Wall clock time and date at job start Tue Mar 31 2020 18:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.60809 * 2 1 4 4 C 1.53364 * 109.60915 * 239.65633 * 2 1 3 5 5 N 1.46968 * 108.63360 * 190.65885 * 4 2 1 6 6 C 1.34774 * 120.59333 * 235.20330 * 5 4 2 7 7 O 1.21589 * 120.00122 * 174.68031 * 6 5 4 8 8 N 1.34773 * 120.00217 * 354.95334 * 6 5 4 9 9 C 1.46500 * 120.00102 * 184.65531 * 8 6 5 10 10 H 1.08996 * 110.66927 * 36.75876 * 9 8 6 11 11 C 1.55001 * 110.74663 * 273.54380 * 9 8 6 12 12 C 1.55820 * 102.78949 * 241.67481 * 11 9 8 13 13 H 1.08998 * 115.39125 * 158.11234 * 12 11 9 14 14 O 1.46538 * 101.24163 * 32.41836 * 12 11 9 15 15 C 1.46529 * 99.68316 * 305.83757 * 14 12 11 16 16 H 1.09001 * 116.26061 * 179.97438 * 15 14 12 17 17 C 1.58368 * 101.09479 * 306.46515 * 15 14 12 18 18 H 1.09000 * 119.09274 * 171.89412 * 17 15 14 19 19 C 1.56908 * 116.82080 * 330.83255 * 17 15 14 20 20 C 1.53002 * 60.00150 * 88.76811 * 19 17 15 21 21 H 1.09000 * 120.22639 * 113.71147 * 20 19 17 22 22 C 1.46962 * 118.80999 * 55.48157 * 5 4 2 23 23 C 1.53810 * 108.39816 * 304.48192 * 22 5 4 24 24 H 1.09003 * 109.53338 * 169.30971 * 23 22 5 25 25 C 1.53004 * 109.73844 * 289.84772 * 23 22 5 26 26 N 1.46960 * 108.57892 * 49.63690 * 23 22 5 27 27 C 1.36939 * 120.58987 * 124.63146 * 26 23 22 28 28 H 1.08010 * 119.99541 * 209.33182 * 27 26 23 29 29 C 1.38803 * 120.00374 * 29.32550 * 27 26 23 30 30 N 1.31617 * 120.00008 * 16.18892 * 29 27 26 31 31 Si 1.86810 * 120.00033 * 196.18554 * 29 27 26 32 32 H 1.48501 * 109.46682 * 0.02562 * 31 29 27 33 33 H 1.48496 * 109.46829 * 120.00015 * 31 29 27 34 34 H 1.48501 * 109.46843 * 240.00020 * 31 29 27 35 35 H 1.08995 * 109.47344 * 180.34663 * 1 2 3 36 36 H 1.09002 * 109.46821 * 300.34352 * 1 2 3 37 37 H 1.09001 * 109.46888 * 60.33684 * 1 2 3 38 38 H 1.09006 * 109.61029 * 70.91644 * 4 2 1 39 39 H 1.09006 * 109.75275 * 310.48667 * 4 2 1 40 40 H 0.97003 * 120.00122 * 4.64928 * 8 6 5 41 41 H 1.09001 * 110.74746 * 0.02562 * 11 9 8 42 42 H 1.09002 * 110.74864 * 123.16468 * 11 9 8 43 43 H 1.08995 * 118.39272 * 341.77779 * 19 17 15 44 44 H 1.08996 * 116.94762 * 196.39389 * 19 17 15 45 45 H 1.09002 * 109.61382 * 64.26704 * 22 5 4 46 46 H 1.09004 * 109.60745 * 184.77224 * 22 5 4 47 47 H 1.09003 * 109.46871 * 179.15626 * 25 23 22 48 48 H 1.09001 * 109.47453 * 299.15571 * 25 23 22 49 49 H 1.09001 * 109.46982 * 59.16433 * 25 23 22 50 50 H 0.96998 * 120.00115 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8959 1.0269 0.0000 4 6 2.0447 -0.7298 -1.2468 5 7 3.4916 -0.9436 -1.1020 6 6 4.3475 -0.5055 -2.0464 7 8 5.5469 -0.6012 -1.8713 8 7 3.8741 0.0437 -3.1825 9 6 4.7993 0.4264 -4.2520 10 1 5.6171 -0.2902 -4.3280 11 6 5.3441 1.8589 -4.0202 12 6 4.8354 2.6288 -5.2758 13 1 4.7717 3.7113 -5.1662 14 8 3.5681 1.9414 -5.5383 15 6 4.0480 0.5588 -5.6107 16 1 3.2937 -0.2040 -5.8035 17 6 5.1946 0.6907 -6.6951 18 1 5.8482 -0.1615 -6.8817 19 6 5.0206 1.8142 -7.7765 20 6 5.7234 2.1276 -6.4541 21 1 6.7841 2.3782 -6.4423 22 6 3.9877 -1.6490 0.0879 23 6 3.4734 -0.9142 1.3375 24 1 3.6670 -1.5207 2.2223 25 6 4.1812 0.4357 1.4711 26 7 2.0267 -0.7005 1.1927 27 6 1.1569 -1.1463 2.1518 28 1 0.1504 -1.4277 1.8792 29 6 1.5688 -1.2368 3.4743 30 7 2.6574 -0.6110 3.8688 31 14 0.5780 -2.2467 4.6942 32 1 -0.5926 -2.8464 4.0048 33 1 1.4313 -3.3272 5.2506 34 1 0.1082 -1.3696 5.7966 35 1 -0.3634 -1.0276 0.0062 36 1 -0.3633 0.5192 0.8869 37 1 -0.3633 0.5086 -0.8930 38 1 1.8513 -0.1234 -2.1317 39 1 1.5409 -1.6915 -1.3450 40 1 2.9208 0.1855 -3.2921 41 1 4.9276 2.2876 -3.1088 42 1 6.4334 1.8560 -3.9806 43 1 4.0277 2.2369 -7.9295 44 1 5.6413 1.7408 -8.6694 45 1 3.6187 -2.6747 0.0856 46 1 5.0777 -1.6498 0.0847 47 1 3.8028 0.9589 2.3492 48 1 5.2539 0.2745 1.5783 49 1 3.9910 1.0353 0.5809 50 1 2.9455 -0.6744 4.7928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897908495.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:59 Heat of formation + Delta-G solvation = 6.070787 kcal Electronic energy + Delta-G solvation = -30978.269687 eV Core-core repulsion = 27007.912296 eV Total energy + Delta-G solvation = -3970.357390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39480 -41.19616 -39.03324 -36.02029 -35.65668 -34.83086 -34.21704 -33.15103 -31.56982 -29.95950 -29.63197 -27.77835 -26.95805 -25.45680 -24.63653 -23.09428 -22.34115 -21.68385 -21.27626 -20.96647 -20.32645 -19.31361 -18.02114 -17.81507 -17.40831 -17.05906 -16.77581 -16.34241 -16.01828 -15.76282 -15.39082 -15.25140 -15.14105 -14.80341 -14.54401 -14.30800 -13.72756 -13.56938 -13.49904 -13.40925 -13.15756 -13.06355 -12.86901 -12.83929 -12.51191 -12.41361 -12.33073 -12.29147 -12.24572 -12.10756 -11.95506 -11.76804 -11.50524 -11.44662 -11.20785 -11.08272 -10.93644 -10.68101 -10.47260 -10.18410 -9.55499 -8.49270 -7.77474 -5.24868 1.48843 1.52632 1.60218 1.63028 2.14379 2.53816 2.58625 2.69599 2.96446 3.36752 3.42619 3.53571 3.58866 3.62168 3.82758 3.91181 4.02752 4.15626 4.17248 4.22258 4.27238 4.34217 4.45892 4.59737 4.61741 4.64163 4.67590 4.71138 4.77857 4.81800 4.87538 4.88460 4.95486 4.96078 5.00084 5.06359 5.11065 5.17701 5.32289 5.35076 5.40225 5.43365 5.56353 5.59202 5.73663 5.76059 5.82335 6.06259 6.47730 7.00226 7.22526 7.57768 7.91754 8.45234 9.26914 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.002845 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.938584 B = 9838.089046 C =10216.702170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.148 3.852 3 H 0.011 0.989 4 C 0.109 3.891 5 N -0.615 5.615 6 C 0.703 3.297 7 O -0.634 6.634 8 N -0.727 5.727 9 C 0.141 3.859 10 H 0.088 0.912 11 C -0.152 4.152 12 C 0.091 3.909 13 H 0.143 0.857 14 O -0.383 6.383 15 C 0.091 3.909 16 H 0.153 0.847 17 C -0.201 4.201 18 H 0.138 0.862 19 C -0.123 4.123 20 C -0.194 4.194 21 H 0.134 0.866 22 C 0.123 3.877 23 C 0.182 3.818 24 H 0.072 0.928 25 C -0.116 4.116 26 N -0.594 5.594 27 C -0.248 4.248 28 H 0.079 0.921 29 C -0.049 4.049 30 N -0.926 5.926 31 Si 0.958 3.042 32 H -0.266 1.266 33 H -0.297 1.297 34 H -0.300 1.300 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.406 0.594 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.030 0.970 49 H 0.020 0.980 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 3.487 -23.546 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.041 3.959 3 H 0.029 0.971 4 C -0.015 4.015 5 N -0.350 5.350 6 C 0.405 3.595 7 O -0.516 6.516 8 N -0.384 5.384 9 C 0.035 3.965 10 H 0.106 0.894 11 C -0.192 4.192 12 C 0.034 3.966 13 H 0.161 0.839 14 O -0.302 6.302 15 C 0.033 3.967 16 H 0.170 0.830 17 C -0.219 4.219 18 H 0.156 0.844 19 C -0.160 4.160 20 C -0.212 4.212 21 H 0.152 0.848 22 C -0.002 4.002 23 C 0.075 3.925 24 H 0.090 0.910 25 C -0.175 4.175 26 N -0.317 5.317 27 C -0.378 4.378 28 H 0.096 0.904 29 C -0.244 4.244 30 N -0.572 5.572 31 Si 0.788 3.212 32 H -0.190 1.190 33 H -0.224 1.224 34 H -0.227 1.227 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.139 0.861 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.039 0.961 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.695 3.488 -23.281 23.695 hybrid contribution -0.248 -0.308 1.645 1.692 sum 2.447 3.181 -21.636 22.005 Atomic orbital electron populations 1.21683 0.93323 1.01976 1.01463 1.20964 0.94794 0.92986 0.87108 0.97105 1.22277 0.79304 1.01215 0.98716 1.47151 1.06956 1.59753 1.21168 1.15985 0.84645 0.78182 0.80668 1.90835 1.15189 1.65183 1.80375 1.45114 1.11027 1.66585 1.15710 1.22411 0.92210 0.95999 0.85842 0.89424 1.23563 1.01818 0.95435 0.98345 1.24355 0.81834 0.98433 0.91974 0.83923 1.90087 1.29038 1.18758 1.92312 1.24995 0.94863 0.85753 0.91077 0.83016 1.25379 1.01371 0.93713 1.01476 0.84392 1.23486 1.02282 0.98399 0.91798 1.24385 1.00829 0.99163 0.96823 0.84842 1.22096 0.98734 0.94759 0.84573 1.20639 0.83230 0.94293 0.94364 0.90980 1.21706 0.97587 0.99273 0.98900 1.44344 1.01740 1.65059 1.20565 1.19510 0.96239 1.35311 0.86751 0.90389 1.25736 0.99244 1.00913 0.98537 1.70165 1.26936 1.44370 1.15748 0.85347 0.78508 0.78163 0.79204 1.19002 1.22397 1.22740 0.92365 0.93935 0.90156 0.88552 0.90645 0.75578 0.92205 0.89826 0.88730 0.86073 0.92080 0.90983 0.93865 0.95075 0.96081 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.95 71.98 0.57 -3.52 16 2 C 0.15 5.60 3.22 45.03 0.15 5.74 16 3 H 0.01 0.47 7.40 -2.38 -0.02 0.45 16 4 C 0.11 3.33 5.87 86.41 0.51 3.84 16 5 N -0.62 -21.90 2.58 -835.14 -2.16 -24.06 16 6 C 0.70 24.68 8.29 179.06 1.48 26.16 16 7 O -0.63 -26.81 15.53 -4.00 -0.06 -26.87 16 8 N -0.73 -18.99 5.03 -449.91 -2.26 -21.26 16 9 C 0.14 3.18 2.74 46.65 0.13 3.31 16 10 H 0.09 2.20 7.67 -2.39 -0.02 2.18 16 11 C -0.15 -3.38 6.30 32.25 0.20 -3.18 16 12 C 0.09 1.59 5.61 32.54 0.18 1.77 16 13 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 14 O -0.38 -7.74 10.86 -148.98 -1.62 -9.36 16 15 C 0.09 1.55 5.35 33.49 0.18 1.73 16 16 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 17 C -0.20 -2.78 6.90 -6.82 -0.05 -2.83 16 18 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 19 C -0.12 -1.46 9.98 31.96 0.32 -1.14 16 20 C -0.19 -2.67 6.49 -9.13 -0.06 -2.73 16 21 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 22 C 0.12 5.03 6.01 86.56 0.52 5.55 16 23 C 0.18 8.60 2.34 45.18 0.11 8.70 16 24 H 0.07 3.90 6.03 -2.39 -0.01 3.89 16 25 C -0.12 -5.53 8.95 71.98 0.64 -4.88 16 26 N -0.59 -27.74 2.68 -649.88 -1.74 -29.49 16 27 C -0.25 -12.60 8.59 84.03 0.72 -11.88 16 28 H 0.08 3.80 6.23 -2.91 -0.02 3.78 16 29 C -0.05 -2.60 4.93 84.86 0.42 -2.18 16 30 N -0.93 -52.74 10.12 21.65 0.22 -52.52 16 31 Si 0.96 43.70 29.58 68.60 2.03 45.73 16 32 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 33 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 34 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 35 H 0.06 1.86 7.33 -2.39 -0.02 1.84 16 36 H 0.04 1.56 7.73 -2.39 -0.02 1.54 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 2.25 5.61 -2.38 -0.01 2.23 16 39 H 0.08 2.21 8.12 -2.38 -0.02 2.19 16 40 H 0.41 8.99 6.09 -92.71 -0.56 8.43 16 41 H 0.06 1.61 7.99 -2.39 -0.02 1.59 16 42 H 0.08 1.82 8.03 -2.39 -0.02 1.80 16 43 H 0.09 1.28 7.74 -2.39 -0.02 1.27 16 44 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.07 3.06 6.97 -2.38 -0.02 3.04 16 47 H 0.04 2.30 7.18 -2.39 -0.02 2.28 16 48 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.02 0.96 7.02 -2.39 -0.02 0.94 16 50 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -66.84 377.82 0.82 -66.02 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.39 Total: 27.32 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 6.03 Total: 24.47 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -5.94 Total: -127.32 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.68 Total: -36.22 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.84 0.82 -66.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897908495.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.091 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds