Wall clock time and date at job start Tue Mar 31 2020 19:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46679 * 2 1 4 4 C 1.50695 * 109.47155 * 239.99916 * 2 1 3 5 5 H 1.08005 * 120.00171 * 240.00112 * 4 2 1 6 6 C 1.37876 * 119.99903 * 59.99734 * 4 2 1 7 7 N 1.31512 * 120.00593 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00126 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47191 * 89.99671 * 8 6 4 10 10 H 1.48502 * 109.47330 * 210.00329 * 8 6 4 11 11 H 1.48503 * 109.46947 * 330.00298 * 8 6 4 12 12 C 1.50702 * 109.47082 * 119.99993 * 2 1 3 13 13 O 1.21276 * 119.99853 * 101.50098 * 12 2 1 14 14 N 1.34782 * 119.99598 * 281.50083 * 12 2 1 15 15 C 1.46921 * 120.63506 * 5.90263 * 14 12 2 16 16 C 1.53188 * 108.77527 * 126.39025 * 15 14 12 17 17 C 1.53041 * 109.31439 * 54.63726 * 16 15 14 18 18 C 1.53040 * 109.53612 * 298.63828 * 17 16 15 19 19 C 1.46924 * 120.62721 * 185.90643 * 14 12 2 20 20 H 1.08996 * 109.70465 * 113.74736 * 19 14 12 21 21 C 1.53007 * 109.58801 * 353.39177 * 19 14 12 22 22 N 1.46500 * 109.46709 * 68.64613 * 21 19 14 23 23 C 1.34781 * 119.99721 * 174.97842 * 22 21 19 24 24 O 1.21281 * 119.99946 * 0.02562 * 23 22 21 25 25 C 1.50699 * 120.00037 * 180.02562 * 23 22 21 26 26 H 1.09004 * 109.47291 * 60.00100 * 25 23 22 27 27 C 1.53004 * 109.47171 * 300.00912 * 25 23 22 28 28 C 1.52997 * 109.47140 * 180.02562 * 25 23 22 29 29 C 1.47208 * 109.46929 * 185.00101 * 28 25 23 30 30 N 8.42537 * 146.06831 * 189.50559 * 2 1 3 31 31 H 1.09006 * 109.47114 * 304.37519 * 1 2 3 32 32 H 1.08998 * 109.47210 * 64.38346 * 1 2 3 33 33 H 1.09003 * 109.47106 * 184.38317 * 1 2 3 34 34 H 0.96993 * 120.00599 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.58232 * 6.60787 * 15 14 12 36 36 H 1.08998 * 109.58879 * 246.18094 * 15 14 12 37 37 H 1.08998 * 109.50081 * 294.68735 * 16 15 14 38 38 H 1.09000 * 109.52632 * 174.60553 * 16 15 14 39 39 H 1.08995 * 109.46385 * 178.61119 * 17 16 15 40 40 H 1.09003 * 109.45481 * 58.65077 * 17 16 15 41 41 H 1.09002 * 109.49335 * 301.40798 * 18 17 16 42 42 H 1.09007 * 109.52283 * 181.32972 * 18 17 16 43 43 H 1.08995 * 109.46845 * 308.65063 * 21 19 14 44 44 H 1.08995 * 109.47333 * 188.64797 * 21 19 14 45 45 H 0.97001 * 120.00327 * 354.98884 * 22 21 19 46 46 H 1.09005 * 109.47108 * 180.02562 * 27 25 23 47 47 H 1.09002 * 109.46917 * 299.99266 * 27 25 23 48 48 H 1.08995 * 109.47591 * 59.99861 * 27 25 23 49 49 H 1.08994 * 109.47350 * 65.00497 * 28 25 23 50 50 H 1.08995 * 109.47192 * 304.99790 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3225 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 6 2.0324 -0.7104 1.2305 13 8 2.4319 -1.8527 1.1505 14 7 2.0375 -0.0762 2.4198 15 6 1.4391 1.2583 2.5592 16 6 0.4227 1.2257 3.7048 17 6 1.1055 0.7075 4.9727 18 6 1.6120 -0.7171 4.7355 19 6 2.6418 -0.7064 3.6015 20 1 3.5204 -0.1404 3.9110 21 6 3.0492 -2.1424 3.2651 22 7 4.1667 -2.1238 2.3180 23 6 4.7616 -3.2774 1.9549 24 8 4.3714 -4.3309 2.4119 25 6 5.9114 -3.2583 0.9810 26 1 6.7252 -2.6602 1.3913 27 6 5.4480 -2.6484 -0.3435 28 6 6.3999 -4.6881 0.7405 29 6 7.5972 -4.6601 -0.1155 30 7 8.5206 -4.6385 -0.7767 31 1 -0.3634 0.5803 0.8482 32 1 -0.3633 0.4443 -0.9266 33 1 -0.3633 -1.0247 0.0785 34 1 0.7089 1.1613 -3.4844 35 1 0.9357 1.5317 1.6318 36 1 2.2185 1.9867 2.7828 37 1 -0.4027 0.5648 3.4402 38 1 0.0412 2.2312 3.8822 39 1 0.3908 0.7065 5.7956 40 1 1.9461 1.3548 5.2228 41 1 0.7753 -1.3596 4.4611 42 1 2.0773 -1.0946 5.6460 43 1 2.2032 -2.6649 2.8187 44 1 3.3539 -2.6566 4.1766 45 1 4.4785 -1.2812 1.9522 46 1 6.2796 -2.6350 -1.0480 47 1 4.6343 -3.2465 -0.7538 48 1 5.0998 -1.6299 -0.1724 49 1 5.6149 -5.2623 0.2484 50 1 6.6464 -5.1533 1.6949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871469177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:08 Heat of formation + Delta-G solvation = -48.277568 kcal Electronic energy + Delta-G solvation = -31236.851558 eV Core-core repulsion = 27264.137446 eV Total energy + Delta-G solvation = -3972.714112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71809 -40.43268 -38.15098 -37.94465 -36.32723 -35.23799 -35.12190 -33.71299 -32.60779 -31.71360 -29.14636 -27.75837 -27.18256 -25.73908 -24.39180 -24.33082 -22.69172 -21.58167 -20.93531 -19.57418 -18.81306 -18.23517 -17.81608 -17.24214 -16.89223 -16.75372 -16.58681 -16.29542 -15.74501 -15.42836 -15.27652 -15.14960 -14.86441 -14.72595 -14.57976 -14.19508 -14.07100 -13.88609 -13.69597 -13.55448 -13.38801 -13.18907 -13.11401 -12.99441 -12.94769 -12.80627 -12.59492 -12.45882 -12.19728 -12.05950 -12.04260 -12.00091 -11.91646 -11.74271 -11.49947 -11.35066 -10.95110 -10.63036 -10.47241 -9.76702 -9.59164 -9.11629 -8.09418 -6.16520 1.38956 1.42973 1.50538 1.65180 1.77383 1.83181 2.14014 2.25049 2.46308 2.50762 3.09671 3.22047 3.68304 3.71234 3.97233 3.97464 3.99941 4.08634 4.23430 4.32281 4.35079 4.36469 4.45102 4.60375 4.69648 4.75773 4.76523 4.79873 4.83292 4.86727 4.94738 5.03704 5.05353 5.06402 5.13317 5.15156 5.18199 5.28927 5.32324 5.33674 5.53828 5.56060 5.73057 5.79408 5.89955 6.05280 6.30221 6.53761 6.72674 6.75089 6.93455 7.47199 7.49247 7.71008 8.96100 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007622 B = 0.005809 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.924485 B = 4819.284721 C = 8041.177955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.031 3.969 3 H 0.035 0.965 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.937 3.063 9 H -0.285 1.285 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.512 3.488 13 O -0.539 6.539 14 N -0.617 5.617 15 C 0.102 3.898 16 C -0.131 4.131 17 C -0.110 4.110 18 C -0.123 4.123 19 C 0.136 3.864 20 H 0.094 0.906 21 C 0.140 3.860 22 N -0.680 5.680 23 C 0.524 3.476 24 O -0.588 6.588 25 C -0.094 4.094 26 H 0.128 0.872 27 C -0.136 4.136 28 C -0.002 4.002 29 C 0.241 3.759 30 N -0.489 5.489 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.399 0.601 46 H 0.062 0.938 47 H 0.045 0.955 48 H 0.061 0.939 49 H 0.115 0.885 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 2.221 17.271 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 H 0.052 0.948 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.177 4.177 7 N -0.553 5.553 8 Si 0.764 3.236 9 H -0.211 1.211 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.303 3.697 13 O -0.416 6.416 14 N -0.353 5.353 15 C -0.020 4.020 16 C -0.170 4.170 17 C -0.147 4.147 18 C -0.161 4.161 19 C 0.033 3.967 20 H 0.111 0.889 21 C 0.016 3.984 22 N -0.328 5.328 23 C 0.311 3.689 24 O -0.470 6.470 25 C -0.116 4.116 26 H 0.145 0.855 27 C -0.193 4.193 28 C -0.043 4.043 29 C -0.076 4.076 30 N -0.166 5.166 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.233 0.767 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.133 0.867 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.453 1.029 16.424 17.048 hybrid contribution -0.450 0.008 -1.540 1.604 sum 4.003 1.036 14.885 15.448 Atomic orbital electron populations 1.21603 0.96484 0.98261 1.01573 1.18722 0.94123 0.95869 0.90273 0.94760 1.21287 1.30557 1.12003 0.90444 0.92392 1.25440 0.95599 0.95644 1.00977 1.69932 1.37819 1.23811 1.23758 0.85871 0.78914 0.78467 0.80304 1.21140 1.20912 1.19565 1.21338 0.76934 0.86819 0.84657 1.90689 1.46930 1.18332 1.85666 1.48259 1.59738 1.19179 1.08134 1.21918 0.96775 0.83082 1.00275 1.21910 0.97561 1.02579 0.94915 1.21466 1.01011 0.95093 0.97129 1.21876 0.98108 0.98605 0.97549 1.21571 0.96737 0.92376 0.86020 0.88853 1.21320 0.90035 0.96205 0.90811 1.45706 1.32890 1.08866 1.45329 1.20342 0.83801 0.83524 0.81243 1.90629 1.67037 1.31493 1.57844 1.21145 0.97375 0.97410 0.95685 0.85456 1.21699 1.00896 1.01451 0.95302 1.19167 0.88677 0.97568 0.98844 1.29362 0.93823 0.91709 0.92701 1.81234 1.13689 1.09974 1.11750 0.93532 0.91463 0.96870 0.93078 0.90470 0.90145 0.93145 0.88952 0.90214 0.90263 0.93006 0.88648 0.93027 0.91371 0.76678 0.91947 0.93587 0.92037 0.86656 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.71 71.98 0.63 -4.72 16 2 C 0.03 1.41 1.77 -12.29 -0.02 1.39 16 3 H 0.03 1.61 7.20 -2.39 -0.02 1.59 16 4 C -0.50 -26.31 8.35 25.60 0.21 -26.10 16 5 H 0.06 3.16 6.91 -2.91 -0.02 3.14 16 6 C 0.02 1.16 5.29 84.65 0.45 1.61 16 7 N -0.91 -49.38 11.30 21.45 0.24 -49.14 16 8 Si 0.94 43.43 29.54 68.60 2.03 45.46 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.51 19.57 6.23 87.66 0.55 20.11 16 13 O -0.54 -22.63 9.39 -3.02 -0.03 -22.66 16 14 N -0.62 -17.25 2.97 -795.04 -2.36 -19.62 16 15 C 0.10 2.38 5.81 86.36 0.50 2.88 16 16 C -0.13 -2.35 6.08 30.67 0.19 -2.17 16 17 C -0.11 -1.52 5.88 30.62 0.18 -1.34 16 18 C -0.12 -2.11 5.36 30.67 0.16 -1.95 16 19 C 0.14 2.99 2.93 44.98 0.13 3.12 16 20 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 21 C 0.14 3.89 4.28 86.38 0.37 4.26 16 22 N -0.68 -19.36 3.07 -463.06 -1.42 -20.78 16 23 C 0.52 15.56 6.83 87.66 0.60 16.16 16 24 O -0.59 -20.86 15.91 -3.03 -0.05 -20.91 16 25 C -0.09 -2.20 2.70 -11.54 -0.03 -2.23 16 26 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 27 C -0.14 -3.98 8.90 71.98 0.64 -3.34 16 28 C 0.00 -0.05 4.53 28.79 0.13 0.08 16 29 C 0.24 5.86 14.40 89.44 1.29 7.15 16 30 N -0.49 -14.65 18.54 20.01 0.37 -14.27 16 31 H 0.05 1.71 6.25 -2.38 -0.01 1.69 16 32 H 0.07 3.34 5.97 -2.39 -0.01 3.33 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 35 H 0.08 2.20 4.36 -2.38 -0.01 2.19 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.05 1.89 6.37 -2.39 -0.02 1.88 16 44 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 45 H 0.40 10.81 7.22 -92.71 -0.67 10.14 16 46 H 0.06 1.73 7.38 -2.38 -0.02 1.71 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 1.95 7.56 -2.39 -0.02 1.94 16 49 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 50 H 0.14 2.33 7.95 -2.39 -0.02 2.31 16 Total: -1.00 -67.64 391.42 5.03 -62.60 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.28 Total: 24.40 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.97 Total: 14.92 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.17 Total: -103.81 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -0.08 Total: -43.57 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.64 5.03 -62.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871469177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.325 kcal (2) G-P(sol) polarization free energy of solvation -67.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds