Wall clock time and date at job start Tue Mar 31 2020 19:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.53001 * 109.47635 * 239.99569 * 2 1 3 5 5 C 1.47197 * 109.46709 * 65.00083 * 4 2 1 6 6 N 3.43545 * 87.00057 * 280.50579 * 2 1 3 7 7 C 1.50707 * 109.47317 * 119.99693 * 2 1 3 8 8 O 1.21273 * 120.00148 * 101.87405 * 7 2 1 9 9 N 1.34781 * 119.99932 * 281.88229 * 7 2 1 10 10 C 1.46997 * 120.61084 * 6.15421 * 9 7 2 11 11 C 1.53186 * 108.73777 * 126.38993 * 10 9 7 12 12 C 1.53041 * 109.34216 * 54.61814 * 11 10 9 13 13 C 1.53039 * 109.53786 * 298.61795 * 12 11 10 14 14 C 1.46921 * 120.62936 * 186.12746 * 9 7 2 15 15 H 1.09005 * 109.58351 * 113.84421 * 14 9 7 16 16 C 1.52996 * 109.70602 * 353.49202 * 14 9 7 17 17 N 1.46499 * 109.47664 * 67.52175 * 16 14 9 18 18 C 1.34775 * 120.00204 * 174.52707 * 17 16 14 19 19 O 1.21279 * 120.00129 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99618 * 180.02562 * 18 17 16 21 21 H 1.08996 * 109.46779 * 299.99624 * 20 18 17 22 22 C 1.52993 * 109.47514 * 60.00255 * 20 18 17 23 23 C 1.50709 * 109.46572 * 180.02562 * 20 18 17 24 24 H 1.07996 * 119.99803 * 359.97438 * 23 20 18 25 25 C 1.37883 * 119.99702 * 179.97438 * 23 20 18 26 26 N 1.31510 * 120.00001 * 179.97438 * 25 23 20 27 27 Si 1.86807 * 119.99827 * 359.97438 * 25 23 20 28 28 H 1.48498 * 109.47161 * 90.00339 * 27 25 23 29 29 H 1.48502 * 109.46562 * 210.00122 * 27 25 23 30 30 H 1.48495 * 109.47104 * 329.99949 * 27 25 23 31 31 H 1.09004 * 109.47089 * 53.53435 * 1 2 3 32 32 H 1.09009 * 109.46875 * 173.52978 * 1 2 3 33 33 H 1.08995 * 109.47618 * 293.52909 * 1 2 3 34 34 H 1.08997 * 109.47282 * 184.99888 * 4 2 1 35 35 H 1.08995 * 109.47045 * 305.00270 * 4 2 1 36 36 H 1.08994 * 109.63552 * 6.59547 * 10 9 7 37 37 H 1.09009 * 109.57801 * 246.14782 * 10 9 7 38 38 H 1.08995 * 109.50088 * 294.64881 * 11 10 9 39 39 H 1.09002 * 109.49865 * 174.58382 * 11 10 9 40 40 H 1.09000 * 109.46227 * 58.63453 * 12 11 10 41 41 H 1.08997 * 109.46630 * 178.61080 * 12 11 10 42 42 H 1.09001 * 109.49921 * 181.30818 * 13 12 11 43 43 H 1.09000 * 109.49873 * 301.38149 * 13 12 11 44 44 H 1.08999 * 109.47143 * 187.52541 * 16 14 9 45 45 H 1.09001 * 109.47096 * 307.52209 * 16 14 9 46 46 H 0.97004 * 119.99641 * 354.52868 * 17 16 14 47 47 H 1.08991 * 109.47585 * 59.99396 * 22 20 18 48 48 H 1.09001 * 109.47384 * 179.97438 * 22 20 18 49 49 H 1.09008 * 109.46697 * 299.99581 * 22 20 18 50 50 H 0.96994 * 120.00119 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6507 0.0389 -2.4480 6 7 1.3502 0.6255 -3.3732 7 6 2.0324 -0.7104 1.2305 8 8 2.4383 -1.8503 1.1494 9 7 2.0304 -0.0788 2.4212 10 6 1.4190 1.2505 2.5625 11 6 0.4018 1.2051 3.7070 12 6 1.0876 0.6904 4.9746 13 6 1.6074 -0.7289 4.7348 14 6 2.6388 -0.7062 3.6023 15 1 3.5106 -0.1306 3.9135 16 6 3.0626 -2.1372 3.2656 17 7 4.1647 -2.1061 2.3009 18 6 4.7772 -3.2512 1.9403 19 8 4.4163 -4.3074 2.4148 20 6 5.9113 -3.2189 0.9484 21 1 5.5577 -2.8013 0.0058 22 6 7.0448 -2.3506 1.4977 23 6 6.4172 -4.6198 0.7183 24 1 5.9632 -5.4501 1.2386 25 6 7.4597 -4.8412 -0.1566 26 7 7.9015 -6.0635 -0.3571 27 14 8.2444 -3.4049 -1.0570 28 1 9.3662 -2.8661 -0.2468 29 1 8.7599 -3.8666 -2.3710 30 1 7.2310 -2.3404 -1.2691 31 1 -0.3633 0.6108 -0.8265 32 1 -0.3633 -1.0212 -0.1158 33 1 -0.3634 0.4102 0.9422 34 1 3.1264 -0.7995 -1.2054 35 1 1.6055 -1.7198 -1.2950 36 1 0.9141 1.5218 1.6354 37 1 2.1914 1.9856 2.7890 38 1 -0.4171 0.5374 3.4397 39 1 0.0108 2.2067 3.8861 40 1 1.9219 1.3447 5.2274 41 1 0.3717 0.6806 5.7964 42 1 2.0752 -1.1037 5.6453 43 1 0.7771 -1.3787 4.4583 44 1 3.3893 -2.6427 4.1743 45 1 2.2177 -2.6745 2.8347 46 1 4.4536 -1.2613 1.9218 47 1 7.3984 -2.7682 2.4403 48 1 7.8653 -2.3277 0.7805 49 1 6.6786 -1.3375 1.6639 50 1 8.6346 -6.2194 -0.9728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871469178.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:02 Heat of formation + Delta-G solvation = -43.899140 kcal Electronic energy + Delta-G solvation = -30946.816331 eV Core-core repulsion = 26974.292082 eV Total energy + Delta-G solvation = -3972.524249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97081 -40.16457 -38.66801 -37.82450 -36.19947 -35.67684 -34.78831 -33.61717 -33.34583 -32.09395 -29.06786 -27.93662 -27.04999 -25.89120 -24.69711 -24.16775 -22.75512 -21.61076 -20.93568 -19.62513 -18.83381 -18.73131 -17.73587 -17.37276 -17.04025 -16.85884 -16.38611 -16.12016 -16.00004 -15.75942 -15.38895 -15.18246 -14.89810 -14.80589 -14.59998 -14.32613 -14.14187 -14.02614 -13.88651 -13.62767 -13.57065 -13.42727 -13.23367 -13.10630 -12.99812 -12.85868 -12.68640 -12.46755 -12.08545 -12.07833 -12.04988 -11.98447 -11.78310 -11.52433 -11.43403 -11.38986 -11.15249 -10.72870 -10.32977 -9.98521 -9.80130 -9.19896 -8.22458 -6.28929 1.34030 1.41514 1.52787 1.62084 1.74462 1.78988 2.04880 2.18781 2.37861 2.63655 2.97279 3.11586 3.53993 3.69251 3.93397 3.96213 3.97975 4.06401 4.18671 4.28099 4.29388 4.32782 4.38583 4.50068 4.58441 4.66531 4.70370 4.74771 4.75388 4.79317 4.84947 4.86390 4.93580 4.98977 5.05451 5.06622 5.15841 5.16012 5.27424 5.28806 5.34824 5.52587 5.55989 5.59735 5.69087 5.86691 6.34608 6.51568 6.55518 6.78691 7.02543 7.32665 7.34474 7.77620 8.95832 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.004244 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.547489 B = 6596.209015 C = 8454.095841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.128 0.872 4 C -0.013 4.013 5 C 0.241 3.759 6 N -0.486 5.486 7 C 0.502 3.498 8 O -0.537 6.537 9 N -0.607 5.607 10 C 0.098 3.902 11 C -0.134 4.134 12 C -0.114 4.114 13 C -0.126 4.126 14 C 0.147 3.853 15 H 0.096 0.904 16 C 0.136 3.864 17 N -0.683 5.683 18 C 0.531 3.469 19 O -0.602 6.602 20 C -0.006 4.006 21 H 0.063 0.937 22 C -0.136 4.136 23 C -0.515 4.515 24 H 0.024 0.976 25 C 0.003 3.997 26 N -0.957 5.957 27 Si 0.961 3.039 28 H -0.260 1.260 29 H -0.302 1.302 30 H -0.230 1.230 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.401 0.599 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.083 0.917 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 26.909 9.273 33.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.146 0.854 4 C -0.054 4.054 5 C -0.076 4.076 6 N -0.164 5.164 7 C 0.289 3.711 8 O -0.413 6.413 9 N -0.341 5.341 10 C -0.023 4.023 11 C -0.172 4.172 12 C -0.152 4.152 13 C -0.164 4.164 14 C 0.043 3.957 15 H 0.114 0.886 16 C 0.012 3.988 17 N -0.334 5.334 18 C 0.319 3.681 19 O -0.482 6.482 20 C -0.028 4.028 21 H 0.080 0.920 22 C -0.193 4.193 23 C -0.553 4.553 24 H 0.043 0.957 25 C -0.192 4.192 26 N -0.597 5.597 27 Si 0.786 3.214 28 H -0.185 1.185 29 H -0.230 1.230 30 H -0.153 1.153 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.237 0.763 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.102 0.898 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.343 26.340 8.112 32.564 hybrid contribution 0.781 -0.730 -0.356 1.127 sum -16.563 25.610 7.756 31.469 Atomic orbital electron populations 1.21906 0.91322 1.03188 1.03968 1.21218 0.98746 1.01606 0.90120 0.85394 1.19227 1.04400 0.97680 0.84058 1.29270 0.91687 0.92558 0.94064 1.81265 1.11090 1.11556 1.12494 1.20791 0.78505 0.86750 0.85016 1.91064 1.46004 1.18640 1.85613 1.48143 1.58416 1.19945 1.07641 1.22164 0.96831 0.82321 1.01006 1.21933 0.97805 1.02943 0.94499 1.21488 1.00953 0.94548 0.98167 1.21881 0.98114 0.99176 0.97277 1.21435 0.96636 0.91525 0.86067 0.88599 1.21322 0.90268 0.96840 0.90330 1.45631 1.34282 1.08377 1.45155 1.20754 0.82875 0.83104 0.81400 1.90529 1.67310 1.33035 1.57362 1.19191 0.92365 0.96139 0.95077 0.91978 1.21983 0.97847 0.98997 1.00481 1.21130 1.16653 0.92628 1.24924 0.95737 1.26056 0.96986 0.99017 0.97161 1.70092 1.28453 1.23129 1.38045 0.85693 0.79802 0.79405 0.76537 1.18542 1.22979 1.15265 0.91155 0.92461 0.89597 0.86186 0.86703 0.87652 0.89292 0.92125 0.88509 0.90542 0.90842 0.90223 0.92419 0.93896 0.92595 0.76337 0.93683 0.93812 0.89831 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.45 71.98 0.61 -0.74 16 2 C -0.09 -1.05 1.84 -11.54 -0.02 -1.07 16 3 H 0.13 0.73 7.23 -2.39 -0.02 0.71 16 4 C -0.01 -0.20 4.55 28.79 0.13 -0.07 16 5 C 0.24 4.59 14.52 89.44 1.30 5.88 16 6 N -0.49 -12.07 18.54 20.01 0.37 -11.70 16 7 C 0.50 8.52 6.18 87.66 0.54 9.06 16 8 O -0.54 -14.96 9.83 -3.01 -0.03 -14.99 16 9 N -0.61 -7.36 2.97 -794.85 -2.36 -9.72 16 10 C 0.10 0.44 5.66 86.35 0.49 0.93 16 11 C -0.13 -0.54 6.08 30.67 0.19 -0.35 16 12 C -0.11 -0.70 5.88 30.62 0.18 -0.52 16 13 C -0.13 -1.50 5.37 30.67 0.16 -1.34 16 14 C 0.15 2.27 2.94 44.97 0.13 2.40 16 15 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 16 C 0.14 3.79 4.29 86.38 0.37 4.16 16 17 N -0.68 -22.05 3.04 -463.07 -1.41 -23.46 16 18 C 0.53 24.57 6.83 87.66 0.60 25.17 16 19 O -0.60 -34.74 15.45 -3.02 -0.05 -34.79 16 20 C -0.01 -0.29 2.23 -12.28 -0.03 -0.32 16 21 H 0.06 2.80 7.20 -2.39 -0.02 2.78 16 22 C -0.14 -5.29 8.57 71.98 0.62 -4.68 16 23 C -0.51 -32.08 8.96 25.60 0.23 -31.85 16 24 H 0.02 1.81 7.00 -2.91 -0.02 1.79 16 25 C 0.00 0.21 5.45 84.66 0.46 0.67 16 26 N -0.96 -63.28 13.96 21.45 0.30 -62.98 16 27 Si 0.96 44.30 24.38 68.60 1.67 45.97 16 28 H -0.26 -11.12 6.87 99.48 0.68 -10.44 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 30 H -0.23 -9.11 6.53 99.48 0.65 -8.46 16 31 H 0.07 0.63 7.60 -2.39 -0.02 0.61 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.09 0.50 6.31 -2.39 -0.02 0.48 16 34 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 36 H 0.11 0.18 4.52 -2.39 -0.01 0.16 16 37 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 38 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.04 1.33 8.13 -2.39 -0.02 1.31 16 45 H 0.06 1.90 6.45 -2.39 -0.02 1.88 16 46 H 0.40 10.31 7.11 -92.71 -0.66 9.65 16 47 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.04 1.73 3.28 -2.39 -0.01 1.73 16 49 H 0.08 2.35 7.57 -2.38 -0.02 2.33 16 50 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -91.75 384.77 4.67 -87.08 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.22 Total: 17.26 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.96 Total: 7.34 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -3.10 Total: -107.86 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.08 Total: -49.79 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.97 kcal Total: -91.75 4.67 -87.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871469178.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.183 kcal (2) G-P(sol) polarization free energy of solvation -91.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds