Wall clock time and date at job start Tue Mar 31 2020 19:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.53001 * 109.47635 * 239.99569 * 2 1 3 5 5 C 1.47197 * 109.46709 * 65.00083 * 4 2 1 6 6 N 3.43545 * 87.00057 * 280.50579 * 2 1 3 7 7 C 1.50707 * 109.47317 * 119.99693 * 2 1 3 8 8 O 1.21273 * 120.00148 * 101.87405 * 7 2 1 9 9 N 1.34781 * 119.99932 * 281.88229 * 7 2 1 10 10 C 1.46997 * 120.61084 * 6.15421 * 9 7 2 11 11 C 1.53186 * 108.73777 * 126.38993 * 10 9 7 12 12 C 1.53041 * 109.34216 * 54.61814 * 11 10 9 13 13 C 1.53039 * 109.53786 * 298.61795 * 12 11 10 14 14 C 1.46921 * 120.62936 * 186.12746 * 9 7 2 15 15 H 1.09005 * 109.58351 * 113.84421 * 14 9 7 16 16 C 1.52996 * 109.70602 * 353.49202 * 14 9 7 17 17 N 1.46499 * 109.47664 * 67.52175 * 16 14 9 18 18 C 1.34775 * 120.00204 * 174.52707 * 17 16 14 19 19 O 1.21279 * 120.00129 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99618 * 180.02562 * 18 17 16 21 21 H 1.08996 * 109.46779 * 299.99624 * 20 18 17 22 22 C 1.52993 * 109.47514 * 60.00255 * 20 18 17 23 23 C 1.50709 * 109.46572 * 180.02562 * 20 18 17 24 24 H 1.07996 * 119.99803 * 359.97438 * 23 20 18 25 25 C 1.37883 * 119.99702 * 179.97438 * 23 20 18 26 26 N 1.31510 * 120.00001 * 179.97438 * 25 23 20 27 27 Si 1.86807 * 119.99827 * 359.97438 * 25 23 20 28 28 H 1.48498 * 109.47161 * 90.00339 * 27 25 23 29 29 H 1.48502 * 109.46562 * 210.00122 * 27 25 23 30 30 H 1.48495 * 109.47104 * 329.99949 * 27 25 23 31 31 H 1.09004 * 109.47089 * 53.53435 * 1 2 3 32 32 H 1.09009 * 109.46875 * 173.52978 * 1 2 3 33 33 H 1.08995 * 109.47618 * 293.52909 * 1 2 3 34 34 H 1.08997 * 109.47282 * 184.99888 * 4 2 1 35 35 H 1.08995 * 109.47045 * 305.00270 * 4 2 1 36 36 H 1.08994 * 109.63552 * 6.59547 * 10 9 7 37 37 H 1.09009 * 109.57801 * 246.14782 * 10 9 7 38 38 H 1.08995 * 109.50088 * 294.64881 * 11 10 9 39 39 H 1.09002 * 109.49865 * 174.58382 * 11 10 9 40 40 H 1.09000 * 109.46227 * 58.63453 * 12 11 10 41 41 H 1.08997 * 109.46630 * 178.61080 * 12 11 10 42 42 H 1.09001 * 109.49921 * 181.30818 * 13 12 11 43 43 H 1.09000 * 109.49873 * 301.38149 * 13 12 11 44 44 H 1.08999 * 109.47143 * 187.52541 * 16 14 9 45 45 H 1.09001 * 109.47096 * 307.52209 * 16 14 9 46 46 H 0.97004 * 119.99641 * 354.52868 * 17 16 14 47 47 H 1.08991 * 109.47585 * 59.99396 * 22 20 18 48 48 H 1.09001 * 109.47384 * 179.97438 * 22 20 18 49 49 H 1.09008 * 109.46697 * 299.99581 * 22 20 18 50 50 H 0.96994 * 120.00119 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6507 0.0389 -2.4480 6 7 1.3502 0.6255 -3.3732 7 6 2.0324 -0.7104 1.2305 8 8 2.4383 -1.8503 1.1494 9 7 2.0304 -0.0788 2.4212 10 6 1.4190 1.2505 2.5625 11 6 0.4018 1.2051 3.7070 12 6 1.0876 0.6904 4.9746 13 6 1.6074 -0.7289 4.7348 14 6 2.6388 -0.7062 3.6023 15 1 3.5106 -0.1306 3.9135 16 6 3.0626 -2.1372 3.2656 17 7 4.1647 -2.1061 2.3009 18 6 4.7772 -3.2512 1.9403 19 8 4.4163 -4.3074 2.4148 20 6 5.9113 -3.2189 0.9484 21 1 5.5577 -2.8013 0.0058 22 6 7.0448 -2.3506 1.4977 23 6 6.4172 -4.6198 0.7183 24 1 5.9632 -5.4501 1.2386 25 6 7.4597 -4.8412 -0.1566 26 7 7.9015 -6.0635 -0.3571 27 14 8.2444 -3.4049 -1.0570 28 1 9.3662 -2.8661 -0.2468 29 1 8.7599 -3.8666 -2.3710 30 1 7.2310 -2.3404 -1.2691 31 1 -0.3633 0.6108 -0.8265 32 1 -0.3633 -1.0212 -0.1158 33 1 -0.3634 0.4102 0.9422 34 1 3.1264 -0.7995 -1.2054 35 1 1.6055 -1.7198 -1.2950 36 1 0.9141 1.5218 1.6354 37 1 2.1914 1.9856 2.7890 38 1 -0.4171 0.5374 3.4397 39 1 0.0108 2.2067 3.8861 40 1 1.9219 1.3447 5.2274 41 1 0.3717 0.6806 5.7964 42 1 2.0752 -1.1037 5.6453 43 1 0.7771 -1.3787 4.4583 44 1 3.3893 -2.6427 4.1743 45 1 2.2177 -2.6745 2.8347 46 1 4.4536 -1.2613 1.9218 47 1 7.3984 -2.7682 2.4403 48 1 7.8653 -2.3277 0.7805 49 1 6.6786 -1.3375 1.6639 50 1 8.6346 -6.2194 -0.9728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871469178.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:02 Heat of formation + Delta-G solvation = -16.702964 kcal Electronic energy + Delta-G solvation = -30945.637016 eV Core-core repulsion = 26974.292082 eV Total energy + Delta-G solvation = -3971.344934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.17061 -38.51932 -37.97625 -36.97473 -35.19551 -33.74567 -33.60786 -33.00893 -31.66969 -30.81586 -28.43571 -27.04699 -25.02201 -25.00247 -24.14662 -22.72404 -21.75160 -21.02516 -19.42806 -18.82857 -18.05398 -16.75023 -16.60751 -16.41891 -15.89925 -15.53551 -15.42805 -15.14234 -14.80346 -14.77352 -14.38138 -14.23744 -13.99717 -13.69041 -13.45470 -13.32120 -12.95660 -12.93983 -12.77325 -12.56464 -12.44265 -12.36133 -12.30203 -12.21176 -11.99707 -11.52503 -11.44937 -11.41857 -11.32429 -11.28597 -11.04273 -10.91890 -10.83742 -10.46114 -10.18919 -9.54351 -9.19086 -8.97468 -8.94720 -8.49906 -8.37931 -7.92115 -5.94831 -3.93255 2.39595 2.49402 2.62426 2.77277 3.29264 3.36658 3.42448 3.71686 3.93620 3.99676 4.22152 4.30788 4.40479 4.46499 4.47827 4.56291 4.60168 4.76558 4.82770 4.90828 4.95761 5.10554 5.16469 5.28385 5.30745 5.35318 5.39135 5.42087 5.49926 5.51238 5.64824 5.66410 5.67500 5.77682 5.81557 5.93176 6.01406 6.19167 6.22572 6.44911 6.47908 6.59127 6.84982 7.17243 7.27879 7.30837 7.37160 7.69154 8.07048 8.38283 8.71465 9.26199 9.44037 9.66197 11.18572 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.004244 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.547489 B = 6596.209015 C = 8454.095841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.015 4.015 5 C 0.213 3.787 6 N -0.441 5.441 7 C 0.501 3.499 8 O -0.481 6.481 9 N -0.613 5.613 10 C 0.103 3.897 11 C -0.136 4.136 12 C -0.118 4.118 13 C -0.128 4.128 14 C 0.137 3.863 15 H 0.077 0.923 16 C 0.134 3.866 17 N -0.716 5.716 18 C 0.535 3.465 19 O -0.541 6.541 20 C -0.004 4.004 21 H 0.049 0.951 22 C -0.142 4.142 23 C -0.498 4.498 24 H 0.093 0.907 25 C 0.068 3.932 26 N -0.899 5.899 27 Si 0.884 3.116 28 H -0.280 1.280 29 H -0.297 1.297 30 H -0.268 1.268 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.385 0.615 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.029 0.971 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.571 21.221 8.912 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 H 0.116 0.884 4 C -0.055 4.055 5 C -0.105 4.105 6 N -0.118 5.118 7 C 0.287 3.713 8 O -0.353 6.353 9 N -0.349 5.349 10 C -0.020 4.020 11 C -0.174 4.174 12 C -0.156 4.156 13 C -0.167 4.167 14 C 0.034 3.966 15 H 0.095 0.905 16 C 0.010 3.990 17 N -0.369 5.369 18 C 0.323 3.677 19 O -0.416 6.416 20 C -0.026 4.026 21 H 0.066 0.934 22 C -0.200 4.200 23 C -0.536 4.536 24 H 0.110 0.890 25 C -0.133 4.133 26 N -0.538 5.538 27 Si 0.714 3.286 28 H -0.207 1.207 29 H -0.225 1.225 30 H -0.193 1.193 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.218 0.782 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.926 20.532 7.710 27.703 hybrid contribution 0.799 1.143 -0.349 1.437 sum -16.127 21.674 7.361 28.001 Atomic orbital electron populations 1.21922 0.92262 1.03738 1.02826 1.21249 0.98161 1.00871 0.92474 0.88355 1.19167 1.04354 0.98044 0.83957 1.29123 0.93073 0.93689 0.94567 1.81231 1.09483 1.09877 1.11180 1.20365 0.79546 0.87462 0.83948 1.91064 1.43021 1.16326 1.84852 1.48045 1.59190 1.18948 1.08764 1.21850 0.96131 0.84118 0.99862 1.21927 0.98308 1.01899 0.95288 1.21498 1.00385 0.96327 0.97391 1.21898 0.99163 0.97485 0.98166 1.21558 0.95224 0.94794 0.85022 0.90477 1.21291 0.92206 0.93299 0.92221 1.45998 1.35115 1.09662 1.46116 1.20914 0.82759 0.82416 0.81624 1.90549 1.65525 1.30525 1.55034 1.19258 0.90609 0.98955 0.93751 0.93356 1.22102 0.99455 0.96989 1.01451 1.20983 1.16388 0.91096 1.25135 0.88955 1.24986 0.96608 0.95339 0.96334 1.69886 1.27421 1.19768 1.36744 0.86926 0.79836 0.83147 0.78650 1.20715 1.22499 1.19332 0.91609 0.91082 0.91356 0.86314 0.85954 0.89274 0.91280 0.91324 0.90753 0.91669 0.91511 0.90336 0.91009 0.92381 0.90043 0.78206 0.92531 0.93576 0.95210 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.45 37.16 0.31 -0.58 16 2 C -0.10 -0.74 1.84 -91.77 -0.17 -0.91 16 3 H 0.10 0.52 7.23 -51.93 -0.38 0.15 16 4 C -0.01 -0.13 4.55 -29.52 -0.13 -0.26 16 5 C 0.21 2.22 14.52 -20.76 -0.30 1.92 16 6 N -0.44 -5.78 18.54 42.16 0.78 -5.00 16 7 C 0.50 4.83 6.18 -10.98 -0.07 4.76 16 8 O -0.48 -6.82 9.83 5.56 0.05 -6.76 16 9 N -0.61 -4.74 2.97 -165.17 -0.49 -5.24 16 10 C 0.10 0.49 5.66 -3.67 -0.02 0.47 16 11 C -0.14 -0.58 6.08 -26.61 -0.16 -0.74 16 12 C -0.12 -0.59 5.88 -26.69 -0.16 -0.75 16 13 C -0.13 -0.90 5.37 -26.61 -0.14 -1.04 16 14 C 0.14 1.23 2.94 -67.60 -0.20 1.03 16 15 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 16 C 0.13 1.87 4.29 -4.04 -0.02 1.85 16 17 N -0.72 -11.84 3.04 -60.30 -0.18 -12.03 16 18 C 0.53 12.08 6.83 -10.99 -0.08 12.00 16 19 O -0.54 -14.59 15.45 5.56 0.09 -14.50 16 20 C 0.00 -0.10 2.23 -92.92 -0.21 -0.30 16 21 H 0.05 1.14 7.20 -51.93 -0.37 0.76 16 22 C -0.14 -2.98 8.57 37.15 0.32 -2.67 16 23 C -0.50 -14.77 8.96 -34.43 -0.31 -15.08 16 24 H 0.09 3.14 7.00 -52.49 -0.37 2.77 16 25 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 26 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 27 Si 0.88 21.80 24.38 -169.99 -4.14 17.66 16 28 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 29 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 31 H 0.06 0.39 7.60 -51.93 -0.39 0.00 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.32 6.31 -51.93 -0.33 0.00 16 34 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.12 1.10 8.07 -51.93 -0.42 0.68 16 36 H 0.09 0.32 4.52 -51.93 -0.23 0.09 16 37 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 45 H 0.08 1.32 6.45 -51.93 -0.34 0.98 16 46 H 0.39 5.53 7.11 -40.82 -0.29 5.24 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.05 1.01 3.28 -51.93 -0.17 0.84 16 49 H 0.03 0.49 7.57 -51.92 -0.39 0.10 16 50 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -37.71 384.77 -6.68 -44.40 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.93 Total: 1.69 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.43 Total: 1.62 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.88 Total: -49.90 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.14 Total: -21.26 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.71 -6.68 -44.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871469178.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.693 kcal (2) G-P(sol) polarization free energy of solvation -37.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds