Wall clock time and date at job start Tue Mar 31 2020 18:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.50196 * 2 1 4 4 C 1.53192 * 109.49753 * 239.93295 * 2 1 3 5 5 N 1.46922 * 108.77746 * 185.38409 * 4 2 1 6 6 C 1.36940 * 120.62906 * 233.58494 * 5 4 2 7 7 H 1.08000 * 120.00137 * 27.68622 * 6 5 4 8 8 C 1.38812 * 119.99979 * 207.68003 * 6 5 4 9 9 N 1.31621 * 119.99877 * 17.37697 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 197.36845 * 8 6 5 11 11 H 1.48495 * 109.47071 * 90.00614 * 10 8 6 12 12 H 1.48505 * 109.47305 * 210.00539 * 10 8 6 13 13 H 1.48498 * 109.47243 * 330.00335 * 10 8 6 14 14 C 1.46922 * 118.74177 * 53.60504 * 5 4 2 15 15 C 1.53192 * 108.77791 * 306.39607 * 14 5 4 16 16 C 1.53038 * 109.52403 * 120.08025 * 2 1 3 17 17 H 1.08999 * 109.45847 * 301.34677 * 16 2 1 18 18 N 1.46498 * 109.46113 * 61.30987 * 16 2 1 19 19 C 1.34777 * 119.99940 * 204.99945 * 18 16 2 20 20 O 1.21615 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.47415 * 119.99935 * 179.97438 * 19 18 16 22 22 C 1.36098 * 126.45149 * 179.68817 * 21 19 18 23 23 O 1.34255 * 106.95153 * 179.84147 * 22 21 19 24 24 C 1.34051 * 108.22377 * 0.42794 * 23 22 21 25 25 C 1.50707 * 125.37471 * 179.76768 * 24 23 22 26 26 C 1.52995 * 109.46791 * 239.95487 * 25 24 23 27 27 C 1.52999 * 109.47249 * 359.95513 * 25 24 23 28 28 C 1.52997 * 109.47239 * 119.95568 * 25 24 23 29 29 N 1.29933 * 109.24570 * 359.72993 * 24 23 22 30 30 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47319 * 300.00533 * 1 2 3 32 32 H 1.09002 * 109.47311 * 59.99832 * 1 2 3 33 33 H 1.09004 * 109.58631 * 305.16833 * 4 2 1 34 34 H 1.09002 * 109.58623 * 65.45004 * 4 2 1 35 35 H 0.97001 * 119.99724 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58242 * 66.18200 * 14 5 4 37 37 H 1.09004 * 109.59095 * 186.60115 * 14 5 4 38 38 H 1.08998 * 109.49760 * 174.58714 * 15 14 5 39 39 H 1.09003 * 109.49603 * 294.65072 * 15 14 5 40 40 H 0.97003 * 120.00029 * 25.00018 * 18 16 2 41 41 H 1.07997 * 126.52118 * 0.02562 * 22 21 19 42 42 H 1.09002 * 109.47206 * 60.00288 * 26 25 24 43 43 H 1.09005 * 109.46722 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47487 * 299.99968 * 26 25 24 45 45 H 1.09003 * 109.46998 * 60.00200 * 27 25 24 46 46 H 1.08996 * 109.47169 * 180.02562 * 27 25 24 47 47 H 1.09003 * 109.46823 * 300.00347 * 27 25 24 48 48 H 1.09007 * 109.46755 * 59.99733 * 28 25 24 49 49 H 1.08996 * 109.47260 * 179.97438 * 28 25 24 50 50 H 1.09003 * 109.47243 * 299.99945 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5045 -0.8282 -1.1702 6 6 4.2930 -0.3780 -2.1953 7 1 3.9456 0.4216 -2.8327 8 6 5.5389 -0.9494 -2.4151 9 7 5.8283 -2.1200 -1.8876 10 14 6.8045 -0.0570 -3.4598 11 1 7.6343 0.8173 -2.5926 12 1 7.6749 -1.0502 -4.1390 13 1 6.1104 0.7713 -4.4783 14 6 4.1059 -1.4256 0.0299 15 6 3.5715 -0.6942 1.2654 16 6 2.0414 -0.7229 1.2481 17 1 1.6588 -0.2245 2.1388 18 7 1.5795 -2.1131 1.2306 19 6 1.4520 -2.7954 2.3859 20 8 1.7200 -2.2569 3.4429 21 6 0.9867 -4.1941 2.3684 22 6 0.8171 -5.0035 3.4493 23 8 0.3792 -6.1858 2.9881 24 6 0.2909 -6.1083 1.6528 25 6 -0.1572 -7.2221 0.7418 26 6 0.9663 -7.5613 -0.2397 27 6 -0.4956 -8.4588 1.5767 28 6 -1.3971 -6.7771 -0.0362 29 7 0.6517 -4.9209 1.2679 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6056 -1.7215 -1.2981 34 1 1.7610 -0.1590 -2.1391 35 1 6.6990 -2.5191 -2.0409 36 1 3.8386 -2.4808 0.0859 37 1 5.1901 -1.3231 -0.0149 38 1 3.9346 -1.1888 2.1663 39 1 3.9165 0.3397 1.2537 40 1 1.3654 -2.5425 0.3876 41 1 0.9972 -4.7430 4.4818 42 1 1.8497 -7.8783 0.3146 43 1 0.6424 -8.3672 -0.8983 44 1 1.2075 -6.6803 -0.8345 45 1 -1.2961 -8.2172 2.2760 46 1 -0.8192 -9.2645 0.9178 47 1 0.3878 -8.7758 2.1310 48 1 -1.1559 -5.8961 -0.6310 49 1 -1.7209 -7.5826 -0.6954 50 1 -2.1976 -6.5355 0.6631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942050550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:07 Heat of formation + Delta-G solvation = -9.944779 kcal Electronic energy + Delta-G solvation = -30470.885911 eV Core-core repulsion = 26499.834033 eV Total energy + Delta-G solvation = -3971.051878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.49171 -39.71669 -37.60778 -37.18077 -34.79505 -34.20397 -32.40612 -31.09306 -30.20791 -29.61624 -27.64458 -27.52856 -25.91083 -25.37959 -23.95432 -23.30335 -21.95946 -21.08293 -20.70523 -19.56823 -18.48004 -17.95863 -16.85696 -16.71776 -16.44098 -15.53471 -15.18998 -14.81032 -14.65797 -14.48204 -14.25616 -14.02149 -13.76983 -13.69076 -13.42419 -13.24655 -12.89209 -12.60750 -12.54327 -12.50675 -12.07882 -11.93736 -11.89032 -11.49745 -11.44499 -11.34027 -11.26947 -11.11084 -11.04993 -10.79946 -10.72944 -10.69145 -10.32035 -10.17789 -10.02213 -9.86786 -9.70352 -9.39616 -9.05149 -8.53975 -8.42897 -6.65359 -5.76603 -3.19456 1.13142 2.05625 2.47086 3.36243 3.39207 3.46129 3.46938 3.54039 3.76515 4.46341 4.50546 4.56782 4.65210 4.87776 4.96849 5.21892 5.27559 5.34309 5.34669 5.37848 5.40263 5.47530 5.53127 5.54812 5.61256 5.63250 5.64336 5.69988 5.80769 5.91196 5.99742 6.02047 6.05780 6.12729 6.13978 6.20201 6.32428 6.39830 6.49124 6.65964 6.69504 6.80296 6.95266 7.01015 7.40702 7.45632 7.70728 7.81486 7.92597 8.46163 8.48121 9.22648 9.86176 10.42589 11.31280 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003466 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.620043 B = 8077.449319 C = 9084.723094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.082 0.918 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.159 3.841 17 H 0.074 0.926 18 N -0.689 5.689 19 C 0.598 3.402 20 O -0.548 6.548 21 C -0.062 4.062 22 C 0.000 4.000 23 O -0.196 6.196 24 C 0.204 3.796 25 C 0.033 3.967 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.140 4.140 29 N -0.450 5.450 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.056 0.944 35 H 0.253 0.747 36 H 0.018 0.982 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.410 0.590 41 H 0.229 0.771 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 -10.177 7.463 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.101 0.899 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.049 3.951 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.092 0.908 18 N -0.339 5.339 19 C 0.383 3.617 20 O -0.427 6.427 21 C -0.182 4.182 22 C -0.074 4.074 23 O -0.082 6.082 24 C -0.006 4.006 25 C 0.032 3.968 26 C -0.200 4.200 27 C -0.204 4.204 28 C -0.198 4.198 29 N -0.179 5.179 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.247 0.753 41 H 0.245 0.755 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.447 -9.668 7.511 18.937 hybrid contribution 0.765 0.056 -0.057 0.769 sum -13.682 -9.612 7.455 18.307 Atomic orbital electron populations 1.21767 0.95754 1.01435 1.01041 1.21944 0.94590 1.00696 0.96695 0.89924 1.20906 0.86109 0.96238 0.94287 1.44058 0.99141 1.71523 1.16586 1.19186 0.98237 1.12309 1.08566 0.91647 1.25026 0.99883 0.95337 0.99283 1.70050 1.21767 1.14583 1.48065 0.86304 0.81713 0.78910 0.79913 1.21485 1.21831 1.20453 1.20722 0.99214 0.93008 0.82191 1.22577 0.94086 1.01983 1.00813 1.20966 0.95224 0.80219 0.98087 0.90784 1.45939 1.65151 1.14016 1.08825 1.16725 0.77541 0.82887 0.84524 1.90783 1.52250 1.68921 1.30782 1.21928 1.09328 0.97620 0.89363 1.25228 0.99227 0.81995 1.00920 1.84366 1.64487 1.35071 1.24249 1.26261 0.99861 0.95270 0.79187 1.19162 0.97188 0.88734 0.91748 1.21933 0.96660 1.03058 0.98331 1.21921 1.02480 0.96117 0.99893 1.21913 0.95103 1.02752 0.99988 1.70744 1.14776 1.02749 1.29651 0.93001 0.93324 0.92708 0.96709 0.92500 0.93696 0.96341 0.89603 0.92709 0.91666 0.75251 0.75520 0.92097 0.90914 0.90621 0.91879 0.90925 0.91776 0.90840 0.90905 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.06 37.15 0.34 -1.66 16 2 C -0.12 -2.02 2.67 -90.50 -0.24 -2.26 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.15 3.08 5.50 -3.71 -0.02 3.06 16 5 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 6 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 7 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 9 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 10 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.17 4.24 5.05 -3.71 -0.02 4.22 16 15 C -0.15 -3.16 5.77 -26.61 -0.15 -3.32 16 16 C 0.16 2.86 2.21 -67.89 -0.15 2.71 16 17 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 18 N -0.69 -12.19 3.59 -54.84 -0.20 -12.38 16 19 C 0.60 10.63 7.78 -12.52 -0.10 10.53 16 20 O -0.55 -10.71 16.55 5.26 0.09 -10.63 16 21 C -0.06 -0.97 6.99 -83.02 -0.58 -1.55 16 22 C 0.00 0.00 11.95 29.96 0.36 0.36 16 23 O -0.20 -2.38 10.11 6.51 0.07 -2.32 16 24 C 0.20 2.57 6.44 -13.08 -0.08 2.48 16 25 C 0.03 0.31 0.99 -155.66 -0.15 0.15 16 26 C -0.14 -1.35 8.45 37.16 0.31 -1.03 16 27 C -0.15 -1.05 8.01 37.16 0.30 -0.75 16 28 C -0.14 -1.15 8.45 37.16 0.31 -0.84 16 29 N -0.45 -6.81 11.05 -7.65 -0.08 -6.90 16 30 H 0.05 0.73 7.54 -51.93 -0.39 0.34 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.31 6.64 -51.93 -0.34 -0.04 16 34 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 37 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.41 7.39 6.46 -40.82 -0.26 7.13 16 41 H 0.23 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -31.69 398.39 -7.57 -39.26 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.41 Total: 5.93 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.11 Total: 5.06 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.18 Total: -60.03 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.15 Total: -12.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.69 -7.57 -39.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942050550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.315 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds