Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.49437 * 2 1 4 4 C 1.53191 * 109.49597 * 120.09258 * 2 1 3 5 5 N 1.46934 * 108.77456 * 174.58516 * 4 2 1 6 6 C 1.36938 * 120.62955 * 126.37112 * 5 4 2 7 7 H 1.07997 * 119.99787 * 331.83365 * 6 5 4 8 8 C 1.38810 * 119.99588 * 151.83320 * 6 5 4 9 9 N 1.31615 * 120.00253 * 343.08423 * 8 6 5 10 10 Si 1.86804 * 119.99835 * 163.08515 * 8 6 5 11 11 H 1.48497 * 109.47198 * 89.99738 * 10 8 6 12 12 H 1.48500 * 109.47212 * 210.00037 * 10 8 6 13 13 H 1.48505 * 109.46788 * 329.99911 * 10 8 6 14 14 C 1.46926 * 118.73575 * 306.39591 * 5 4 2 15 15 C 1.53161 * 108.76938 * 53.61038 * 14 5 4 16 16 C 1.53035 * 109.49819 * 239.93380 * 2 1 3 17 17 H 1.09001 * 109.46079 * 58.67298 * 16 2 1 18 18 N 1.46500 * 109.45859 * 298.70708 * 16 2 1 19 19 C 1.34780 * 120.00245 * 154.97384 * 18 16 2 20 20 O 1.21619 * 119.99623 * 359.97438 * 19 18 16 21 21 C 1.47414 * 120.00054 * 179.97438 * 19 18 16 22 22 C 1.36094 * 126.44814 * 179.97438 * 21 19 18 23 23 O 1.34256 * 106.95030 * 180.02562 * 22 21 19 24 24 C 1.34045 * 108.22443 * 0.02562 * 23 22 21 25 25 C 1.50705 * 125.37774 * 179.97438 * 24 23 22 26 26 C 1.52996 * 109.47324 * 240.02229 * 25 24 23 27 27 C 1.53003 * 109.46740 * 0.02562 * 25 24 23 28 28 C 1.52998 * 109.47129 * 120.01696 * 25 24 23 29 29 N 1.29930 * 109.24601 * 0.22458 * 24 23 22 30 30 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47243 * 300.06966 * 1 2 3 32 32 H 1.08997 * 109.47236 * 60.06565 * 1 2 3 33 33 H 1.08992 * 109.58896 * 294.37382 * 4 2 1 34 34 H 1.09008 * 109.58629 * 54.80458 * 4 2 1 35 35 H 0.97003 * 119.99683 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58557 * 173.39461 * 14 5 4 37 37 H 1.08999 * 109.58660 * 293.82022 * 14 5 4 38 38 H 1.09004 * 109.47811 * 185.40493 * 15 14 5 39 39 H 1.09003 * 109.50744 * 65.31557 * 15 14 5 40 40 H 0.96995 * 120.00147 * 334.96793 * 18 16 2 41 41 H 1.08007 * 126.52488 * 0.03725 * 22 21 19 42 42 H 1.09006 * 109.46867 * 59.99885 * 26 25 24 43 43 H 1.08997 * 109.47367 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46988 * 300.00378 * 26 25 24 45 45 H 1.09001 * 109.47606 * 59.99892 * 27 25 24 46 46 H 1.09006 * 109.46983 * 180.02562 * 27 25 24 47 47 H 1.09006 * 109.47296 * 300.00020 * 27 25 24 48 48 H 1.08997 * 109.46747 * 60.00530 * 28 25 24 49 49 H 1.09006 * 109.46805 * 180.02562 * 28 25 24 50 50 H 1.08999 * 109.48008 * 300.00202 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 3.5047 -0.8294 1.1694 6 6 4.2936 -0.3790 2.1940 7 1 3.9500 0.4263 2.8263 8 6 5.5350 -0.9576 2.4199 9 7 5.8211 -2.1288 1.8919 10 14 6.7995 -0.0740 3.4734 11 1 6.6301 -0.4769 4.8925 12 1 8.1651 -0.4359 3.0156 13 1 6.6086 1.3935 3.3493 14 6 4.1053 -1.4267 -0.0311 15 6 3.5709 -0.6946 -1.2658 16 6 2.0408 -0.7227 -1.2485 17 1 1.6583 -0.2238 -2.1389 18 7 1.5783 -2.1127 -1.2313 19 6 1.4496 -2.7945 -2.3868 20 8 1.7171 -2.2556 -3.4438 21 6 0.9847 -4.1933 -2.3694 22 6 0.8079 -5.0001 -3.4511 23 8 0.3762 -6.1846 -2.9896 24 6 0.2890 -6.1076 -1.6542 25 6 -0.1579 -7.2220 -0.7433 26 6 -1.3969 -6.7774 0.0365 27 6 -0.4972 -8.4582 -1.5785 28 6 0.9668 -7.5617 0.2367 29 7 0.6456 -4.9189 -1.2695 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1584 2.1388 34 1 1.6052 -1.7220 1.2976 35 1 6.6885 -2.5332 2.0502 36 1 5.1896 -1.3246 0.0134 37 1 3.8375 -2.4818 -0.0874 38 1 3.9336 -1.1892 -2.1669 39 1 3.9159 0.3393 -1.2537 40 1 1.3647 -2.5424 -0.3884 41 1 0.9820 -4.7374 -4.4842 42 1 -2.1982 -6.5355 -0.6618 43 1 -1.7204 -7.5836 0.6949 44 1 -1.1551 -5.8967 0.6314 45 1 0.3856 -8.7749 -2.1340 46 1 -0.8209 -9.2641 -0.9197 47 1 -1.2984 -8.2163 -2.2768 48 1 1.2086 -6.6810 0.8317 49 1 0.6437 -8.3680 0.8952 50 1 1.8496 -7.8785 -0.3187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942050551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = -9.912017 kcal Electronic energy + Delta-G solvation = -30471.132031 eV Core-core repulsion = 26500.081574 eV Total energy + Delta-G solvation = -3971.050457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.49231 -39.71530 -37.60604 -37.17982 -34.79482 -34.20022 -32.40310 -31.09562 -30.20622 -29.61507 -27.64374 -27.52833 -25.90963 -25.37661 -23.95348 -23.30277 -21.95663 -21.08044 -20.70407 -19.56764 -18.47867 -17.95798 -16.85699 -16.71624 -16.43997 -15.53343 -15.18754 -14.80345 -14.65778 -14.48116 -14.25593 -14.02171 -13.76804 -13.69281 -13.42237 -13.24544 -12.89125 -12.60656 -12.54314 -12.50610 -12.07702 -11.93702 -11.88934 -11.49669 -11.44234 -11.33534 -11.26882 -11.11075 -11.05040 -10.80058 -10.72842 -10.66249 -10.34578 -10.18530 -10.02438 -9.86685 -9.70082 -9.39527 -9.05109 -8.53823 -8.42952 -6.63995 -5.76632 -3.19672 1.13206 2.05684 2.47104 3.36286 3.38459 3.45645 3.47917 3.54098 3.76591 4.46387 4.50625 4.56841 4.65256 4.87801 4.96940 5.22125 5.27536 5.34430 5.35265 5.37907 5.40211 5.47649 5.53349 5.54852 5.61305 5.63310 5.64520 5.70047 5.80822 5.91311 5.99804 6.02219 6.05894 6.12876 6.14037 6.20388 6.32692 6.40049 6.49293 6.66065 6.69800 6.80413 6.95513 7.01176 7.40715 7.45699 7.70768 7.81386 7.92688 8.46594 8.48198 9.22857 9.86349 10.43058 11.31378 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003469 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.562595 B = 8069.516126 C = 9083.906769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.082 0.918 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.175 3.825 15 C -0.154 4.154 16 C 0.159 3.841 17 H 0.074 0.926 18 N -0.689 5.689 19 C 0.598 3.402 20 O -0.549 6.549 21 C -0.062 4.062 22 C 0.000 4.000 23 O -0.196 6.196 24 C 0.204 3.796 25 C 0.033 3.967 26 C -0.140 4.140 27 C -0.147 4.147 28 C -0.142 4.142 29 N -0.450 5.450 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.015 0.985 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.019 0.981 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.410 0.590 41 H 0.229 0.771 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 -10.151 -7.490 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.101 0.899 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.730 3.270 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.049 3.951 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.092 0.908 18 N -0.339 5.339 19 C 0.383 3.617 20 O -0.427 6.427 21 C -0.182 4.182 22 C -0.074 4.074 23 O -0.082 6.082 24 C -0.006 4.006 25 C 0.032 3.968 26 C -0.197 4.197 27 C -0.204 4.204 28 C -0.200 4.200 29 N -0.179 5.179 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.247 0.753 41 H 0.245 0.755 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.396 -9.636 -7.552 18.898 hybrid contribution 0.759 0.037 0.080 0.764 sum -13.637 -9.599 -7.472 18.274 Atomic orbital electron populations 1.21770 0.95762 1.01433 1.01036 1.21947 0.94588 1.00692 0.96699 0.89927 1.20914 0.86133 0.96220 0.94285 1.44054 0.99130 1.71558 1.16570 1.19152 0.98543 1.11907 1.08724 0.91737 1.25034 0.99918 0.95331 0.99202 1.70042 1.22095 1.14500 1.47827 0.86332 0.81163 0.79451 0.80020 1.21432 1.21613 1.20495 1.20708 0.99173 0.93013 0.82204 1.22573 0.94092 1.01980 1.00812 1.20967 0.95220 0.80224 0.98087 0.90782 1.45939 1.65133 1.14040 1.08815 1.16727 0.77547 0.82881 0.84525 1.90784 1.52264 1.68899 1.30794 1.21925 1.09271 0.97675 0.89355 1.25229 0.99245 0.82004 1.00903 1.84365 1.64667 1.34911 1.24230 1.26258 0.99886 0.95219 0.79210 1.19162 0.97194 0.88727 0.91749 1.21911 0.95105 1.02751 0.99981 1.21923 1.02473 0.96126 0.99890 1.21933 0.96649 1.03055 0.98347 1.70742 1.14772 1.02733 1.29680 0.93002 0.92710 0.93330 0.92498 0.96694 0.93697 0.89660 0.96335 0.92715 0.91662 0.75252 0.75519 0.92304 0.90905 0.90831 0.91770 0.90926 0.91886 0.90625 0.90915 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.12 -2.03 2.67 -90.50 -0.24 -2.27 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.15 3.08 5.50 -3.71 -0.02 3.06 16 5 N -0.59 -14.61 2.99 -172.33 -0.52 -15.13 16 6 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 7 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 8 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 9 N -0.90 -26.25 11.20 55.49 0.62 -25.63 16 10 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.17 4.25 5.05 -3.73 -0.02 4.23 16 15 C -0.15 -3.16 5.77 -26.63 -0.15 -3.31 16 16 C 0.16 2.87 2.21 -67.89 -0.15 2.72 16 17 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 18 N -0.69 -12.19 3.59 -54.84 -0.20 -12.39 16 19 C 0.60 10.63 7.78 -12.52 -0.10 10.53 16 20 O -0.55 -10.72 16.55 5.26 0.09 -10.63 16 21 C -0.06 -0.97 6.99 -83.03 -0.58 -1.55 16 22 C 0.00 0.00 11.95 29.96 0.36 0.36 16 23 O -0.20 -2.38 10.11 6.53 0.07 -2.32 16 24 C 0.20 2.57 6.44 -13.08 -0.08 2.48 16 25 C 0.03 0.31 0.99 -155.66 -0.15 0.15 16 26 C -0.14 -1.15 8.45 37.16 0.31 -0.84 16 27 C -0.15 -1.05 8.01 37.16 0.30 -0.75 16 28 C -0.14 -1.35 8.46 37.16 0.31 -1.04 16 29 N -0.45 -6.81 11.05 -7.66 -0.08 -6.90 16 30 H 0.05 0.73 7.53 -51.93 -0.39 0.34 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.02 0.31 6.64 -51.92 -0.34 -0.03 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 37 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.41 7.40 6.46 -40.82 -0.26 7.14 16 41 H 0.23 2.18 8.06 -52.48 -0.42 1.76 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -31.70 398.40 -7.57 -39.28 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.41 Total: 5.96 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.11 Total: 5.07 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.18 Total: -60.05 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.15 Total: -12.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.70 -7.57 -39.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942050551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.364 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds