Wall clock time and date at job start Tue Mar 31 2020 18:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.74480 * 2 1 4 4 C 1.53804 * 109.76129 * 239.37303 * 2 1 3 5 5 N 1.46963 * 108.58117 * 289.94789 * 4 2 1 6 6 C 1.34771 * 120.59820 * 124.62239 * 5 4 2 7 7 O 1.21615 * 120.00002 * 354.06396 * 6 5 4 8 8 C 1.47423 * 120.00125 * 174.06724 * 6 5 4 9 9 C 1.36091 * 126.45078 * 184.38421 * 8 6 5 10 10 O 1.34251 * 106.95457 * 179.97438 * 9 8 6 11 11 C 1.34055 * 108.22421 * 0.02562 * 10 9 8 12 12 C 1.50697 * 125.37821 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47410 * 239.97458 * 12 11 10 14 14 C 1.52998 * 109.47410 * 359.97438 * 12 11 10 15 15 C 1.53006 * 109.47236 * 119.97541 * 12 11 10 16 16 N 1.29939 * 109.24051 * 359.71931 * 11 10 9 17 17 C 1.46972 * 118.80800 * 304.64709 * 5 4 2 18 18 C 1.53368 * 108.63541 * 55.22511 * 17 5 4 19 19 H 1.09000 * 109.75169 * 70.40037 * 18 17 5 20 20 C 1.52999 * 109.60766 * 190.83386 * 18 17 5 21 21 N 1.46958 * 109.61247 * 120.42354 * 2 1 3 22 22 C 1.36942 * 120.59746 * 244.54154 * 21 2 1 23 23 H 1.07999 * 119.99996 * 299.35571 * 22 21 2 24 24 C 1.38813 * 119.99844 * 119.34831 * 22 21 2 25 25 N 1.31623 * 119.99916 * 170.14128 * 24 22 21 26 26 Si 1.86798 * 119.99934 * 350.13723 * 24 22 21 27 27 H 1.48496 * 109.47485 * 274.76084 * 26 24 22 28 28 H 1.48500 * 109.47238 * 34.76897 * 26 24 22 29 29 H 1.48509 * 109.46617 * 154.76411 * 26 24 22 30 30 H 1.09000 * 109.47186 * 299.57306 * 1 2 3 31 31 H 1.08998 * 109.47220 * 59.57771 * 1 2 3 32 32 H 1.09000 * 109.47079 * 179.57785 * 1 2 3 33 33 H 1.09001 * 109.74627 * 170.15320 * 4 2 1 34 34 H 1.09007 * 109.67878 * 49.69559 * 4 2 1 35 35 H 1.08008 * 126.52277 * 359.97438 * 9 8 6 36 36 H 1.09003 * 109.47053 * 59.99467 * 13 12 11 37 37 H 1.08994 * 109.47713 * 180.02562 * 13 12 11 38 38 H 1.09006 * 109.46761 * 299.99749 * 13 12 11 39 39 H 1.09001 * 109.46787 * 59.99705 * 14 12 11 40 40 H 1.08992 * 109.47464 * 179.97438 * 14 12 11 41 41 H 1.08993 * 109.47075 * 300.00106 * 14 12 11 42 42 H 1.08997 * 109.47335 * 59.99699 * 15 12 11 43 43 H 1.08992 * 109.47562 * 180.02562 * 15 12 11 44 44 H 1.09005 * 109.46522 * 300.00041 * 15 12 11 45 45 H 1.09004 * 109.60722 * 295.47389 * 17 5 4 46 46 H 1.09002 * 109.74844 * 175.05223 * 17 5 4 47 47 H 1.09000 * 109.47172 * 179.14656 * 20 18 17 48 48 H 1.08998 * 109.46930 * 299.14155 * 20 18 17 49 49 H 1.08997 * 109.47660 * 59.14281 * 20 18 17 50 50 H 0.96997 * 119.99550 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0500 -0.7374 -1.2455 5 7 1.7611 -2.1706 -1.0960 6 6 1.0603 -2.8312 -2.0388 7 8 0.5687 -2.2219 -2.9695 8 6 0.8897 -4.2923 -1.9419 9 6 0.2839 -5.0980 -2.8562 10 8 0.3476 -6.3506 -2.3774 11 6 0.9780 -6.3158 -1.1948 12 6 1.2589 -7.5105 -0.3203 13 6 0.5804 -7.3195 1.0376 14 6 0.7124 -8.7727 -0.9904 15 6 2.7692 -7.6523 -0.1203 16 7 1.3133 -5.0899 -0.9242 17 6 2.2495 -2.8704 0.1006 18 6 1.7343 -2.1342 1.3435 19 1 0.6587 -2.2824 1.4399 20 6 2.4407 -2.6730 2.5891 21 7 2.0233 -0.7010 1.1937 22 6 2.7345 -0.0296 2.1522 23 1 3.6703 0.4451 1.8967 24 6 2.2525 0.0409 3.4520 25 7 3.0181 0.5128 4.4131 26 14 0.5174 -0.5338 3.8373 27 1 -0.4392 0.5724 3.5794 28 1 0.1772 -1.6937 2.9747 29 1 0.4349 -0.9370 5.2642 30 1 -0.3633 0.5072 0.8938 31 1 -0.3633 0.5204 -0.8862 32 1 -0.3633 -1.0276 -0.0076 33 1 3.1258 -0.5889 -1.3391 34 1 1.5493 -0.3542 -2.1347 35 1 -0.1631 -4.7885 -3.7895 36 1 -0.4955 -7.2184 0.8951 37 1 0.7839 -8.1834 1.6703 38 1 0.9698 -6.4202 1.5150 39 1 1.1958 -8.9088 -1.9578 40 1 0.9160 -9.6369 -0.3581 41 1 -0.3634 -8.6717 -1.1328 42 1 3.1585 -6.7531 0.3570 43 1 2.9725 -8.5167 0.5117 44 1 3.2525 -7.7884 -1.0878 45 1 3.3395 -2.8738 0.1029 46 1 1.8805 -3.8961 0.1037 47 1 2.0840 -2.1380 3.4691 48 1 2.2249 -3.7359 2.6979 49 1 3.5164 -2.5292 2.4876 50 1 2.6812 0.5624 5.3213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880466093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:50 Heat of formation + Delta-G solvation = 6.857357 kcal Electronic energy + Delta-G solvation = -31541.975857 eV Core-core repulsion = 27571.652575 eV Total energy + Delta-G solvation = -3970.323282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.57667 -41.17059 -39.09325 -37.92646 -36.20896 -35.66592 -34.27943 -33.60663 -31.00606 -30.13371 -28.32086 -28.19732 -28.03888 -27.51689 -25.47880 -24.44041 -24.30990 -22.80859 -21.63430 -20.58191 -20.03525 -19.00549 -18.08462 -17.88707 -17.73728 -17.27202 -16.81430 -16.35675 -16.28505 -16.04035 -15.41228 -15.22661 -15.05417 -14.89972 -14.86560 -14.44132 -14.32028 -14.26702 -13.82799 -13.43287 -13.24395 -13.21449 -13.07396 -13.05479 -12.65576 -12.58304 -12.56850 -12.48165 -12.42207 -12.27612 -11.98621 -11.94571 -11.88747 -11.79837 -11.72728 -11.45894 -11.33944 -10.66882 -10.58940 -10.13886 -9.73775 -8.32489 -8.11107 -5.90647 0.05481 0.90317 1.31618 1.38848 1.47925 1.50665 1.91274 2.18020 2.40081 2.68584 3.10751 3.26786 3.46072 3.69186 3.90744 3.93764 4.00404 4.08023 4.10261 4.32682 4.39584 4.42586 4.46022 4.49467 4.58001 4.63804 4.68443 4.73484 4.77098 4.77743 4.83068 4.87329 4.92056 4.98023 4.98520 5.01776 5.05250 5.07782 5.19210 5.28003 5.33654 5.37355 5.38492 5.42056 5.56208 5.69961 5.99338 6.30564 6.35170 6.51300 7.01071 7.10882 7.55032 8.17570 8.96682 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.004492 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.234421 B = 6231.236583 C = 7539.522377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.147 3.853 3 H 0.077 0.923 4 C 0.108 3.892 5 N -0.582 5.582 6 C 0.593 3.407 7 O -0.572 6.572 8 C -0.096 4.096 9 C 0.030 3.970 10 O -0.186 6.186 11 C 0.214 3.786 12 C 0.030 3.970 13 C -0.142 4.142 14 C -0.143 4.143 15 C -0.140 4.140 16 N -0.473 5.473 17 C 0.069 3.931 18 C 0.151 3.849 19 H 0.028 0.972 20 C -0.126 4.126 21 N -0.606 5.606 22 C -0.261 4.261 23 H 0.029 0.971 24 C 0.019 3.981 25 N -0.944 5.944 26 Si 0.926 3.074 27 H -0.301 1.301 28 H -0.231 1.231 29 H -0.302 1.302 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.258 0.742 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.160 0.840 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.049 0.951 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.593 -21.831 -12.290 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.040 3.960 3 H 0.095 0.905 4 C -0.015 4.015 5 N -0.311 5.311 6 C 0.382 3.618 7 O -0.454 6.454 8 C -0.215 4.215 9 C -0.044 4.044 10 O -0.072 6.072 11 C 0.005 3.995 12 C 0.028 3.972 13 C -0.200 4.200 14 C -0.200 4.200 15 C -0.197 4.197 16 N -0.202 5.202 17 C -0.055 4.055 18 C 0.046 3.954 19 H 0.046 0.954 20 C -0.184 4.184 21 N -0.332 5.332 22 C -0.391 4.391 23 H 0.047 0.953 24 C -0.179 4.179 25 N -0.586 5.586 26 Si 0.755 3.245 27 H -0.229 1.229 28 H -0.155 1.155 29 H -0.229 1.229 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.274 0.726 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.176 0.824 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.068 0.932 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.464 -21.292 -12.047 25.067 hybrid contribution -0.791 0.777 0.192 1.125 sum -6.255 -20.516 -11.855 24.507 Atomic orbital electron populations 1.22045 0.97406 1.00308 1.00769 1.21270 0.92518 0.95862 0.86317 0.90478 1.22178 1.00340 0.79806 0.99221 1.47828 1.52276 1.10203 1.20831 1.17127 0.78058 0.84835 0.81825 1.90742 1.50964 1.68530 1.35118 1.21670 1.08956 0.95127 0.95699 1.25710 0.98742 0.79430 1.00516 1.84427 1.59905 1.30552 1.32274 1.27200 0.92498 0.95636 0.84154 1.19464 0.98663 0.86955 0.92073 1.21958 1.00224 1.03865 0.93934 1.21921 1.01444 0.95301 1.01326 1.21936 0.91035 1.03760 1.02987 1.70199 1.22858 1.01394 1.25780 1.23427 0.98688 1.00606 0.82788 1.21209 0.96028 0.84230 0.93977 0.95433 1.21781 1.00568 0.99444 0.96609 1.44446 1.63170 1.04029 1.21523 1.18245 1.01011 1.30836 0.88997 0.95347 1.26489 0.99591 0.95346 0.96495 1.69917 1.38082 1.49345 1.01266 0.86445 0.81928 0.79746 0.76426 1.22933 1.15511 1.22921 0.94565 0.91158 0.94572 0.91563 0.88805 0.72624 0.92408 0.88278 0.92725 0.91709 0.88657 0.91906 0.92626 0.88365 0.92177 0.93115 0.82388 0.94414 0.90786 0.93163 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.67 9.14 71.98 0.66 -5.02 16 2 C 0.15 6.04 3.33 45.17 0.15 6.19 16 3 H 0.08 3.24 7.93 -2.38 -0.02 3.22 16 4 C 0.11 3.96 6.00 86.56 0.52 4.48 16 5 N -0.58 -21.15 2.59 -821.01 -2.13 -23.28 16 6 C 0.59 20.45 7.68 86.66 0.67 21.12 16 7 O -0.57 -21.31 16.31 -4.08 -0.07 -21.38 16 8 C -0.10 -2.75 6.75 40.41 0.27 -2.47 16 9 C 0.03 0.64 11.95 67.32 0.80 1.44 16 10 O -0.19 -3.64 10.11 0.39 0.00 -3.64 16 11 C 0.21 4.47 6.44 88.39 0.57 5.04 16 12 C 0.03 0.42 0.99 -52.93 -0.05 0.37 16 13 C -0.14 -1.99 8.46 71.98 0.61 -1.38 16 14 C -0.14 -1.32 8.01 71.98 0.58 -0.74 16 15 C -0.14 -1.82 8.45 71.98 0.61 -1.21 16 16 N -0.47 -12.70 7.67 -293.03 -2.25 -14.95 16 17 C 0.07 2.51 5.72 86.41 0.49 3.00 16 18 C 0.15 6.35 1.97 45.03 0.09 6.44 16 19 H 0.03 1.24 5.68 -2.39 -0.01 1.23 16 20 C -0.13 -5.28 7.62 71.98 0.55 -4.73 16 21 N -0.61 -28.42 1.83 -649.90 -1.19 -29.61 16 22 C -0.26 -14.51 8.71 84.03 0.73 -13.78 16 23 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 24 C 0.02 1.11 4.37 84.86 0.37 1.48 16 25 N -0.94 -57.78 13.97 21.65 0.30 -57.47 16 26 Si 0.93 45.98 24.87 68.60 1.71 47.68 16 27 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 28 H -0.23 -10.62 4.27 99.48 0.42 -10.19 16 29 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 30 H 0.04 1.49 7.87 -2.39 -0.02 1.47 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.04 1.43 7.01 -2.39 -0.02 1.42 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.09 3.25 6.97 -2.38 -0.02 3.24 16 35 H 0.26 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.05 1.93 8.12 -2.39 -0.02 1.91 16 46 H 0.16 5.30 3.75 -51.34 -0.19 5.11 16 47 H 0.04 1.75 3.17 -2.39 -0.01 1.75 16 48 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.05 2.21 7.91 -2.39 -0.02 2.19 16 50 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -70.44 381.94 4.46 -65.98 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.46 Total: 16.45 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 7.61 Total: 20.21 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -5.26 Total: -125.30 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.71 Total: 47.68 kcal Total: -70.44 4.46 -65.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880466093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.833 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds