Wall clock time and date at job start Tue Mar 31 2020 19:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47707 * 2 1 4 4 C 1.53007 * 109.47406 * 240.00102 * 2 1 3 5 5 C 1.47199 * 109.46770 * 65.00134 * 4 2 1 6 6 N 3.43549 * 87.00042 * 280.50918 * 2 1 3 7 7 C 1.50703 * 109.47351 * 120.00433 * 2 1 3 8 8 O 1.21276 * 120.00686 * 98.54234 * 7 2 1 9 9 N 1.34786 * 119.99781 * 278.54472 * 7 2 1 10 10 C 1.46925 * 120.62615 * 6.05669 * 9 7 2 11 11 C 1.53198 * 108.77445 * 233.62959 * 10 9 7 12 12 C 1.53040 * 109.31197 * 305.36942 * 11 10 9 13 13 C 1.53034 * 109.53744 * 61.36444 * 12 11 10 14 14 C 1.46917 * 120.63278 * 186.08302 * 9 7 2 15 15 H 1.08999 * 109.70291 * 246.23053 * 14 9 7 16 16 C 1.53007 * 109.58609 * 6.57826 * 14 9 7 17 17 N 1.46498 * 109.47132 * 287.03060 * 16 14 9 18 18 C 1.34780 * 119.99825 * 185.61199 * 17 16 14 19 19 O 1.21276 * 120.00184 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99992 * 179.97438 * 18 17 16 21 21 H 1.09004 * 109.46942 * 299.99647 * 20 18 17 22 22 C 1.53002 * 109.46780 * 59.99425 * 20 18 17 23 23 C 1.50696 * 109.46888 * 179.97438 * 20 18 17 24 24 H 1.07997 * 120.00430 * 359.97438 * 23 20 18 25 25 C 1.37885 * 119.99607 * 179.97438 * 23 20 18 26 26 N 1.31518 * 119.99750 * 0.02562 * 25 23 20 27 27 Si 1.86800 * 119.99828 * 179.97438 * 25 23 20 28 28 H 1.48497 * 109.47007 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.46569 * 120.00066 * 27 25 23 30 30 H 1.48499 * 109.47265 * 240.00119 * 27 25 23 31 31 H 1.08998 * 109.47227 * 184.17763 * 1 2 3 32 32 H 1.09004 * 109.47185 * 304.17905 * 1 2 3 33 33 H 1.09001 * 109.47302 * 64.17922 * 1 2 3 34 34 H 1.09000 * 109.47388 * 185.00140 * 4 2 1 35 35 H 1.09002 * 109.46595 * 305.00017 * 4 2 1 36 36 H 1.09004 * 109.58597 * 113.84844 * 10 9 7 37 37 H 1.08997 * 109.71134 * 353.48970 * 10 9 7 38 38 H 1.08999 * 109.49443 * 185.41379 * 11 10 9 39 39 H 1.08993 * 109.49654 * 65.32155 * 11 10 9 40 40 H 1.09000 * 109.45667 * 301.34212 * 12 11 10 41 41 H 1.08999 * 109.44819 * 181.37915 * 12 11 10 42 42 H 1.09007 * 109.49765 * 178.68306 * 13 12 11 43 43 H 1.09005 * 109.50044 * 58.58867 * 13 12 11 44 44 H 1.08997 * 109.46911 * 167.03079 * 16 14 9 45 45 H 1.09005 * 109.46810 * 47.02655 * 16 14 9 46 46 H 0.96998 * 120.00003 * 5.60858 * 17 16 14 47 47 H 1.09003 * 109.46510 * 180.02562 * 22 20 18 48 48 H 1.08994 * 109.47216 * 60.00506 * 22 20 18 49 49 H 1.08995 * 109.47587 * 299.99749 * 22 20 18 50 50 H 0.97003 * 119.99071 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6506 0.0391 -2.4481 6 7 1.3501 0.6258 -3.3732 7 6 2.0323 -0.7105 1.2304 8 8 2.3816 -1.8698 1.1612 9 7 2.0934 -0.0575 2.4079 10 6 1.5520 1.3021 2.5388 11 6 2.6419 2.2139 3.1113 12 6 3.1654 1.6170 4.4197 13 6 3.7802 0.2427 4.1454 14 6 2.7033 -0.6914 3.5847 15 1 1.9410 -0.8675 4.3436 16 6 3.3395 -2.0223 3.1785 17 7 2.2870 -3.0083 2.9213 18 6 2.6134 -4.2891 2.6575 19 8 3.7784 -4.6252 2.6326 20 6 1.5307 -5.3036 2.3935 21 1 0.8772 -5.3722 3.2632 22 6 0.7134 -4.8716 1.1743 23 6 2.1565 -6.6484 2.1275 24 1 3.2308 -6.7575 2.1472 25 6 1.3575 -7.7396 1.8590 26 7 0.0493 -7.6065 1.8345 27 14 2.1332 -9.4065 1.5285 28 1 3.6112 -9.2901 1.6134 29 1 1.6552 -10.3839 2.5392 30 1 1.7499 -9.8705 0.1710 31 1 -0.3633 -1.0249 0.0749 32 1 -0.3634 0.5773 0.8502 33 1 -0.3634 0.4476 -0.9251 34 1 3.1263 -0.7995 -1.2056 35 1 1.6053 -1.7198 -1.2952 36 1 0.6945 1.2907 3.2117 37 1 1.2438 1.6708 1.5605 38 1 2.2251 3.2025 3.3034 39 1 3.4601 2.2962 2.3960 40 1 2.3418 1.5120 5.1260 41 1 3.9237 2.2765 4.8416 42 1 4.1737 -0.1716 5.0737 43 1 4.5878 0.3436 3.4203 44 1 3.9822 -2.3784 3.9835 45 1 3.9330 -1.8805 2.2752 46 1 1.3552 -2.7394 2.9409 47 1 -0.0700 -5.6052 0.9836 48 1 1.3669 -4.8031 0.3046 49 1 0.2608 -3.8989 1.3663 50 1 -0.5127 -8.3742 1.6452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876308068.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:05 Heat of formation + Delta-G solvation = -50.798078 kcal Electronic energy + Delta-G solvation = -30874.534751 eV Core-core repulsion = 26901.711341 eV Total energy + Delta-G solvation = -3972.823409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89465 -40.05695 -38.67257 -37.81101 -36.13527 -35.63926 -34.75392 -33.59674 -32.83020 -31.76650 -29.06552 -27.77946 -27.11045 -25.82404 -24.74762 -24.06443 -22.68670 -21.48564 -20.87270 -19.73205 -18.82136 -18.26592 -17.77669 -17.30691 -16.89531 -16.76670 -16.36800 -16.21378 -15.91690 -15.60052 -15.34483 -15.10392 -14.77617 -14.66892 -14.55259 -14.17870 -14.17293 -13.84237 -13.67688 -13.60418 -13.37818 -13.29735 -13.03074 -12.95934 -12.90423 -12.84203 -12.60632 -12.49111 -12.14949 -12.10352 -12.03261 -11.98146 -11.91188 -11.78349 -11.52025 -11.39275 -10.95330 -10.53387 -10.26538 -9.97243 -9.62303 -9.22084 -8.10112 -6.19302 1.40032 1.41444 1.55868 1.60759 1.77766 1.80415 2.06520 2.24893 2.44582 2.78034 2.97215 3.18861 3.55603 3.70655 3.92070 3.94211 4.01261 4.08784 4.20595 4.26876 4.33373 4.36232 4.52278 4.62980 4.71607 4.76217 4.78881 4.80038 4.84508 4.87526 4.93493 5.01517 5.05344 5.07374 5.12290 5.16136 5.16381 5.27114 5.30050 5.35447 5.55102 5.59885 5.70823 5.79652 5.93709 6.03202 6.31160 6.53481 6.54560 6.85713 7.05626 7.37917 7.46956 7.83237 8.95758 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.003768 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.635350 B = 7428.629777 C = 9172.434207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.125 0.875 4 C -0.011 4.011 5 C 0.241 3.759 6 N -0.486 5.486 7 C 0.502 3.498 8 O -0.532 6.532 9 N -0.606 5.606 10 C 0.100 3.900 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.124 4.124 14 C 0.146 3.854 15 H 0.087 0.913 16 C 0.137 3.863 17 N -0.682 5.682 18 C 0.524 3.476 19 O -0.605 6.605 20 C 0.025 3.975 21 H 0.031 0.969 22 C -0.098 4.098 23 C -0.523 4.523 24 H 0.044 0.956 25 C 0.018 3.982 26 N -0.912 5.912 27 Si 0.953 3.047 28 H -0.281 1.281 29 H -0.273 1.273 30 H -0.274 1.274 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.398 0.602 47 H 0.063 0.937 48 H 0.017 0.983 49 H 0.043 0.957 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 26.842 4.216 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.143 0.857 4 C -0.051 4.051 5 C -0.075 4.075 6 N -0.164 5.164 7 C 0.289 3.711 8 O -0.408 6.408 9 N -0.341 5.341 10 C -0.022 4.022 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.162 4.162 14 C 0.043 3.957 15 H 0.105 0.895 16 C 0.014 3.986 17 N -0.332 5.332 18 C 0.312 3.688 19 O -0.487 6.487 20 C 0.003 3.997 21 H 0.049 0.951 22 C -0.157 4.157 23 C -0.561 4.561 24 H 0.062 0.938 25 C -0.180 4.180 26 N -0.552 5.552 27 Si 0.779 3.221 28 H -0.206 1.206 29 H -0.198 1.198 30 H -0.200 1.200 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.233 0.767 47 H 0.082 0.918 48 H 0.036 0.964 49 H 0.062 0.938 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.121 26.784 2.747 26.925 hybrid contribution 0.220 -1.463 0.025 1.480 sum 0.341 25.321 2.771 25.474 Atomic orbital electron populations 1.21859 0.91386 1.03356 1.03735 1.21205 0.98708 1.01369 0.90315 0.85695 1.19192 1.04215 0.97710 0.83990 1.29258 0.91702 0.92534 0.94038 1.81259 1.10964 1.11582 1.12567 1.20795 0.78540 0.86743 0.84978 1.91104 1.47790 1.17082 1.84848 1.48138 1.59649 1.17355 1.08982 1.22109 0.96732 0.79579 1.03756 1.21939 0.98679 0.99385 0.97145 1.21492 1.01104 0.94715 0.97909 1.21877 0.96988 0.95978 1.01405 1.21393 0.96006 0.90689 0.87627 0.89530 1.21294 0.90899 0.87418 0.99035 1.45659 1.09548 1.07306 1.70698 1.21202 0.90137 0.83520 0.73892 1.90459 1.22863 1.81099 1.54321 1.18755 0.92341 0.92128 0.96437 0.95073 1.21330 0.99310 0.98682 0.96342 1.21328 0.93109 0.93908 1.47786 0.93785 1.25588 0.95367 1.01963 0.95106 1.69974 1.03670 1.31238 1.50291 0.85579 0.78332 0.80036 0.78143 1.20615 1.19841 1.19956 0.92502 0.89398 0.91604 0.86132 0.86866 0.89723 0.87704 0.88623 0.91811 0.90896 0.90645 0.90230 0.91909 0.93764 0.92629 0.76707 0.91819 0.96390 0.93829 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.81 71.98 0.63 -1.09 16 2 C -0.09 -1.19 1.83 -11.54 -0.02 -1.21 16 3 H 0.13 0.92 6.76 -2.39 -0.02 0.90 16 4 C -0.01 -0.17 4.59 28.79 0.13 -0.04 16 5 C 0.24 4.70 14.33 89.44 1.28 5.98 16 6 N -0.49 -12.21 18.54 20.01 0.37 -11.84 16 7 C 0.50 9.46 6.45 87.66 0.57 10.02 16 8 O -0.53 -15.66 9.84 -3.02 -0.03 -15.69 16 9 N -0.61 -8.59 2.97 -795.02 -2.36 -10.95 16 10 C 0.10 0.63 5.68 86.36 0.49 1.13 16 11 C -0.13 -0.69 6.08 30.67 0.19 -0.51 16 12 C -0.11 -0.85 5.88 30.62 0.18 -0.67 16 13 C -0.12 -1.60 5.34 30.67 0.16 -1.43 16 14 C 0.15 2.57 2.91 44.98 0.13 2.70 16 15 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 16 C 0.14 4.05 4.32 86.38 0.37 4.42 16 17 N -0.68 -24.55 3.04 -463.05 -1.41 -25.96 16 18 C 0.52 25.74 6.87 87.66 0.60 26.34 16 19 O -0.61 -34.77 15.45 -3.02 -0.05 -34.82 16 20 C 0.02 1.31 2.64 -12.29 -0.03 1.28 16 21 H 0.03 1.72 8.14 -2.38 -0.02 1.70 16 22 C -0.10 -4.76 8.87 71.98 0.64 -4.12 16 23 C -0.52 -31.84 8.37 25.60 0.21 -31.63 16 24 H 0.04 2.89 6.75 -2.91 -0.02 2.87 16 25 C 0.02 1.06 5.30 84.66 0.45 1.51 16 26 N -0.91 -52.82 11.32 21.45 0.24 -52.58 16 27 Si 0.95 46.60 29.54 68.60 2.03 48.63 16 28 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 30 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.66 6.83 -2.39 -0.02 0.64 16 33 H 0.06 0.80 7.26 -2.39 -0.02 0.78 16 34 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 2.20 8.05 -2.39 -0.02 2.18 16 36 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.10 0.34 4.87 -2.39 -0.01 0.33 16 38 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 45 H 0.06 1.89 6.41 -2.38 -0.02 1.88 16 46 H 0.40 12.71 7.39 -92.71 -0.69 12.02 16 47 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.04 1.74 7.56 -2.39 -0.02 1.72 16 50 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -81.02 392.35 5.04 -75.97 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.26 Total: 14.54 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.99 Total: 12.69 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.16 Total: -101.33 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.08 Total: -50.50 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -81.02 5.04 -75.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876308068.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.174 kcal (2) G-P(sol) polarization free energy of solvation -81.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds