Wall clock time and date at job start Tue Mar 31 2020 18:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.60809 * 2 1 4 4 C 1.53364 * 109.60915 * 239.65633 * 2 1 3 5 5 N 1.46968 * 108.63360 * 190.65885 * 4 2 1 6 6 C 1.34774 * 120.59333 * 235.20330 * 5 4 2 7 7 O 1.21589 * 120.00122 * 174.68031 * 6 5 4 8 8 N 1.34773 * 120.00217 * 354.95334 * 6 5 4 9 9 C 1.46500 * 120.00102 * 184.65531 * 8 6 5 10 10 H 1.08996 * 110.66927 * 36.75876 * 9 8 6 11 11 C 1.55001 * 110.74663 * 273.54380 * 9 8 6 12 12 C 1.55820 * 102.78949 * 241.67481 * 11 9 8 13 13 H 1.08998 * 115.39125 * 158.11234 * 12 11 9 14 14 O 1.46538 * 101.24163 * 32.41836 * 12 11 9 15 15 C 1.46529 * 99.68316 * 305.83757 * 14 12 11 16 16 H 1.09001 * 116.26061 * 179.97438 * 15 14 12 17 17 C 1.58368 * 101.09479 * 306.46515 * 15 14 12 18 18 H 1.09000 * 119.09274 * 171.89412 * 17 15 14 19 19 C 1.56908 * 116.82080 * 330.83255 * 17 15 14 20 20 C 1.53002 * 60.00150 * 88.76811 * 19 17 15 21 21 H 1.09000 * 120.22639 * 113.71147 * 20 19 17 22 22 C 1.46962 * 118.80999 * 55.48157 * 5 4 2 23 23 C 1.53810 * 108.39816 * 304.48192 * 22 5 4 24 24 H 1.09003 * 109.53338 * 169.30971 * 23 22 5 25 25 C 1.53004 * 109.73844 * 289.84772 * 23 22 5 26 26 N 1.46960 * 108.57892 * 49.63690 * 23 22 5 27 27 C 1.36939 * 120.58987 * 124.63146 * 26 23 22 28 28 H 1.08010 * 119.99541 * 209.33182 * 27 26 23 29 29 C 1.38803 * 120.00374 * 29.32550 * 27 26 23 30 30 N 1.31617 * 120.00008 * 16.18892 * 29 27 26 31 31 Si 1.86810 * 120.00033 * 196.18554 * 29 27 26 32 32 H 1.48501 * 109.46682 * 0.02562 * 31 29 27 33 33 H 1.48496 * 109.46829 * 120.00015 * 31 29 27 34 34 H 1.48501 * 109.46843 * 240.00020 * 31 29 27 35 35 H 1.08995 * 109.47344 * 180.34663 * 1 2 3 36 36 H 1.09002 * 109.46821 * 300.34352 * 1 2 3 37 37 H 1.09001 * 109.46888 * 60.33684 * 1 2 3 38 38 H 1.09006 * 109.61029 * 70.91644 * 4 2 1 39 39 H 1.09006 * 109.75275 * 310.48667 * 4 2 1 40 40 H 0.97003 * 120.00122 * 4.64928 * 8 6 5 41 41 H 1.09001 * 110.74746 * 0.02562 * 11 9 8 42 42 H 1.09002 * 110.74864 * 123.16468 * 11 9 8 43 43 H 1.08995 * 118.39272 * 341.77779 * 19 17 15 44 44 H 1.08996 * 116.94762 * 196.39389 * 19 17 15 45 45 H 1.09002 * 109.61382 * 64.26704 * 22 5 4 46 46 H 1.09004 * 109.60745 * 184.77224 * 22 5 4 47 47 H 1.09003 * 109.46871 * 179.15626 * 25 23 22 48 48 H 1.09001 * 109.47453 * 299.15571 * 25 23 22 49 49 H 1.09001 * 109.46982 * 59.16433 * 25 23 22 50 50 H 0.96998 * 120.00115 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8959 1.0269 0.0000 4 6 2.0447 -0.7298 -1.2468 5 7 3.4916 -0.9436 -1.1020 6 6 4.3475 -0.5055 -2.0464 7 8 5.5469 -0.6012 -1.8713 8 7 3.8741 0.0437 -3.1825 9 6 4.7993 0.4264 -4.2520 10 1 5.6171 -0.2902 -4.3280 11 6 5.3441 1.8589 -4.0202 12 6 4.8354 2.6288 -5.2758 13 1 4.7717 3.7113 -5.1662 14 8 3.5681 1.9414 -5.5383 15 6 4.0480 0.5588 -5.6107 16 1 3.2937 -0.2040 -5.8035 17 6 5.1946 0.6907 -6.6951 18 1 5.8482 -0.1615 -6.8817 19 6 5.0206 1.8142 -7.7765 20 6 5.7234 2.1276 -6.4541 21 1 6.7841 2.3782 -6.4423 22 6 3.9877 -1.6490 0.0879 23 6 3.4734 -0.9142 1.3375 24 1 3.6670 -1.5207 2.2223 25 6 4.1812 0.4357 1.4711 26 7 2.0267 -0.7005 1.1927 27 6 1.1569 -1.1463 2.1518 28 1 0.1504 -1.4277 1.8792 29 6 1.5688 -1.2368 3.4743 30 7 2.6574 -0.6110 3.8688 31 14 0.5780 -2.2467 4.6942 32 1 -0.5926 -2.8464 4.0048 33 1 1.4313 -3.3272 5.2506 34 1 0.1082 -1.3696 5.7966 35 1 -0.3634 -1.0276 0.0062 36 1 -0.3633 0.5192 0.8869 37 1 -0.3633 0.5086 -0.8930 38 1 1.8513 -0.1234 -2.1317 39 1 1.5409 -1.6915 -1.3450 40 1 2.9208 0.1855 -3.2921 41 1 4.9276 2.2876 -3.1088 42 1 6.4334 1.8560 -3.9806 43 1 4.0277 2.2369 -7.9295 44 1 5.6413 1.7408 -8.6694 45 1 3.6187 -2.6747 0.0856 46 1 5.0777 -1.6498 0.0847 47 1 3.8028 0.9589 2.3492 48 1 5.2539 0.2745 1.5783 49 1 3.9910 1.0353 0.5809 50 1 2.9455 -0.6744 4.7928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897908495.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:00 Heat of formation + Delta-G solvation = 23.890263 kcal Electronic energy + Delta-G solvation = -30977.496976 eV Core-core repulsion = 27007.912296 eV Total energy + Delta-G solvation = -3969.584680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56080 -39.78503 -37.43236 -34.95348 -34.06893 -33.85609 -32.60391 -31.41000 -30.50390 -28.98688 -27.86947 -26.28518 -25.34472 -23.91287 -23.60412 -21.97232 -20.92787 -20.76672 -20.22287 -19.94946 -18.70996 -17.91135 -17.24592 -16.27190 -16.06081 -15.93325 -15.18541 -14.87919 -14.72648 -14.41222 -14.04687 -13.78248 -13.70448 -13.36811 -13.16820 -12.97068 -12.71653 -12.62173 -12.18127 -11.94921 -11.74907 -11.69616 -11.61356 -11.42046 -11.27673 -11.20158 -10.99263 -10.76793 -10.60448 -10.57156 -10.41001 -10.30130 -10.10674 -10.03062 -10.01963 -9.76744 -9.66201 -9.39135 -8.94449 -8.49366 -8.02723 -6.61077 -5.79481 -3.25108 2.86050 3.26808 3.35339 3.44124 3.45069 3.47905 3.58888 4.11370 4.19059 4.30503 4.40774 4.46379 4.51557 4.72827 4.75867 4.94135 5.12485 5.18236 5.32633 5.36054 5.42224 5.45450 5.53149 5.59560 5.64575 5.67078 5.79801 5.86318 5.87225 5.99652 6.04965 6.16332 6.22925 6.26669 6.30743 6.38488 6.50756 6.66222 6.70847 6.82802 6.90725 6.96827 7.07001 7.10106 7.35914 7.64759 7.71057 7.84484 8.34507 8.43375 8.98474 9.19481 9.81170 10.38572 11.27171 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.002845 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.938584 B = 9838.089046 C =10216.702170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.155 3.845 3 H 0.030 0.970 4 C 0.101 3.899 5 N -0.611 5.611 6 C 0.705 3.295 7 O -0.599 6.599 8 N -0.743 5.743 9 C 0.147 3.853 10 H 0.098 0.902 11 C -0.153 4.153 12 C 0.090 3.910 13 H 0.131 0.869 14 O -0.368 6.368 15 C 0.086 3.914 16 H 0.137 0.863 17 C -0.196 4.196 18 H 0.127 0.873 19 C -0.135 4.135 20 C -0.191 4.191 21 H 0.122 0.878 22 C 0.109 3.891 23 C 0.180 3.820 24 H 0.105 0.895 25 C -0.135 4.135 26 N -0.580 5.580 27 C -0.252 4.252 28 H 0.071 0.929 29 C 0.004 3.996 30 N -0.896 5.896 31 Si 0.900 3.100 32 H -0.279 1.279 33 H -0.290 1.290 34 H -0.292 1.292 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.396 0.604 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.028 0.972 49 H 0.020 0.980 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 3.642 -20.381 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.025 4.025 5 N -0.347 5.347 6 C 0.407 3.593 7 O -0.479 6.479 8 N -0.401 5.401 9 C 0.040 3.960 10 H 0.116 0.884 11 C -0.192 4.192 12 C 0.032 3.968 13 H 0.148 0.852 14 O -0.286 6.286 15 C 0.027 3.973 16 H 0.154 0.846 17 C -0.215 4.215 18 H 0.145 0.855 19 C -0.172 4.172 20 C -0.209 4.209 21 H 0.140 0.860 22 C -0.015 4.015 23 C 0.073 3.927 24 H 0.123 0.877 25 C -0.194 4.194 26 N -0.303 5.303 27 C -0.382 4.382 28 H 0.089 0.911 29 C -0.195 4.195 30 N -0.540 5.540 31 Si 0.730 3.270 32 H -0.204 1.204 33 H -0.216 1.216 34 H -0.219 1.219 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.233 0.767 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.047 0.953 49 H 0.040 0.960 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.826 3.629 -20.051 20.733 hybrid contribution -0.598 -0.430 0.715 1.027 sum 3.228 3.198 -19.336 19.863 Atomic orbital electron populations 1.21767 0.95319 1.01685 1.00583 1.20742 0.93095 0.93978 0.87416 0.95255 1.22295 0.80664 1.00431 0.99089 1.47191 1.06058 1.59750 1.21653 1.15858 0.85238 0.78246 0.79973 1.90858 1.13618 1.63840 1.79564 1.45226 1.10226 1.67985 1.16667 1.22235 0.92334 0.96190 0.85223 0.88371 1.23626 1.01878 0.95417 0.98249 1.24264 0.82085 0.98007 0.92403 0.85155 1.90101 1.28178 1.18035 1.92309 1.24918 0.94204 0.85944 0.92199 0.84585 1.25327 1.01766 0.93159 1.01249 0.85512 1.23410 1.02386 0.99793 0.91602 1.24351 1.00396 0.99347 0.96837 0.86033 1.22475 0.99363 0.94773 0.84848 1.20831 0.82749 0.94944 0.94215 0.87712 1.21926 0.97595 0.99304 1.00563 1.44137 1.01956 1.64489 1.19731 1.19201 0.95877 1.36678 0.86415 0.91129 1.25076 0.98079 0.99458 0.96843 1.70008 1.25290 1.42663 1.16068 0.86272 0.79519 0.79882 0.81341 1.20362 1.21649 1.21864 0.92508 0.91618 0.94145 0.92146 0.91753 0.76667 0.89842 0.89843 0.88100 0.88086 0.92607 0.90129 0.90846 0.95328 0.96045 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.95 37.16 0.30 -2.05 16 2 C 0.16 3.03 3.22 -67.49 -0.22 2.82 16 3 H 0.03 0.63 7.40 -51.92 -0.38 0.24 16 4 C 0.10 1.66 5.87 -3.60 -0.02 1.64 16 5 N -0.61 -11.22 2.58 -177.94 -0.46 -11.68 16 6 C 0.71 12.71 8.29 -86.92 -0.72 11.99 16 7 O -0.60 -12.69 15.53 5.29 0.08 -12.61 16 8 N -0.74 -10.37 5.03 -56.18 -0.28 -10.65 16 9 C 0.15 1.76 2.74 -65.36 -0.18 1.58 16 10 H 0.10 1.28 7.67 -51.93 -0.40 0.88 16 11 C -0.15 -1.76 6.30 -24.17 -0.15 -1.91 16 12 C 0.09 0.87 5.61 -23.72 -0.13 0.74 16 13 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 14 O -0.37 -4.15 10.86 -35.23 -0.38 -4.53 16 15 C 0.09 0.84 5.35 -22.26 -0.12 0.72 16 16 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.20 -1.63 6.90 -84.49 -0.58 -2.22 16 18 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 19 C -0.14 -1.02 9.98 -24.62 -0.25 -1.26 16 20 C -0.19 -1.56 6.49 -88.06 -0.57 -2.14 16 21 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 22 C 0.11 2.23 6.01 -3.37 -0.02 2.21 16 23 C 0.18 4.14 2.34 -67.26 -0.16 3.99 16 24 H 0.11 2.73 6.03 -51.93 -0.31 2.41 16 25 C -0.13 -3.12 8.95 37.16 0.33 -2.78 16 26 N -0.58 -13.52 2.68 -156.76 -0.42 -13.94 16 27 C -0.25 -6.41 8.59 -15.06 -0.13 -6.54 16 28 H 0.07 1.76 6.23 -52.48 -0.33 1.43 16 29 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 30 N -0.90 -24.64 10.12 55.49 0.56 -24.08 16 31 Si 0.90 20.94 29.58 -169.99 -5.03 15.91 16 32 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 33 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 34 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 35 H 0.06 0.98 7.33 -51.93 -0.38 0.60 16 36 H 0.06 1.25 7.73 -51.93 -0.40 0.85 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.82 5.61 -51.93 -0.29 0.53 16 39 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 40 H 0.40 4.97 6.09 -40.82 -0.25 4.72 16 41 H 0.08 1.13 7.99 -51.93 -0.41 0.71 16 42 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 43 H 0.10 0.83 7.74 -51.93 -0.40 0.43 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.08 1.68 6.97 -51.93 -0.36 1.32 16 47 H 0.07 1.88 7.18 -51.93 -0.37 1.51 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.02 0.48 7.02 -51.93 -0.36 0.11 16 50 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -30.15 377.82 -10.96 -41.11 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.02 Total: 7.98 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -2.71 Total: 6.81 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.60 Total: -60.36 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.30 Total: -17.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.15 -10.96 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897908495.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.003 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds