.06771 6.15229 6.17010 6.29791 6.46049 6.58151 6.58550 6.79685 6.87961 6.92321 7.05081 7.38405 7.56661 7.71034 7.90967 7.92451 8.04469 8.30675 8.65893 8.93848 9.15390 9.52925 10.97741 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007622 B = 0.005809 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.924485 B = 4819.284721 C = 8041.177955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.033 3.967 3 H 0.044 0.956 4 C -0.496 4.496 5 H 0.073 0.927 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.272 1.272 12 C 0.511 3.489 13 O -0.517 6.517 14 N -0.626 5.626 15 C 0.108 3.892 16 C -0.136 4.136 17 C -0.115 4.115 18 C -0.126 4.126 19 C 0.133 3.867 20 H 0.067 0.933 21 C 0.137 3.863 22 N -0.684 5.684 23 C 0.529 3.471 24 O -0.558 6.558 25 C -0.104 4.104 26 H 0.097 0.903 27 C -0.143 4.143 28 C -0.009 4.009 29 C 0.214 3.786 30 N -0.445 5.445 31 H 0.015 0.985 32 H 0.094 0.906 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.396 0.604 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.116 0.884 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 1.294 14.754 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.062 0.938 4 C -0.534 4.534 5 H 0.091 0.909 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.197 1.197 12 C 0.303 3.697 13 O -0.392 6.392 14 N -0.363 5.363 15 C -0.015 4.015 16 C -0.174 4.174 17 C -0.153 4.153 18 C -0.165 4.165 19 C 0.029 3.971 20 H 0.085 0.915 21 C 0.013 3.987 22 N -0.332 5.332 23 C 0.315 3.685 24 O -0.437 6.437 25 C -0.127 4.127 26 H 0.115 0.885 27 C -0.201 4.201 28 C -0.050 4.050 29 C -0.103 4.103 30 N -0.123 5.123 31 H 0.034 0.966 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.230 0.770 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.134 0.866 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.653 0.059 13.878 14.351 hybrid contribution -0.137 0.268 -0.804 0.859 sum 3.516 0.327 13.074 13.543 Atomic orbital electron populations 1.21801 0.96597 0.99187 1.01660 1.18851 0.94033 0.96519 0.89387 0.93814 1.21078 1.31046 1.12448 0.88848 0.90891 1.24907 0.95154 0.94969 0.98995 1.69845 1.37046 1.23008 1.23524 0.86564 0.79500 0.79351 0.82472 1.20726 1.21412 1.19690 1.22020 0.76532 0.87227 0.83969 1.90677 1.45764 1.17662 1.85060 1.48405 1.60517 1.18667 1.08730 1.21750 0.95612 0.83940 1.00241 1.21932 0.98775 1.01523 0.95197 1.21474 1.00148 0.96066 0.97626 1.21865 0.99258 0.97696 0.97693 1.21363 0.95299 0.93747 0.86711 0.91518 1.21400 0.91495 0.94945 0.90850 1.45675 1.33192 1.08806 1.45553 1.19925 0.83413 0.83899 0.81281 1.90647 1.65976 1.30557 1.56557 1.21205 0.97542 0.96265 0.97671 0.88532 1.21815 1.01678 1.02637 0.93952 1.19119 0.89527 0.98246 0.98083 1.29231 0.94355 0.93059 0.93666 1.81202 1.12187 1.08555 1.10324 0.96623 0.88791 0.95206 0.92970 0.88054 0.92416 0.91425 0.91127 0.91958 0.92010 0.91185 0.91130 0.88967 0.92764 0.77002 0.92556 0.90906 0.90661 0.86564 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.71 37.16 0.32 -2.57 16 2 C 0.03 0.73 1.77 -92.92 -0.16 0.56 16 3 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 4 C -0.50 -12.57 8.35 -34.44 -0.29 -12.86 16 5 H 0.07 1.92 6.91 -52.48 -0.36 1.55 16 6 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 7 N -0.89 -23.74 11.30 55.43 0.63 -23.11 16 8 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.51 9.68 6.23 -10.98 -0.07 9.61 16 13 O -0.52 -10.60 9.39 5.56 0.05 -10.55 16 14 N -0.63 -9.15 2.97 -165.22 -0.49 -9.64 16 15 C 0.11 1.37 5.81 -3.72 -0.02 1.35 16 16 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 17 C -0.12 -1.04 5.88 -26.69 -0.16 -1.20 16 18 C -0.13 -1.29 5.36 -26.61 -0.14 -1.43 16 19 C 0.13 1.62 2.93 -67.60 -0.20 1.42 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 21 C 0.14 1.96 4.28 -4.04 -0.02 1.95 16 22 N -0.68 -10.01 3.07 -60.29 -0.19 -10.20 16 23 C 0.53 8.05 6.83 -10.98 -0.08 7.98 16 24 O -0.56 -10.03 15.91 5.56 0.09 -9.94 16 25 C -0.10 -1.29 2.70 -91.77 -0.25 -1.54 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 C -0.14 -2.10 8.90 37.16 0.33 -1.77 16 28 C -0.01 -0.10 4.53 -29.52 -0.13 -0.24 16 29 C 0.21 2.75 14.40 -20.76 -0.30 2.45 16 30 N -0.45 -6.87 18.54 42.15 0.78 -6.08 16 31 H 0.01 0.28 6.25 -51.93 -0.32 -0.05 16 32 H 0.09 2.27 5.97 -51.93 -0.31 1.96 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.10 1.49 4.36 -51.93 -0.23 1.27 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.66 6.37 -51.93 -0.33 1.33 16 44 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 45 H 0.40 5.57 7.22 -40.82 -0.29 5.28 16 46 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.07 1.18 7.56 -51.93 -0.39 0.79 16 49 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.12 1.11 7.95 -51.93 -0.41 0.70 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -30.07 391.42 -7.71 -37.78 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.04 Total: 6.43 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.42 Total: 3.62 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.73 Total: -49.03 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.14 Total: -20.50 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.07 -7.71 -37.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871469177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.487 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds