Wall clock time and date at job start Tue Mar 31 2020 19:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47707 * 2 1 4 4 C 1.53007 * 109.47406 * 240.00102 * 2 1 3 5 5 C 1.47199 * 109.46770 * 65.00134 * 4 2 1 6 6 N 3.43549 * 87.00042 * 280.50918 * 2 1 3 7 7 C 1.50703 * 109.47351 * 120.00433 * 2 1 3 8 8 O 1.21276 * 120.00686 * 98.54234 * 7 2 1 9 9 N 1.34786 * 119.99781 * 278.54472 * 7 2 1 10 10 C 1.46925 * 120.62615 * 6.05669 * 9 7 2 11 11 C 1.53198 * 108.77445 * 233.62959 * 10 9 7 12 12 C 1.53040 * 109.31197 * 305.36942 * 11 10 9 13 13 C 1.53034 * 109.53744 * 61.36444 * 12 11 10 14 14 C 1.46917 * 120.63278 * 186.08302 * 9 7 2 15 15 H 1.08999 * 109.70291 * 246.23053 * 14 9 7 16 16 C 1.53007 * 109.58609 * 6.57826 * 14 9 7 17 17 N 1.46498 * 109.47132 * 287.03060 * 16 14 9 18 18 C 1.34780 * 119.99825 * 185.61199 * 17 16 14 19 19 O 1.21276 * 120.00184 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99992 * 179.97438 * 18 17 16 21 21 H 1.09004 * 109.46942 * 299.99647 * 20 18 17 22 22 C 1.53002 * 109.46780 * 59.99425 * 20 18 17 23 23 C 1.50696 * 109.46888 * 179.97438 * 20 18 17 24 24 H 1.07997 * 120.00430 * 359.97438 * 23 20 18 25 25 C 1.37885 * 119.99607 * 179.97438 * 23 20 18 26 26 N 1.31518 * 119.99750 * 0.02562 * 25 23 20 27 27 Si 1.86800 * 119.99828 * 179.97438 * 25 23 20 28 28 H 1.48497 * 109.47007 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.46569 * 120.00066 * 27 25 23 30 30 H 1.48499 * 109.47265 * 240.00119 * 27 25 23 31 31 H 1.08998 * 109.47227 * 184.17763 * 1 2 3 32 32 H 1.09004 * 109.47185 * 304.17905 * 1 2 3 33 33 H 1.09001 * 109.47302 * 64.17922 * 1 2 3 34 34 H 1.09000 * 109.47388 * 185.00140 * 4 2 1 35 35 H 1.09002 * 109.46595 * 305.00017 * 4 2 1 36 36 H 1.09004 * 109.58597 * 113.84844 * 10 9 7 37 37 H 1.08997 * 109.71134 * 353.48970 * 10 9 7 38 38 H 1.08999 * 109.49443 * 185.41379 * 11 10 9 39 39 H 1.08993 * 109.49654 * 65.32155 * 11 10 9 40 40 H 1.09000 * 109.45667 * 301.34212 * 12 11 10 41 41 H 1.08999 * 109.44819 * 181.37915 * 12 11 10 42 42 H 1.09007 * 109.49765 * 178.68306 * 13 12 11 43 43 H 1.09005 * 109.50044 * 58.58867 * 13 12 11 44 44 H 1.08997 * 109.46911 * 167.03079 * 16 14 9 45 45 H 1.09005 * 109.46810 * 47.02655 * 16 14 9 46 46 H 0.96998 * 120.00003 * 5.60858 * 17 16 14 47 47 H 1.09003 * 109.46510 * 180.02562 * 22 20 18 48 48 H 1.08994 * 109.47216 * 60.00506 * 22 20 18 49 49 H 1.08995 * 109.47587 * 299.99749 * 22 20 18 50 50 H 0.97003 * 119.99071 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6506 0.0391 -2.4481 6 7 1.3501 0.6258 -3.3732 7 6 2.0323 -0.7105 1.2304 8 8 2.3816 -1.8698 1.1612 9 7 2.0934 -0.0575 2.4079 10 6 1.5520 1.3021 2.5388 11 6 2.6419 2.2139 3.1113 12 6 3.1654 1.6170 4.4197 13 6 3.7802 0.2427 4.1454 14 6 2.7033 -0.6914 3.5847 15 1 1.9410 -0.8675 4.3436 16 6 3.3395 -2.0223 3.1785 17 7 2.2870 -3.0083 2.9213 18 6 2.6134 -4.2891 2.6575 19 8 3.7784 -4.6252 2.6326 20 6 1.5307 -5.3036 2.3935 21 1 0.8772 -5.3722 3.2632 22 6 0.7134 -4.8716 1.1743 23 6 2.1565 -6.6484 2.1275 24 1 3.2308 -6.7575 2.1472 25 6 1.3575 -7.7396 1.8590 26 7 0.0493 -7.6065 1.8345 27 14 2.1332 -9.4065 1.5285 28 1 3.6112 -9.2901 1.6134 29 1 1.6552 -10.3839 2.5392 30 1 1.7499 -9.8705 0.1710 31 1 -0.3633 -1.0249 0.0749 32 1 -0.3634 0.5773 0.8502 33 1 -0.3634 0.4476 -0.9251 34 1 3.1263 -0.7995 -1.2056 35 1 1.6053 -1.7198 -1.2952 36 1 0.6945 1.2907 3.2117 37 1 1.2438 1.6708 1.5605 38 1 2.2251 3.2025 3.3034 39 1 3.4601 2.2962 2.3960 40 1 2.3418 1.5120 5.1260 41 1 3.9237 2.2765 4.8416 42 1 4.1737 -0.1716 5.0737 43 1 4.5878 0.3436 3.4203 44 1 3.9822 -2.3784 3.9835 45 1 3.9330 -1.8805 2.2752 46 1 1.3552 -2.7394 2.9409 47 1 -0.0700 -5.6052 0.9836 48 1 1.3669 -4.8031 0.3046 49 1 0.2608 -3.8989 1.3663 50 1 -0.5127 -8.3742 1.6452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876308068.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:06 Heat of formation + Delta-G solvation = -28.134183 kcal Electronic energy + Delta-G solvation = -30873.551971 eV Core-core repulsion = 26901.711341 eV Total energy + Delta-G solvation = -3971.840629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04638 -38.34406 -37.91250 -36.93454 -35.07207 -33.67785 -33.47180 -32.94864 -31.49499 -30.08997 -28.38278 -26.82504 -25.03443 -24.84263 -24.13046 -22.54705 -21.58206 -20.84727 -19.35717 -18.80769 -17.99314 -16.71048 -16.33157 -16.11340 -15.82455 -15.61688 -15.14228 -14.95056 -14.77392 -14.64707 -14.25375 -14.07246 -13.88371 -13.60307 -13.49819 -13.09382 -12.91724 -12.72687 -12.67709 -12.44596 -12.42256 -12.28394 -12.15157 -11.81636 -11.52845 -11.39575 -11.31697 -11.27647 -11.17927 -10.99343 -10.90055 -10.85423 -10.53756 -10.50145 -10.04788 -9.81808 -9.23164 -8.79293 -8.75149 -8.37922 -8.09297 -7.79659 -5.90276 -3.91620 2.41763 2.60233 2.62705 2.81714 3.39832 3.46937 3.56283 3.74606 4.08011 4.17576 4.29446 4.36257 4.43197 4.52967 4.58652 4.64758 4.66571 4.83709 4.89210 4.96097 5.03508 5.16675 5.26766 5.38074 5.40560 5.43107 5.44502 5.44871 5.55243 5.56666 5.68021 5.70703 5.72917 5.89723 5.90880 5.97424 6.17925 6.49873 6.59578 6.83976 7.07087 7.16159 7.25168 7.37330 7.45305 7.68643 7.93259 8.15038 8.17405 8.37639 8.75019 9.18326 9.60583 9.74599 11.17359 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.003768 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.635350 B = 7428.629777 C = 9172.434207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.014 4.014 5 C 0.214 3.786 6 N -0.442 5.442 7 C 0.501 3.499 8 O -0.477 6.477 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.137 4.137 12 C -0.118 4.118 13 C -0.128 4.128 14 C 0.137 3.863 15 H 0.077 0.923 16 C 0.135 3.865 17 N -0.711 5.711 18 C 0.525 3.475 19 O -0.559 6.559 20 C 0.029 3.971 21 H 0.044 0.956 22 C -0.120 4.120 23 C -0.492 4.492 24 H 0.073 0.927 25 C 0.056 3.944 26 N -0.899 5.899 27 Si 0.896 3.104 28 H -0.272 1.272 29 H -0.286 1.286 30 H -0.286 1.286 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.388 0.612 47 H 0.085 0.915 48 H 0.030 0.970 49 H 0.008 0.992 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 24.287 3.499 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 H 0.114 0.886 4 C -0.054 4.054 5 C -0.104 4.104 6 N -0.119 5.119 7 C 0.287 3.713 8 O -0.349 6.349 9 N -0.349 5.349 10 C -0.018 4.018 11 C -0.175 4.175 12 C -0.156 4.156 13 C -0.167 4.167 14 C 0.034 3.966 15 H 0.095 0.905 16 C 0.010 3.990 17 N -0.363 5.363 18 C 0.315 3.685 19 O -0.437 6.437 20 C 0.008 3.992 21 H 0.062 0.938 22 C -0.178 4.178 23 C -0.531 4.531 24 H 0.091 0.909 25 C -0.144 4.144 26 N -0.539 5.539 27 Si 0.724 3.276 28 H -0.196 1.196 29 H -0.212 1.212 30 H -0.212 1.212 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.221 0.779 47 H 0.104 0.896 48 H 0.049 0.951 49 H 0.027 0.973 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.143 24.136 2.004 24.246 hybrid contribution -0.078 -0.733 0.199 0.763 sum 1.065 23.403 2.202 23.531 Atomic orbital electron populations 1.21878 0.92051 1.04079 1.02697 1.21248 0.98403 1.00553 0.92483 0.88608 1.19159 1.03834 0.98416 0.84028 1.29142 0.93078 0.93633 0.94545 1.81228 1.09369 1.09986 1.11308 1.20378 0.79630 0.87272 0.83986 1.91123 1.45083 1.14647 1.84037 1.48053 1.60536 1.16208 1.10063 1.21797 0.96142 0.81643 1.02171 1.21942 0.99035 0.98647 0.97891 1.21499 1.00688 0.96282 0.97143 1.21904 0.97937 0.95065 1.01775 1.21528 0.95205 0.92793 0.87047 0.90531 1.21215 0.91650 0.85772 1.00324 1.45971 1.08210 1.08715 1.73414 1.21617 0.91505 0.81904 0.73506 1.90491 1.21535 1.79967 1.51686 1.18813 0.91804 0.92293 0.96280 0.93812 1.21601 1.00693 0.97680 0.97841 1.21230 0.94232 0.91467 1.46141 0.90880 1.24945 0.94810 0.99005 0.95641 1.69901 1.03075 1.30183 1.50755 0.86458 0.79791 0.83800 0.77558 1.19610 1.21218 1.21187 0.90679 0.91565 0.91723 0.86787 0.85693 0.91206 0.89479 0.90812 0.91377 0.91655 0.91574 0.90355 0.91102 0.92476 0.90825 0.77872 0.89619 0.95053 0.97266 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.81 37.15 0.33 -0.75 16 2 C -0.10 -0.78 1.83 -91.77 -0.17 -0.95 16 3 H 0.10 0.54 6.76 -51.93 -0.35 0.19 16 4 C -0.01 -0.12 4.59 -29.52 -0.14 -0.26 16 5 C 0.21 2.19 14.33 -20.76 -0.30 1.90 16 6 N -0.44 -5.72 18.54 42.15 0.78 -4.94 16 7 C 0.50 5.14 6.45 -10.98 -0.07 5.07 16 8 O -0.48 -7.05 9.84 5.56 0.05 -7.00 16 9 N -0.61 -5.13 2.97 -165.22 -0.49 -5.62 16 10 C 0.11 0.56 5.68 -3.71 -0.02 0.54 16 11 C -0.14 -0.65 6.08 -26.61 -0.16 -0.81 16 12 C -0.12 -0.65 5.88 -26.69 -0.16 -0.80 16 13 C -0.13 -0.96 5.34 -26.62 -0.14 -1.10 16 14 C 0.14 1.33 2.91 -67.60 -0.20 1.13 16 15 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 16 C 0.13 1.97 4.32 -4.04 -0.02 1.96 16 17 N -0.71 -12.65 3.04 -60.29 -0.18 -12.84 16 18 C 0.53 12.46 6.87 -10.98 -0.08 12.38 16 19 O -0.56 -15.30 15.45 5.56 0.09 -15.21 16 20 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16 21 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.12 -2.85 8.87 37.16 0.33 -2.52 16 23 C -0.49 -14.45 8.37 -34.44 -0.29 -14.74 16 24 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 25 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 26 N -0.90 -25.88 11.32 55.43 0.63 -25.25 16 27 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 28 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.38 6.83 -51.93 -0.35 0.02 16 33 H 0.06 0.47 7.26 -51.93 -0.38 0.09 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.13 1.21 8.05 -51.93 -0.42 0.79 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.36 4.87 -51.93 -0.25 0.10 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 45 H 0.07 1.22 6.41 -51.93 -0.33 0.89 16 46 H 0.39 6.32 7.39 -40.82 -0.30 6.02 16 47 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 48 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.01 0.17 7.56 -51.93 -0.39 -0.22 16 50 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -35.65 392.35 -7.73 -43.37 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.08 Total: 1.11 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.41 Total: 3.05 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.73 Total: -48.65 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.14 Total: -22.21 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.65 -7.73 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876308068.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.240 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds