Wall clock time and date at job start Tue Mar 31 2020 19:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.50700 * 109.47131 * 239.99636 * 2 1 3 5 5 H 1.07998 * 120.00363 * 245.33659 * 4 2 1 6 6 C 1.37882 * 119.99579 * 65.34373 * 4 2 1 7 7 N 1.31514 * 119.99658 * 196.74695 * 6 4 2 8 8 Si 1.86796 * 120.00392 * 16.47385 * 6 4 2 9 9 H 1.48502 * 109.46918 * 92.71720 * 8 6 4 10 10 H 1.48494 * 109.47473 * 212.71944 * 8 6 4 11 11 H 1.48506 * 109.46839 * 332.72213 * 8 6 4 12 12 C 1.50694 * 109.47177 * 120.00104 * 2 1 3 13 13 O 1.21277 * 120.00465 * 94.13375 * 12 2 1 14 14 N 1.34783 * 120.00111 * 274.13668 * 12 2 1 15 15 C 1.46930 * 120.62501 * 4.28836 * 14 12 2 16 16 C 1.52762 * 109.00710 * 233.58582 * 15 14 12 17 17 C 1.53039 * 109.38462 * 305.59329 * 16 15 14 18 18 C 1.53033 * 109.54046 * 61.23869 * 17 16 15 19 19 C 1.46921 * 120.63219 * 184.57525 * 14 12 2 20 20 H 1.09001 * 109.58751 * 246.15152 * 19 14 12 21 21 C 1.52998 * 109.58779 * 6.43454 * 19 14 12 22 22 N 1.46500 * 109.47108 * 287.91487 * 21 19 14 23 23 C 1.34780 * 119.99766 * 184.49614 * 22 21 19 24 24 O 1.21283 * 120.00077 * 359.97438 * 23 22 21 25 25 C 1.50695 * 119.99592 * 180.02562 * 23 22 21 26 26 H 1.09002 * 109.47843 * 59.99977 * 25 23 22 27 27 C 1.53001 * 109.47466 * 299.99881 * 25 23 22 28 28 C 1.53001 * 109.46936 * 180.02562 * 25 23 22 29 29 C 1.47201 * 109.46944 * 185.00028 * 28 25 23 30 30 N 8.51605 * 77.23782 * 168.93262 * 2 1 3 31 31 H 1.09004 * 109.47190 * 183.74448 * 1 2 3 32 32 H 1.09000 * 109.47734 * 303.74874 * 1 2 3 33 33 H 1.09002 * 109.47239 * 63.74880 * 1 2 3 34 34 H 0.97004 * 119.99888 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.58999 * 353.42183 * 15 14 12 36 36 H 1.09001 * 109.58443 * 113.84847 * 15 14 12 37 37 H 1.09002 * 109.56334 * 185.55875 * 16 15 14 38 38 H 1.08997 * 109.38643 * 65.52184 * 16 15 14 39 39 H 1.09007 * 109.45675 * 301.21898 * 17 16 15 40 40 H 1.09002 * 109.44860 * 181.25607 * 17 16 15 41 41 H 1.09003 * 109.50060 * 178.68473 * 18 17 16 42 42 H 1.09004 * 109.49499 * 58.58868 * 18 17 16 43 43 H 1.08999 * 109.46987 * 47.91666 * 21 19 14 44 44 H 1.08998 * 109.47187 * 167.91557 * 21 19 14 45 45 H 0.96994 * 119.99938 * 4.49857 * 22 21 19 46 46 H 1.09003 * 109.47080 * 300.00470 * 27 25 23 47 47 H 1.09002 * 109.47025 * 59.99581 * 27 25 23 48 48 H 1.08994 * 109.47748 * 180.02562 * 27 25 23 49 49 H 1.09001 * 109.46894 * 304.99588 * 28 25 23 50 50 H 1.08996 * 109.47242 * 65.00116 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5803 -1.6361 -1.1337 6 6 1.7924 -0.1787 -2.4797 7 7 1.9261 -0.9299 -3.5509 8 14 1.2701 1.6066 -2.6504 9 1 2.4707 2.4561 -2.8559 10 1 0.3593 1.7469 -3.8147 11 1 0.5652 2.0363 -1.4159 12 6 2.0323 -0.7104 1.2304 13 8 2.3058 -1.8908 1.1799 14 7 2.1776 -0.0339 2.3871 15 6 1.7625 1.3718 2.4892 16 6 2.9346 2.1999 3.0128 17 6 3.4371 1.5954 4.3259 18 6 3.9257 0.1666 4.0777 19 6 2.7597 -0.6863 3.5678 20 1 2.0028 -0.7738 4.3473 21 6 3.2669 -2.0786 3.1868 22 7 2.1257 -2.9696 2.9627 23 6 2.3316 -4.2761 2.7036 24 8 3.4616 -4.7140 2.6554 25 6 1.1578 -5.1924 2.4726 26 1 0.5856 -4.8407 1.6141 27 6 0.2633 -5.1983 3.7138 28 6 1.6637 -6.6109 2.2024 29 6 0.5265 -7.4802 1.8588 30 7 -0.3513 -8.1512 1.5944 31 1 -0.3634 -1.0255 0.0671 32 1 -0.3634 0.5709 0.8545 33 1 -0.3634 0.4545 -0.9217 34 1 1.7570 -0.5559 -4.4298 35 1 1.4683 1.7384 1.5058 36 1 0.9226 1.4556 3.1790 37 1 2.6085 3.2255 3.1858 38 1 3.7393 2.1931 2.2777 39 1 2.6251 1.5804 5.0529 40 1 4.2590 2.1984 4.7119 41 1 4.3051 -0.2551 5.0085 42 1 4.7210 0.1784 3.3323 43 1 3.8604 -2.0120 2.2750 44 1 3.8836 -2.4740 3.9938 45 1 1.2221 -2.6192 3.0009 46 1 0.8355 -5.5501 4.5723 47 1 -0.0970 -4.1879 3.9068 48 1 -0.5855 -5.8615 3.5470 49 1 2.3706 -6.5927 1.3729 50 1 2.1590 -6.9959 3.0937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876308071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:21 Heat of formation + Delta-G solvation = -25.986549 kcal Electronic energy + Delta-G solvation = -30895.341564 eV Core-core repulsion = 26923.594063 eV Total energy + Delta-G solvation = -3971.747501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54116 -39.30688 -37.06209 -36.85637 -34.99034 -34.17075 -33.52341 -32.58531 -31.56329 -30.83016 -28.25230 -26.75132 -25.23409 -24.73750 -23.47045 -23.18721 -21.47684 -20.49044 -19.77385 -18.40890 -17.75287 -17.07870 -16.43529 -16.09559 -15.78492 -15.58913 -15.43223 -14.81934 -14.69396 -14.45911 -14.21568 -14.03615 -13.61634 -13.56039 -13.39680 -13.08654 -12.83635 -12.70933 -12.63751 -12.45796 -12.39899 -12.29807 -12.10734 -12.03380 -11.89947 -11.44014 -11.22386 -11.15800 -11.07023 -11.03977 -10.98105 -10.72992 -10.70770 -10.53161 -10.38370 -9.73807 -9.44463 -9.29306 -8.67594 -8.45588 -8.22375 -8.02126 -6.13703 -4.08312 2.69450 2.80314 3.04245 3.19218 3.26403 3.31100 3.34083 3.45904 3.54152 4.10890 4.34590 4.60489 4.65911 4.74927 4.80779 4.85480 4.95847 5.06681 5.14674 5.15608 5.21483 5.33816 5.40592 5.50611 5.55726 5.58698 5.62699 5.70129 5.71626 5.77145 5.87112 5.92122 5.94867 5.97868 5.99760 6.01828 6.15617 6.23050 6.35558 6.38626 6.49176 6.75060 6.85084 6.97218 7.15495 7.54303 7.55416 7.89102 7.91831 8.46161 8.63930 9.01033 9.07137 9.48997 10.99103 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.004683 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.764842 B = 5978.236973 C = 8341.504142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.003 3.997 3 H 0.039 0.961 4 C -0.509 4.509 5 H 0.087 0.913 6 C 0.077 3.923 7 N -0.885 5.885 8 Si 0.860 3.140 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.257 1.257 12 C 0.521 3.479 13 O -0.509 6.509 14 N -0.626 5.626 15 C 0.109 3.891 16 C -0.139 4.139 17 C -0.115 4.115 18 C -0.128 4.128 19 C 0.135 3.865 20 H 0.068 0.932 21 C 0.136 3.864 22 N -0.681 5.681 23 C 0.529 3.471 24 O -0.555 6.555 25 C -0.108 4.108 26 H 0.109 0.891 27 C -0.145 4.145 28 C -0.009 4.009 29 C 0.214 3.786 30 N -0.444 5.444 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.394 0.606 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.120 0.880 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 3.964 19.277 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 H 0.057 0.943 4 C -0.546 4.546 5 H 0.105 0.895 6 C -0.126 4.126 7 N -0.522 5.522 8 Si 0.686 3.314 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.181 1.181 12 C 0.312 3.688 13 O -0.382 6.382 14 N -0.364 5.364 15 C -0.015 4.015 16 C -0.178 4.178 17 C -0.153 4.153 18 C -0.167 4.167 19 C 0.031 3.969 20 H 0.086 0.914 21 C 0.012 3.988 22 N -0.329 5.329 23 C 0.315 3.685 24 O -0.434 6.434 25 C -0.130 4.130 26 H 0.127 0.873 27 C -0.203 4.203 28 C -0.049 4.049 29 C -0.104 4.104 30 N -0.122 5.122 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.228 0.772 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.138 0.862 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.008 1.975 18.578 18.710 hybrid contribution -0.404 1.763 -0.340 1.841 sum -1.412 3.738 18.238 18.670 Atomic orbital electron populations 1.22068 0.96795 1.00799 0.99623 1.19230 0.93648 0.96595 0.92374 0.94309 1.20783 1.36594 1.09880 0.87392 0.89486 1.24921 0.94711 0.97149 0.95787 1.69985 1.48615 1.35139 0.98440 0.87242 0.78847 0.87025 0.78252 1.20586 1.21274 1.18132 1.21386 0.76393 0.87613 0.83428 1.90743 1.48494 1.15531 1.83468 1.48415 1.64398 1.12273 1.11269 1.21625 0.96037 0.81072 1.02734 1.21886 0.99199 0.98967 0.97700 1.21467 1.00714 0.95726 0.97344 1.21882 0.97869 0.95373 1.01537 1.21352 0.95147 0.92211 0.88177 0.91410 1.21362 0.89441 0.86624 1.01338 1.45612 1.09487 1.07722 1.70121 1.19869 0.89693 0.82578 0.76408 1.90665 1.24278 1.76162 1.52291 1.21198 0.96777 0.93649 1.01412 0.87342 1.21835 0.99210 1.02806 0.96457 1.19099 0.90425 0.89912 1.05485 1.29221 0.94419 0.93818 0.92915 1.81213 1.11005 1.10411 1.09524 0.92950 0.95560 0.92648 0.92608 0.88820 0.92137 0.91041 0.91167 0.91997 0.91799 0.90918 0.90953 0.89276 0.92329 0.77192 0.91678 0.91717 0.91871 0.86169 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.38 37.16 0.31 -2.29 16 2 C 0.00 0.07 1.32 -92.93 -0.12 -0.06 16 3 H 0.04 0.80 4.95 -51.93 -0.26 0.54 16 4 C -0.51 -13.75 8.78 -34.44 -0.30 -14.05 16 5 H 0.09 2.72 7.24 -52.49 -0.38 2.34 16 6 C 0.08 2.12 5.33 -17.82 -0.09 2.03 16 7 N -0.88 -26.45 13.96 55.43 0.77 -25.68 16 8 Si 0.86 19.78 25.83 -169.99 -4.39 15.39 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.26 -5.30 5.57 56.52 0.31 -4.98 16 12 C 0.52 9.78 6.39 -10.99 -0.07 9.71 16 13 O -0.51 -10.64 9.43 5.56 0.05 -10.59 16 14 N -0.63 -8.78 2.98 -165.48 -0.49 -9.28 16 15 C 0.11 1.27 5.92 -3.93 -0.02 1.25 16 16 C -0.14 -1.36 6.06 -26.83 -0.16 -1.53 16 17 C -0.11 -0.97 5.88 -26.69 -0.16 -1.13 16 18 C -0.13 -1.24 5.35 -26.61 -0.14 -1.39 16 19 C 0.14 1.57 2.91 -67.60 -0.20 1.37 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 21 C 0.14 1.93 4.31 -4.04 -0.02 1.91 16 22 N -0.68 -9.57 3.04 -60.30 -0.18 -9.75 16 23 C 0.53 7.88 6.81 -10.99 -0.07 7.80 16 24 O -0.55 -10.03 15.92 5.56 0.09 -9.94 16 25 C -0.11 -1.25 2.70 -91.77 -0.25 -1.50 16 26 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 27 C -0.15 -1.31 8.90 37.16 0.33 -0.98 16 28 C -0.01 -0.10 4.53 -29.52 -0.13 -0.23 16 29 C 0.21 2.67 14.40 -20.76 -0.30 2.37 16 30 N -0.44 -6.70 18.54 42.16 0.78 -5.92 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.41 7.49 -51.93 -0.39 0.02 16 33 H 0.05 1.13 5.16 -51.93 -0.27 0.86 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.09 1.24 5.11 -51.93 -0.27 0.98 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.65 6.42 -51.93 -0.33 1.31 16 44 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.39 5.06 7.41 -40.82 -0.30 4.76 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 48 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 49 H 0.12 1.38 7.95 -51.93 -0.41 0.96 16 50 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -33.57 388.21 -7.02 -40.59 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.10 Total: 6.04 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.40 Total: 3.29 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.88 Total: -50.63 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.14 Total: -20.53 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.39 Total: 15.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.57 -7.02 -40.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876308071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.606 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds