Wall clock time and date at job start Tue Mar 31 2020 19:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.50700 * 109.47131 * 239.99636 * 2 1 3 5 5 H 1.07998 * 120.00363 * 245.33659 * 4 2 1 6 6 C 1.37882 * 119.99579 * 65.34373 * 4 2 1 7 7 N 1.31514 * 119.99658 * 196.74695 * 6 4 2 8 8 Si 1.86796 * 120.00392 * 16.47385 * 6 4 2 9 9 H 1.48502 * 109.46918 * 92.71720 * 8 6 4 10 10 H 1.48494 * 109.47473 * 212.71944 * 8 6 4 11 11 H 1.48506 * 109.46839 * 332.72213 * 8 6 4 12 12 C 1.50694 * 109.47177 * 120.00104 * 2 1 3 13 13 O 1.21277 * 120.00465 * 94.13375 * 12 2 1 14 14 N 1.34783 * 120.00111 * 274.13668 * 12 2 1 15 15 C 1.46930 * 120.62501 * 4.28836 * 14 12 2 16 16 C 1.52762 * 109.00710 * 233.58582 * 15 14 12 17 17 C 1.53039 * 109.38462 * 305.59329 * 16 15 14 18 18 C 1.53033 * 109.54046 * 61.23869 * 17 16 15 19 19 C 1.46921 * 120.63219 * 184.57525 * 14 12 2 20 20 H 1.09001 * 109.58751 * 246.15152 * 19 14 12 21 21 C 1.52998 * 109.58779 * 6.43454 * 19 14 12 22 22 N 1.46500 * 109.47108 * 287.91487 * 21 19 14 23 23 C 1.34780 * 119.99766 * 184.49614 * 22 21 19 24 24 O 1.21283 * 120.00077 * 359.97438 * 23 22 21 25 25 C 1.50695 * 119.99592 * 180.02562 * 23 22 21 26 26 H 1.09002 * 109.47843 * 59.99977 * 25 23 22 27 27 C 1.53001 * 109.47466 * 299.99881 * 25 23 22 28 28 C 1.53001 * 109.46936 * 180.02562 * 25 23 22 29 29 C 1.47201 * 109.46944 * 185.00028 * 28 25 23 30 30 N 8.51605 * 77.23782 * 168.93262 * 2 1 3 31 31 H 1.09004 * 109.47190 * 183.74448 * 1 2 3 32 32 H 1.09000 * 109.47734 * 303.74874 * 1 2 3 33 33 H 1.09002 * 109.47239 * 63.74880 * 1 2 3 34 34 H 0.97004 * 119.99888 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.58999 * 353.42183 * 15 14 12 36 36 H 1.09001 * 109.58443 * 113.84847 * 15 14 12 37 37 H 1.09002 * 109.56334 * 185.55875 * 16 15 14 38 38 H 1.08997 * 109.38643 * 65.52184 * 16 15 14 39 39 H 1.09007 * 109.45675 * 301.21898 * 17 16 15 40 40 H 1.09002 * 109.44860 * 181.25607 * 17 16 15 41 41 H 1.09003 * 109.50060 * 178.68473 * 18 17 16 42 42 H 1.09004 * 109.49499 * 58.58868 * 18 17 16 43 43 H 1.08999 * 109.46987 * 47.91666 * 21 19 14 44 44 H 1.08998 * 109.47187 * 167.91557 * 21 19 14 45 45 H 0.96994 * 119.99938 * 4.49857 * 22 21 19 46 46 H 1.09003 * 109.47080 * 300.00470 * 27 25 23 47 47 H 1.09002 * 109.47025 * 59.99581 * 27 25 23 48 48 H 1.08994 * 109.47748 * 180.02562 * 27 25 23 49 49 H 1.09001 * 109.46894 * 304.99588 * 28 25 23 50 50 H 1.08996 * 109.47242 * 65.00116 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5803 -1.6361 -1.1337 6 6 1.7924 -0.1787 -2.4797 7 7 1.9261 -0.9299 -3.5509 8 14 1.2701 1.6066 -2.6504 9 1 2.4707 2.4561 -2.8559 10 1 0.3593 1.7469 -3.8147 11 1 0.5652 2.0363 -1.4159 12 6 2.0323 -0.7104 1.2304 13 8 2.3058 -1.8908 1.1799 14 7 2.1776 -0.0339 2.3871 15 6 1.7625 1.3718 2.4892 16 6 2.9346 2.1999 3.0128 17 6 3.4371 1.5954 4.3259 18 6 3.9257 0.1666 4.0777 19 6 2.7597 -0.6863 3.5678 20 1 2.0028 -0.7738 4.3473 21 6 3.2669 -2.0786 3.1868 22 7 2.1257 -2.9696 2.9627 23 6 2.3316 -4.2761 2.7036 24 8 3.4616 -4.7140 2.6554 25 6 1.1578 -5.1924 2.4726 26 1 0.5856 -4.8407 1.6141 27 6 0.2633 -5.1983 3.7138 28 6 1.6637 -6.6109 2.2024 29 6 0.5265 -7.4802 1.8588 30 7 -0.3513 -8.1512 1.5944 31 1 -0.3634 -1.0255 0.0671 32 1 -0.3634 0.5709 0.8545 33 1 -0.3634 0.4545 -0.9217 34 1 1.7570 -0.5559 -4.4298 35 1 1.4683 1.7384 1.5058 36 1 0.9226 1.4556 3.1790 37 1 2.6085 3.2255 3.1858 38 1 3.7393 2.1931 2.2777 39 1 2.6251 1.5804 5.0529 40 1 4.2590 2.1984 4.7119 41 1 4.3051 -0.2551 5.0085 42 1 4.7210 0.1784 3.3323 43 1 3.8604 -2.0120 2.2750 44 1 3.8836 -2.4740 3.9938 45 1 1.2221 -2.6192 3.0009 46 1 0.8355 -5.5501 4.5723 47 1 -0.0970 -4.1879 3.9068 48 1 -0.5855 -5.8615 3.5470 49 1 2.3706 -6.5927 1.3729 50 1 2.1590 -6.9959 3.0937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876308071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:20 Heat of formation + Delta-G solvation = -48.629772 kcal Electronic energy + Delta-G solvation = -30896.323447 eV Core-core repulsion = 26923.594063 eV Total energy + Delta-G solvation = -3972.729385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74916 -40.48518 -38.24164 -37.95781 -36.34742 -35.24752 -35.12836 -33.84930 -32.89461 -32.17985 -29.15481 -27.74694 -27.13787 -25.82544 -24.56816 -24.39639 -22.63358 -21.47439 -20.95044 -19.68471 -18.88225 -18.76159 -17.79302 -17.28593 -16.95207 -16.83601 -16.58451 -16.29353 -15.87693 -15.54925 -15.27663 -15.11463 -14.94731 -14.59621 -14.52163 -14.42769 -14.17821 -13.93737 -13.83465 -13.76347 -13.50273 -13.37046 -13.18816 -13.08921 -12.97277 -12.85432 -12.73410 -12.49922 -12.21618 -12.06847 -12.03309 -11.98106 -11.78148 -11.51599 -11.50688 -11.43209 -11.22759 -10.66461 -10.55466 -9.91619 -9.58414 -9.20409 -8.27122 -6.27266 1.36511 1.40052 1.49814 1.63543 1.75487 1.83572 2.04429 2.22443 2.37882 2.44170 3.06854 3.08465 3.63058 3.70764 3.93884 3.95112 4.01552 4.06654 4.20046 4.25552 4.30651 4.35912 4.39147 4.49863 4.59016 4.70292 4.74447 4.77117 4.77609 4.84472 4.85432 4.88004 4.94716 5.05139 5.05586 5.08649 5.15209 5.20196 5.25219 5.28407 5.31324 5.55231 5.56795 5.63722 5.72467 5.87451 6.28371 6.51799 6.63293 6.75792 6.85835 7.32420 7.48160 7.62883 8.90610 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.004683 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.764842 B = 5978.236973 C = 8341.504142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.000 4.000 3 H 0.056 0.944 4 C -0.513 4.513 5 H 0.022 0.978 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.933 3.067 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.210 1.210 12 C 0.517 3.483 13 O -0.544 6.544 14 N -0.616 5.616 15 C 0.099 3.901 16 C -0.138 4.138 17 C -0.109 4.109 18 C -0.126 4.126 19 C 0.139 3.861 20 H 0.103 0.897 21 C 0.139 3.861 22 N -0.673 5.673 23 C 0.521 3.479 24 O -0.594 6.594 25 C -0.102 4.102 26 H 0.094 0.906 27 C -0.137 4.137 28 C -0.004 4.004 29 C 0.240 3.760 30 N -0.487 5.487 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.401 0.599 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.111 0.889 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 7.318 23.178 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 H 0.073 0.927 4 C -0.551 4.551 5 H 0.040 0.960 6 C -0.185 4.185 7 N -0.586 5.586 8 Si 0.756 3.244 9 H -0.203 1.203 10 H -0.217 1.217 11 H -0.132 1.132 12 C 0.306 3.694 13 O -0.420 6.420 14 N -0.352 5.352 15 C -0.023 4.023 16 C -0.176 4.176 17 C -0.146 4.146 18 C -0.165 4.165 19 C 0.036 3.964 20 H 0.121 0.879 21 C 0.015 3.985 22 N -0.321 5.321 23 C 0.308 3.692 24 O -0.476 6.476 25 C -0.124 4.124 26 H 0.112 0.888 27 C -0.195 4.195 28 C -0.044 4.044 29 C -0.077 4.077 30 N -0.165 5.165 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.236 0.764 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.129 0.871 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.659 5.386 22.550 23.337 hybrid contribution 0.229 0.665 -1.542 1.695 sum -2.430 6.052 21.008 21.997 Atomic orbital electron populations 1.21931 0.94766 1.00761 1.01159 1.19164 0.95156 0.96666 0.91197 0.92677 1.20949 1.35673 1.08077 0.90448 0.95961 1.25934 0.94953 1.02606 0.94993 1.70174 1.51326 1.37893 0.99228 0.86065 0.78741 0.79700 0.79907 1.20317 1.21677 1.13199 1.20956 0.76799 0.87222 0.84386 1.90754 1.50050 1.16999 1.84232 1.48302 1.63165 1.13317 1.10367 1.21933 0.98023 0.79234 1.03091 1.21891 0.97718 1.00201 0.97768 1.21463 1.01931 0.94233 0.96988 1.21908 0.96297 0.96519 1.01727 1.21557 0.96708 0.90518 0.87567 0.87891 1.21265 0.89304 0.88742 0.99191 1.45586 1.09846 1.07477 1.69194 1.20411 0.89969 0.83195 0.75625 1.90639 1.25967 1.76910 1.54069 1.21144 0.95791 0.93095 1.02398 0.88789 1.21811 0.98673 1.03769 0.95243 1.19157 0.89605 0.89386 1.06234 1.29349 0.93803 0.92912 0.91586 1.81235 1.12340 1.11889 1.11015 0.94420 0.90789 0.93614 0.92712 0.90185 0.88645 0.88417 0.93561 0.89695 0.90432 0.88549 0.93484 0.94528 0.91139 0.76367 0.90182 0.90519 0.91660 0.87138 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.38 71.98 0.60 -4.08 16 2 C 0.00 -0.01 1.32 -12.29 -0.02 -0.02 16 3 H 0.06 2.16 4.95 -2.39 -0.01 2.14 16 4 C -0.51 -29.18 8.78 25.60 0.22 -28.96 16 5 H 0.02 1.51 7.24 -2.91 -0.02 1.49 16 6 C 0.01 0.70 5.33 84.66 0.45 1.15 16 7 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.93 40.81 25.83 68.60 1.77 42.59 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.21 -7.54 5.57 99.48 0.55 -6.99 16 12 C 0.52 19.43 6.39 87.65 0.56 19.99 16 13 O -0.54 -23.91 9.43 -3.02 -0.03 -23.94 16 14 N -0.62 -15.88 2.98 -795.85 -2.37 -18.25 16 15 C 0.10 1.88 5.92 86.22 0.51 2.39 16 16 C -0.14 -2.12 6.06 30.53 0.19 -1.94 16 17 C -0.11 -1.31 5.88 30.62 0.18 -1.13 16 18 C -0.13 -2.07 5.35 30.67 0.16 -1.91 16 19 C 0.14 2.87 2.91 44.98 0.13 3.00 16 20 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 21 C 0.14 3.94 4.31 86.38 0.37 4.31 16 22 N -0.67 -18.86 3.04 -463.06 -1.41 -20.27 16 23 C 0.52 15.89 6.81 87.65 0.60 16.48 16 24 O -0.59 -22.34 15.92 -3.04 -0.05 -22.39 16 25 C -0.10 -2.38 2.70 -11.54 -0.03 -2.41 16 26 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 27 C -0.14 -2.23 8.90 71.98 0.64 -1.59 16 28 C 0.00 -0.08 4.53 28.79 0.13 0.05 16 29 C 0.24 6.01 14.40 89.44 1.29 7.30 16 30 N -0.49 -14.81 18.54 20.01 0.37 -14.44 16 31 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 1.99 7.49 -2.39 -0.02 1.97 16 33 H 0.04 1.74 5.16 -2.39 -0.01 1.73 16 34 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.08 1.76 5.11 -2.39 -0.01 1.75 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.04 1.44 6.42 -2.39 -0.02 1.43 16 44 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 45 H 0.40 9.86 7.41 -92.71 -0.69 9.18 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.08 1.07 7.56 -2.39 -0.02 1.05 16 48 H 0.06 1.07 7.38 -2.39 -0.02 1.05 16 49 H 0.11 2.68 7.95 -2.39 -0.02 2.66 16 50 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -82.05 388.21 4.69 -77.36 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.11 Total: 26.27 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.99 Total: 12.64 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.11 Total: -112.52 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.08 Total: -46.33 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.77 Total: 42.59 kcal Total: -82.05 4.69 -77.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876308071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.735 kcal (2) G-P(sol) polarization free energy of solvation -82.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds