Wall clock time and date at job start Tue Mar 31 2020 18:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.50196 * 2 1 4 4 C 1.53192 * 109.49753 * 239.93295 * 2 1 3 5 5 N 1.46922 * 108.77746 * 185.38409 * 4 2 1 6 6 C 1.36940 * 120.62906 * 233.58494 * 5 4 2 7 7 H 1.08000 * 120.00137 * 27.68622 * 6 5 4 8 8 C 1.38812 * 119.99979 * 207.68003 * 6 5 4 9 9 N 1.31621 * 119.99877 * 17.37697 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 197.36845 * 8 6 5 11 11 H 1.48495 * 109.47071 * 90.00614 * 10 8 6 12 12 H 1.48505 * 109.47305 * 210.00539 * 10 8 6 13 13 H 1.48498 * 109.47243 * 330.00335 * 10 8 6 14 14 C 1.46922 * 118.74177 * 53.60504 * 5 4 2 15 15 C 1.53192 * 108.77791 * 306.39607 * 14 5 4 16 16 C 1.53038 * 109.52403 * 120.08025 * 2 1 3 17 17 H 1.08999 * 109.45847 * 301.34677 * 16 2 1 18 18 N 1.46498 * 109.46113 * 61.30987 * 16 2 1 19 19 C 1.34777 * 119.99940 * 204.99945 * 18 16 2 20 20 O 1.21615 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.47415 * 119.99935 * 179.97438 * 19 18 16 22 22 C 1.36098 * 126.45149 * 179.68817 * 21 19 18 23 23 O 1.34255 * 106.95153 * 179.84147 * 22 21 19 24 24 C 1.34051 * 108.22377 * 0.42794 * 23 22 21 25 25 C 1.50707 * 125.37471 * 179.76768 * 24 23 22 26 26 C 1.52995 * 109.46791 * 239.95487 * 25 24 23 27 27 C 1.52999 * 109.47249 * 359.95513 * 25 24 23 28 28 C 1.52997 * 109.47239 * 119.95568 * 25 24 23 29 29 N 1.29933 * 109.24570 * 359.72993 * 24 23 22 30 30 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47319 * 300.00533 * 1 2 3 32 32 H 1.09002 * 109.47311 * 59.99832 * 1 2 3 33 33 H 1.09004 * 109.58631 * 305.16833 * 4 2 1 34 34 H 1.09002 * 109.58623 * 65.45004 * 4 2 1 35 35 H 0.97001 * 119.99724 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58242 * 66.18200 * 14 5 4 37 37 H 1.09004 * 109.59095 * 186.60115 * 14 5 4 38 38 H 1.08998 * 109.49760 * 174.58714 * 15 14 5 39 39 H 1.09003 * 109.49603 * 294.65072 * 15 14 5 40 40 H 0.97003 * 120.00029 * 25.00018 * 18 16 2 41 41 H 1.07997 * 126.52118 * 0.02562 * 22 21 19 42 42 H 1.09002 * 109.47206 * 60.00288 * 26 25 24 43 43 H 1.09005 * 109.46722 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47487 * 299.99968 * 26 25 24 45 45 H 1.09003 * 109.46998 * 60.00200 * 27 25 24 46 46 H 1.08996 * 109.47169 * 180.02562 * 27 25 24 47 47 H 1.09003 * 109.46823 * 300.00347 * 27 25 24 48 48 H 1.09007 * 109.46755 * 59.99733 * 28 25 24 49 49 H 1.08996 * 109.47260 * 179.97438 * 28 25 24 50 50 H 1.09003 * 109.47243 * 299.99945 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5045 -0.8282 -1.1702 6 6 4.2930 -0.3780 -2.1953 7 1 3.9456 0.4216 -2.8327 8 6 5.5389 -0.9494 -2.4151 9 7 5.8283 -2.1200 -1.8876 10 14 6.8045 -0.0570 -3.4598 11 1 7.6343 0.8173 -2.5926 12 1 7.6749 -1.0502 -4.1390 13 1 6.1104 0.7713 -4.4783 14 6 4.1059 -1.4256 0.0299 15 6 3.5715 -0.6942 1.2654 16 6 2.0414 -0.7229 1.2481 17 1 1.6588 -0.2245 2.1388 18 7 1.5795 -2.1131 1.2306 19 6 1.4520 -2.7954 2.3859 20 8 1.7200 -2.2569 3.4429 21 6 0.9867 -4.1941 2.3684 22 6 0.8171 -5.0035 3.4493 23 8 0.3792 -6.1858 2.9881 24 6 0.2909 -6.1083 1.6528 25 6 -0.1572 -7.2221 0.7418 26 6 0.9663 -7.5613 -0.2397 27 6 -0.4956 -8.4588 1.5767 28 6 -1.3971 -6.7771 -0.0362 29 7 0.6517 -4.9209 1.2679 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6056 -1.7215 -1.2981 34 1 1.7610 -0.1590 -2.1391 35 1 6.6990 -2.5191 -2.0409 36 1 3.8386 -2.4808 0.0859 37 1 5.1901 -1.3231 -0.0149 38 1 3.9346 -1.1888 2.1663 39 1 3.9165 0.3397 1.2537 40 1 1.3654 -2.5425 0.3876 41 1 0.9972 -4.7430 4.4818 42 1 1.8497 -7.8783 0.3146 43 1 0.6424 -8.3672 -0.8983 44 1 1.2075 -6.6803 -0.8345 45 1 -1.2961 -8.2172 2.2760 46 1 -0.8192 -9.2645 0.9178 47 1 0.3878 -8.7758 2.1310 48 1 -1.1559 -5.8961 -0.6310 49 1 -1.7209 -7.5826 -0.6954 50 1 -2.1976 -6.5355 0.6631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942050550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:06 Heat of formation + Delta-G solvation = -30.843073 kcal Electronic energy + Delta-G solvation = -30471.792129 eV Core-core repulsion = 26499.834033 eV Total energy + Delta-G solvation = -3971.958096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.52480 -41.18982 -39.15894 -37.94639 -36.04041 -35.85692 -33.93591 -32.91010 -31.84215 -30.82166 -28.26983 -28.23658 -27.43046 -27.21487 -25.28172 -24.27239 -23.63524 -22.78028 -21.92362 -20.59826 -20.07651 -19.09852 -18.64740 -17.88702 -17.56322 -16.90424 -16.70726 -16.25421 -16.09264 -15.79816 -15.44301 -15.39218 -15.00098 -14.93518 -14.75132 -14.59774 -14.50792 -14.18040 -13.56211 -13.27329 -13.17832 -13.09527 -12.99376 -12.72608 -12.62620 -12.60209 -12.56181 -12.41984 -12.40156 -12.18435 -12.05236 -11.98450 -11.95146 -11.74836 -11.70837 -11.51345 -11.29179 -11.12052 -10.54597 -10.20213 -9.93495 -8.68935 -7.87225 -5.33023 0.05159 0.94392 1.46205 1.48193 1.51012 1.56520 2.07718 2.24782 2.50758 2.75754 3.27461 3.57637 3.66788 3.68151 3.78401 3.87776 3.94404 4.03936 4.06487 4.09938 4.37519 4.43707 4.56367 4.57596 4.63827 4.72406 4.74061 4.74784 4.76647 4.82852 4.86951 4.94527 4.94726 4.95910 4.99007 5.06154 5.07631 5.14406 5.26749 5.27663 5.32838 5.38522 5.39976 5.46311 5.53160 5.63639 5.71044 6.31448 6.37428 6.59120 7.07639 7.13285 7.84480 8.36767 9.18753 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003466 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.620043 B = 8077.449319 C = 9084.723094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.261 4.261 7 H 0.071 0.929 8 C -0.050 4.050 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.288 1.288 12 H -0.297 1.297 13 H -0.266 1.266 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.164 3.836 17 H 0.085 0.915 18 N -0.689 5.689 19 C 0.598 3.402 20 O -0.570 6.570 21 C -0.100 4.100 22 C 0.024 3.976 23 O -0.189 6.189 24 C 0.207 3.793 25 C 0.031 3.969 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.136 4.136 29 N -0.480 5.480 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.012 0.988 34 H 0.061 0.939 35 H 0.248 0.752 36 H -0.008 1.008 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.408 0.592 41 H 0.258 0.742 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.099 0.901 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.792 -10.496 7.704 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.103 0.897 4 C 0.025 3.975 5 N -0.329 5.329 6 C -0.392 4.392 7 H 0.089 0.911 8 C -0.246 4.246 9 N -0.581 5.581 10 Si 0.795 3.205 11 H -0.215 1.215 12 H -0.224 1.224 13 H -0.190 1.190 14 C 0.064 3.936 15 C -0.183 4.183 16 C 0.060 3.940 17 H 0.103 0.897 18 N -0.339 5.339 19 C 0.384 3.616 20 O -0.451 6.451 21 C -0.220 4.220 22 C -0.050 4.050 23 O -0.074 6.074 24 C -0.003 4.003 25 C 0.030 3.970 26 C -0.198 4.198 27 C -0.199 4.199 28 C -0.194 4.194 29 N -0.209 5.209 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.010 0.990 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.244 0.756 41 H 0.274 0.726 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.115 0.885 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.117 0.883 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.455 -9.967 7.744 20.739 hybrid contribution 1.347 0.085 -0.133 1.356 sum -15.108 -9.882 7.611 19.592 Atomic orbital electron populations 1.21686 0.92874 1.01832 1.02648 1.21801 0.96810 0.99890 0.94106 0.89666 1.21052 0.83588 0.96601 0.96293 1.44271 1.00961 1.71451 1.16220 1.19551 0.98785 1.12104 1.08716 0.91132 1.25788 1.01767 0.95988 1.01010 1.70215 1.21797 1.16160 1.49933 0.85280 0.79133 0.77600 0.78520 1.21463 1.22373 1.19009 1.20370 0.97110 0.92102 0.84032 1.22404 0.96202 1.01332 0.98365 1.20897 0.93170 0.80848 0.99079 0.89737 1.45910 1.65192 1.13905 1.08874 1.16992 0.76853 0.83684 0.84022 1.90753 1.53376 1.69725 1.31267 1.21790 1.12151 0.97258 0.90753 1.25763 0.96526 0.81288 1.01436 1.84410 1.64185 1.34675 1.24169 1.27028 0.98437 0.95301 0.79566 1.19441 0.97352 0.88714 0.91539 1.21931 0.96724 1.02719 0.98429 1.21918 1.02476 0.95446 1.00045 1.21908 0.94572 1.02851 1.00065 1.70703 1.16102 1.03946 1.30105 0.93222 0.91737 0.91086 0.96989 0.92067 0.94315 0.99026 0.93301 0.93260 0.91292 0.75565 0.72620 0.92847 0.88077 0.93401 0.91469 0.88480 0.92146 0.92933 0.88263 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.06 71.98 0.65 -2.77 16 2 C -0.11 -3.48 2.67 -10.72 -0.03 -3.50 16 3 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 4 C 0.15 6.08 5.50 86.36 0.47 6.56 16 5 N -0.61 -30.52 2.99 -699.10 -2.09 -32.61 16 6 C -0.26 -14.40 9.59 84.03 0.81 -13.60 16 7 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 8 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 9 N -0.93 -56.51 11.19 21.65 0.24 -56.27 16 10 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 C 0.19 9.61 5.05 86.36 0.44 10.04 16 15 C -0.14 -5.96 5.77 30.67 0.18 -5.78 16 16 C 0.16 5.85 2.21 45.02 0.10 5.95 16 17 H 0.08 2.91 7.58 -2.39 -0.02 2.89 16 18 N -0.69 -24.65 3.59 -445.68 -1.60 -26.25 16 19 C 0.60 21.39 7.78 86.66 0.67 22.06 16 20 O -0.57 -22.19 16.55 -4.08 -0.07 -22.26 16 21 C -0.10 -3.15 6.99 40.41 0.28 -2.87 16 22 C 0.02 0.58 11.95 67.32 0.80 1.39 16 23 O -0.19 -4.33 10.11 0.39 0.00 -4.33 16 24 C 0.21 5.09 6.44 88.39 0.57 5.65 16 25 C 0.03 0.53 0.99 -52.93 -0.05 0.48 16 26 C -0.14 -2.57 8.45 71.98 0.61 -1.97 16 27 C -0.14 -1.66 8.01 71.98 0.58 -1.08 16 28 C -0.14 -2.04 8.45 71.98 0.61 -1.43 16 29 N -0.48 -14.72 11.05 -293.03 -3.24 -17.96 16 30 H 0.05 1.31 7.54 -2.39 -0.02 1.29 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.01 0.51 6.64 -2.39 -0.02 0.49 16 34 H 0.06 2.40 7.94 -2.39 -0.02 2.38 16 35 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 36 H -0.01 -0.46 7.74 -2.39 -0.02 -0.48 16 37 H 0.05 2.82 6.04 -2.38 -0.01 2.81 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.41 15.07 6.46 -92.71 -0.60 14.47 16 41 H 0.26 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -70.60 398.39 2.71 -67.90 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.33 Total: 27.63 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 7.10 Total: 16.74 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -6.69 Total: -133.09 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.59 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.60 2.71 -67.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942050550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.053 kcal (2) G-P(sol) polarization free energy of solvation -70.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds