Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.49437 * 2 1 4 4 C 1.53191 * 109.49597 * 120.09258 * 2 1 3 5 5 N 1.46934 * 108.77456 * 174.58516 * 4 2 1 6 6 C 1.36938 * 120.62955 * 126.37112 * 5 4 2 7 7 H 1.07997 * 119.99787 * 331.83365 * 6 5 4 8 8 C 1.38810 * 119.99588 * 151.83320 * 6 5 4 9 9 N 1.31615 * 120.00253 * 343.08423 * 8 6 5 10 10 Si 1.86804 * 119.99835 * 163.08515 * 8 6 5 11 11 H 1.48497 * 109.47198 * 89.99738 * 10 8 6 12 12 H 1.48500 * 109.47212 * 210.00037 * 10 8 6 13 13 H 1.48505 * 109.46788 * 329.99911 * 10 8 6 14 14 C 1.46926 * 118.73575 * 306.39591 * 5 4 2 15 15 C 1.53161 * 108.76938 * 53.61038 * 14 5 4 16 16 C 1.53035 * 109.49819 * 239.93380 * 2 1 3 17 17 H 1.09001 * 109.46079 * 58.67298 * 16 2 1 18 18 N 1.46500 * 109.45859 * 298.70708 * 16 2 1 19 19 C 1.34780 * 120.00245 * 154.97384 * 18 16 2 20 20 O 1.21619 * 119.99623 * 359.97438 * 19 18 16 21 21 C 1.47414 * 120.00054 * 179.97438 * 19 18 16 22 22 C 1.36094 * 126.44814 * 179.97438 * 21 19 18 23 23 O 1.34256 * 106.95030 * 180.02562 * 22 21 19 24 24 C 1.34045 * 108.22443 * 0.02562 * 23 22 21 25 25 C 1.50705 * 125.37774 * 179.97438 * 24 23 22 26 26 C 1.52996 * 109.47324 * 240.02229 * 25 24 23 27 27 C 1.53003 * 109.46740 * 0.02562 * 25 24 23 28 28 C 1.52998 * 109.47129 * 120.01696 * 25 24 23 29 29 N 1.29930 * 109.24601 * 0.22458 * 24 23 22 30 30 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47243 * 300.06966 * 1 2 3 32 32 H 1.08997 * 109.47236 * 60.06565 * 1 2 3 33 33 H 1.08992 * 109.58896 * 294.37382 * 4 2 1 34 34 H 1.09008 * 109.58629 * 54.80458 * 4 2 1 35 35 H 0.97003 * 119.99683 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58557 * 173.39461 * 14 5 4 37 37 H 1.08999 * 109.58660 * 293.82022 * 14 5 4 38 38 H 1.09004 * 109.47811 * 185.40493 * 15 14 5 39 39 H 1.09003 * 109.50744 * 65.31557 * 15 14 5 40 40 H 0.96995 * 120.00147 * 334.96793 * 18 16 2 41 41 H 1.08007 * 126.52488 * 0.03725 * 22 21 19 42 42 H 1.09006 * 109.46867 * 59.99885 * 26 25 24 43 43 H 1.08997 * 109.47367 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46988 * 300.00378 * 26 25 24 45 45 H 1.09001 * 109.47606 * 59.99892 * 27 25 24 46 46 H 1.09006 * 109.46983 * 180.02562 * 27 25 24 47 47 H 1.09006 * 109.47296 * 300.00020 * 27 25 24 48 48 H 1.08997 * 109.46747 * 60.00530 * 28 25 24 49 49 H 1.09006 * 109.46805 * 180.02562 * 28 25 24 50 50 H 1.08999 * 109.48008 * 300.00202 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 3.5047 -0.8294 1.1694 6 6 4.2936 -0.3790 2.1940 7 1 3.9500 0.4263 2.8263 8 6 5.5350 -0.9576 2.4199 9 7 5.8211 -2.1288 1.8919 10 14 6.7995 -0.0740 3.4734 11 1 6.6301 -0.4769 4.8925 12 1 8.1651 -0.4359 3.0156 13 1 6.6086 1.3935 3.3493 14 6 4.1053 -1.4267 -0.0311 15 6 3.5709 -0.6946 -1.2658 16 6 2.0408 -0.7227 -1.2485 17 1 1.6583 -0.2238 -2.1389 18 7 1.5783 -2.1127 -1.2313 19 6 1.4496 -2.7945 -2.3868 20 8 1.7171 -2.2556 -3.4438 21 6 0.9847 -4.1933 -2.3694 22 6 0.8079 -5.0001 -3.4511 23 8 0.3762 -6.1846 -2.9896 24 6 0.2890 -6.1076 -1.6542 25 6 -0.1579 -7.2220 -0.7433 26 6 -1.3969 -6.7774 0.0365 27 6 -0.4972 -8.4582 -1.5785 28 6 0.9668 -7.5617 0.2367 29 7 0.6456 -4.9189 -1.2695 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1584 2.1388 34 1 1.6052 -1.7220 1.2976 35 1 6.6885 -2.5332 2.0502 36 1 5.1896 -1.3246 0.0134 37 1 3.8375 -2.4818 -0.0874 38 1 3.9336 -1.1892 -2.1669 39 1 3.9159 0.3393 -1.2537 40 1 1.3647 -2.5424 -0.3884 41 1 0.9820 -4.7374 -4.4842 42 1 -2.1982 -6.5355 -0.6618 43 1 -1.7204 -7.5836 0.6949 44 1 -1.1551 -5.8967 0.6314 45 1 0.3856 -8.7749 -2.1340 46 1 -0.8209 -9.2641 -0.9197 47 1 -1.2984 -8.2163 -2.2768 48 1 1.2086 -6.6810 0.8317 49 1 0.6437 -8.3680 0.8952 50 1 1.8496 -7.8785 -0.3187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942050551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = -30.822294 kcal Electronic energy + Delta-G solvation = -30472.038769 eV Core-core repulsion = 26500.081574 eV Total energy + Delta-G solvation = -3971.957194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.52577 -41.18884 -39.15735 -37.94621 -36.03743 -35.85665 -33.93392 -32.91292 -31.84007 -30.82161 -28.26937 -28.23752 -27.42948 -27.21274 -25.28105 -24.27221 -23.63323 -22.77764 -21.92335 -20.59822 -20.07603 -19.09840 -18.64563 -17.88753 -17.56256 -16.89895 -16.70291 -16.25466 -16.09299 -15.79936 -15.44388 -15.39159 -15.00074 -14.93388 -14.75054 -14.59753 -14.50768 -14.18017 -13.56207 -13.27410 -13.17695 -13.09466 -12.96824 -12.74075 -12.62640 -12.60255 -12.54401 -12.41966 -12.38848 -12.22033 -12.05245 -11.99019 -11.95679 -11.74796 -11.70870 -11.50923 -11.29179 -11.11960 -10.54248 -10.20154 -9.93440 -8.67638 -7.87248 -5.33281 0.05198 0.94410 1.45849 1.47935 1.50982 1.57351 2.07811 2.24771 2.50882 2.75793 3.28010 3.57721 3.66913 3.68165 3.78499 3.87766 3.94417 4.04023 4.06477 4.09993 4.37657 4.43705 4.56392 4.57666 4.63952 4.72445 4.74008 4.74836 4.76870 4.82808 4.87009 4.94525 4.94739 4.95894 4.99170 5.06160 5.07643 5.14398 5.26775 5.27654 5.32831 5.38506 5.40032 5.46315 5.53166 5.63753 5.71035 6.31480 6.37825 6.59147 7.07663 7.13573 7.84643 8.37201 9.18861 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003469 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.562595 B = 8069.516126 C = 9083.906769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.070 0.930 8 C -0.050 4.050 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.269 1.269 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.164 3.836 17 H 0.085 0.915 18 N -0.689 5.689 19 C 0.598 3.402 20 O -0.570 6.570 21 C -0.100 4.100 22 C 0.024 3.976 23 O -0.189 6.189 24 C 0.207 3.793 25 C 0.031 3.969 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.140 4.140 29 N -0.480 5.480 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.012 0.988 35 H 0.248 0.752 36 H 0.048 0.952 37 H -0.008 1.008 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.407 0.593 41 H 0.258 0.742 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.047 0.953 49 H 0.101 0.899 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 -10.476 -7.748 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.103 0.897 4 C 0.025 3.975 5 N -0.329 5.329 6 C -0.392 4.392 7 H 0.088 0.912 8 C -0.245 4.245 9 N -0.581 5.581 10 Si 0.794 3.206 11 H -0.210 1.210 12 H -0.222 1.222 13 H -0.194 1.194 14 C 0.064 3.936 15 C -0.183 4.183 16 C 0.060 3.940 17 H 0.103 0.897 18 N -0.339 5.339 19 C 0.384 3.616 20 O -0.451 6.451 21 C -0.220 4.220 22 C -0.050 4.050 23 O -0.074 6.074 24 C -0.003 4.003 25 C 0.030 3.970 26 C -0.194 4.194 27 C -0.199 4.199 28 C -0.198 4.198 29 N -0.209 5.209 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.010 0.990 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.244 0.756 41 H 0.274 0.726 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.085 0.915 48 H 0.066 0.934 49 H 0.119 0.881 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.377 -9.941 -7.803 20.686 hybrid contribution 1.331 0.067 0.164 1.342 sum -15.046 -9.874 -7.639 19.551 Atomic orbital electron populations 1.21688 0.92884 1.01828 1.02641 1.21802 0.96807 0.99882 0.94117 0.89678 1.21059 0.83619 0.96576 0.96286 1.44268 1.00946 1.71490 1.16214 1.19525 0.99101 1.11746 1.08876 0.91202 1.25799 1.01810 0.95970 1.00934 1.70208 1.22135 1.16058 1.49692 0.85303 0.78244 0.78705 0.78344 1.21015 1.22225 1.19399 1.20357 0.97073 0.92103 0.84039 1.22400 0.96194 1.01337 0.98366 1.20898 0.93178 0.80851 0.99070 0.89733 1.45911 1.65177 1.13931 1.08863 1.16995 0.76859 0.83677 0.84022 1.90754 1.53389 1.69702 1.31276 1.21787 1.12098 0.97318 0.90748 1.25765 0.96527 0.81300 1.01422 1.84409 1.64365 1.34517 1.24149 1.27025 0.98465 0.95252 0.79590 1.19441 0.97357 0.88706 0.91542 1.21906 0.94578 1.02851 1.00057 1.21920 1.02469 0.95456 1.00041 1.21931 0.96715 1.02716 0.98444 1.70701 1.16092 1.03932 1.30135 0.93225 0.91090 0.91744 0.92080 0.96983 0.94308 0.93344 0.99031 0.93257 0.91272 0.75571 0.72611 0.91916 0.88261 0.92929 0.92137 0.88480 0.91477 0.93410 0.88079 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.05 71.98 0.65 -2.78 16 2 C -0.11 -3.48 2.67 -10.72 -0.03 -3.51 16 3 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 4 C 0.15 6.09 5.50 86.36 0.48 6.56 16 5 N -0.61 -30.56 2.99 -699.14 -2.09 -32.65 16 6 C -0.26 -14.46 9.58 84.03 0.81 -13.66 16 7 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 8 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 9 N -0.93 -56.49 11.20 21.65 0.24 -56.25 16 10 Si 0.97 45.32 29.59 68.60 2.03 47.35 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 14 C 0.19 9.63 5.05 86.35 0.44 10.06 16 15 C -0.14 -5.95 5.77 30.66 0.18 -5.77 16 16 C 0.16 5.85 2.21 45.02 0.10 5.95 16 17 H 0.08 2.91 7.58 -2.39 -0.02 2.89 16 18 N -0.69 -24.66 3.59 -445.67 -1.60 -26.27 16 19 C 0.60 21.39 7.78 86.66 0.67 22.07 16 20 O -0.57 -22.19 16.55 -4.09 -0.07 -22.26 16 21 C -0.10 -3.15 6.99 40.41 0.28 -2.87 16 22 C 0.02 0.58 11.95 67.32 0.80 1.39 16 23 O -0.19 -4.33 10.11 0.43 0.00 -4.33 16 24 C 0.21 5.09 6.44 88.39 0.57 5.66 16 25 C 0.03 0.53 0.99 -52.93 -0.05 0.48 16 26 C -0.14 -2.04 8.45 71.98 0.61 -1.43 16 27 C -0.14 -1.66 8.01 71.98 0.58 -1.08 16 28 C -0.14 -2.58 8.46 71.98 0.61 -1.97 16 29 N -0.48 -14.72 11.05 -293.05 -3.24 -17.96 16 30 H 0.05 1.31 7.53 -2.39 -0.02 1.30 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 34 H 0.01 0.51 6.64 -2.38 -0.02 0.49 16 35 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.05 2.80 6.06 -2.39 -0.01 2.78 16 37 H -0.01 -0.46 7.74 -2.39 -0.02 -0.48 16 38 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.41 15.08 6.46 -92.71 -0.60 14.48 16 41 H 0.26 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.62 398.40 2.71 -67.91 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.33 Total: 27.74 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 7.10 Total: 16.71 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -6.69 Total: -133.13 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.06 Total: -26.59 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.62 2.71 -67.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942050551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.092 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds