Wall clock time and date at job start Tue Mar 31 2020 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.52099 * 2 1 4 4 C 1.53194 * 109.49909 * 239.92488 * 2 1 3 5 5 N 1.46927 * 108.89087 * 185.48153 * 4 2 1 6 6 C 1.36938 * 120.62952 * 233.55303 * 5 4 2 7 7 H 1.08004 * 119.99743 * 27.96484 * 6 5 4 8 8 C 1.38809 * 120.00327 * 207.96044 * 6 5 4 9 9 N 1.31619 * 119.99669 * 17.50758 * 8 6 5 10 10 Si 1.86796 * 120.00467 * 197.50314 * 8 6 5 11 11 H 1.48499 * 109.46954 * 94.06791 * 10 8 6 12 12 H 1.48494 * 109.47528 * 214.06816 * 10 8 6 13 13 H 1.48504 * 109.47085 * 334.07259 * 10 8 6 14 14 C 1.46920 * 118.73819 * 53.53709 * 5 4 2 15 15 C 1.53185 * 108.77909 * 306.38753 * 14 5 4 16 16 C 1.53037 * 109.31076 * 54.63500 * 15 14 5 17 17 H 1.09008 * 109.46418 * 178.63080 * 16 15 14 18 18 N 1.46503 * 109.46131 * 58.65661 * 16 15 14 19 19 C 1.34779 * 119.99542 * 84.99883 * 18 16 15 20 20 O 1.21691 * 120.00435 * 0.02562 * 19 18 16 21 21 C 1.46661 * 119.99674 * 180.02562 * 19 18 16 22 22 O 1.34916 * 125.98762 * 0.02562 * 21 19 18 23 23 C 1.33931 * 109.38311 * 180.02562 * 22 21 19 24 24 C 1.35125 * 108.76931 * 0.02562 * 23 22 21 25 25 C 1.36546 * 125.98561 * 179.71620 * 21 19 18 26 26 C 1.50695 * 126.64681 * 359.96095 * 25 21 19 27 27 N 1.46902 * 109.47219 * 80.00332 * 26 25 21 28 28 C 1.46901 * 111.00239 * 66.04346 * 27 26 25 29 29 C 1.46894 * 110.99865 * 190.00075 * 27 26 25 30 30 H 1.08997 * 109.46386 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46979 * 300.07819 * 1 2 3 32 32 H 1.08994 * 109.46803 * 60.08046 * 1 2 3 33 33 H 1.08996 * 109.58668 * 65.62435 * 4 2 1 34 34 H 1.08999 * 109.58546 * 305.33799 * 4 2 1 35 35 H 0.97004 * 120.00381 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.58992 * 66.18201 * 14 5 4 37 37 H 1.09006 * 109.58610 * 186.60301 * 14 5 4 38 38 H 1.09003 * 109.50211 * 174.58967 * 15 14 5 39 39 H 1.08997 * 109.49894 * 294.65510 * 15 14 5 40 40 H 0.96993 * 120.00250 * 265.00417 * 18 16 15 41 41 H 1.08004 * 125.61372 * 179.97438 * 23 22 21 42 42 H 1.08005 * 126.44397 * 180.02562 * 24 23 22 43 43 H 1.09007 * 109.46931 * 199.99520 * 26 25 21 44 44 H 1.08996 * 109.47299 * 319.99687 * 26 25 21 45 45 H 1.08998 * 109.47041 * 60.00000 * 28 27 26 46 46 H 1.08998 * 109.47174 * 180.02562 * 28 27 26 47 47 H 1.09002 * 109.47035 * 300.00127 * 28 27 26 48 48 H 1.08997 * 109.47450 * 59.99614 * 29 27 26 49 49 H 1.09000 * 109.47018 * 179.97438 * 29 27 26 50 50 H 1.08995 * 109.47262 * 299.99060 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2497 5 7 3.5046 -0.8318 -1.1715 6 6 4.2931 -0.3834 -2.1973 7 1 3.9488 0.4201 -2.8315 8 6 5.5349 -0.9616 -2.4220 9 7 5.8178 -2.1366 -1.9007 10 14 6.8046 -0.0721 -3.4642 11 1 7.7037 0.7160 -2.5835 12 1 7.6037 -1.0654 -4.2257 13 1 6.1157 0.8403 -4.4119 14 6 4.1056 -1.4299 0.0284 15 6 3.5743 -0.6965 1.2639 16 6 2.0442 -0.7215 1.2483 17 1 1.6636 -0.2214 2.1389 18 7 1.5789 -2.1106 1.2321 19 6 1.4496 -2.7913 2.3881 20 8 1.7189 -2.2521 3.4453 21 6 0.9843 -4.1821 2.3719 22 8 0.6542 -4.8949 1.2750 23 6 0.2740 -6.1255 1.6424 24 6 0.3541 -6.2217 2.9879 25 6 0.8149 -4.9842 3.4639 26 6 1.0693 -4.6117 4.9018 27 7 -0.0696 -3.8397 5.4164 28 6 -1.2816 -4.6675 5.4790 29 6 0.2390 -3.2581 6.7296 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1578 -2.1389 34 1 1.6034 -1.7206 -1.2995 35 1 6.6854 -2.5408 -2.0580 36 1 3.8359 -2.4845 0.0853 37 1 5.1901 -1.3300 -0.0176 38 1 3.9371 -1.1913 2.1648 39 1 3.9218 0.3365 1.2512 40 1 1.3639 -2.5403 0.3896 41 1 -0.0449 -6.9111 0.9735 42 1 0.1145 -7.0897 3.5844 43 1 1.1921 -5.5176 5.4955 44 1 1.9754 -4.0093 4.9662 45 1 -1.1078 -5.5167 6.1399 46 1 -2.1094 -4.0714 5.8630 47 1 -1.5269 -5.0286 4.4802 48 1 1.0991 -2.5946 6.6400 49 1 -0.6208 -2.6916 7.0872 50 1 0.4678 -4.0562 7.4357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942582201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:48 Heat of formation + Delta-G solvation = 9.031767 kcal Electronic energy + Delta-G solvation = -30669.048738 eV Core-core repulsion = 26698.819746 eV Total energy + Delta-G solvation = -3970.228993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.68901 -39.61666 -37.73948 -37.25857 -34.25548 -33.30249 -32.43238 -31.15291 -30.49189 -29.60674 -27.61570 -27.26901 -25.83126 -25.21880 -23.30862 -22.19761 -21.94985 -21.18080 -21.01336 -19.66470 -18.48760 -18.07373 -16.69960 -16.39462 -16.16626 -15.31891 -15.22101 -15.16049 -14.81709 -14.64316 -14.46452 -14.08493 -13.84573 -13.62942 -13.29312 -13.23686 -12.98649 -12.85268 -12.56729 -12.48778 -12.22049 -12.05828 -11.81158 -11.71689 -11.52403 -11.45110 -11.33613 -11.05237 -10.78696 -10.69803 -10.31938 -10.18305 -10.02512 -9.89549 -9.74196 -9.69175 -9.39699 -8.72757 -8.47256 -8.41537 -8.33227 -6.66352 -5.78034 -3.20927 1.17932 2.30035 2.81271 3.38424 3.45567 3.45746 3.46639 3.59112 4.06909 4.49694 4.65059 4.71218 4.96142 5.10269 5.18543 5.22694 5.28815 5.33750 5.36206 5.40100 5.48261 5.52962 5.55001 5.63653 5.66698 5.78208 5.87361 5.89210 5.96853 5.98271 6.02788 6.12652 6.19978 6.29400 6.32070 6.39343 6.49296 6.65391 6.69007 6.77904 6.86533 6.93865 6.97418 7.02117 7.05372 7.39253 7.68917 7.80688 7.89315 8.45153 8.48877 9.21494 9.84919 10.41317 11.29933 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.003153 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.336557 B = 8878.262755 C = 9240.445700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 H 0.082 0.918 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.154 4.154 16 C 0.162 3.838 17 H 0.076 0.924 18 N -0.701 5.701 19 C 0.599 3.401 20 O -0.512 6.512 21 C -0.045 4.045 22 O -0.160 6.160 23 C -0.011 4.011 24 C -0.222 4.222 25 C -0.098 4.098 26 C 0.124 3.876 27 N -0.531 5.531 28 C 0.024 3.976 29 C 0.030 3.970 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.014 0.986 35 H 0.253 0.747 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.404 0.596 41 H 0.207 0.793 42 H 0.150 0.850 43 H 0.039 0.961 44 H 0.098 0.902 45 H 0.021 0.979 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.006 -6.621 12.303 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.100 0.900 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.219 1.219 13 H -0.204 1.204 14 C 0.048 3.952 15 C -0.194 4.194 16 C 0.058 3.942 17 H 0.094 0.906 18 N -0.352 5.352 19 C 0.384 3.616 20 O -0.390 6.390 21 C -0.099 4.099 22 O -0.055 6.055 23 C -0.081 4.081 24 C -0.242 4.242 25 C -0.101 4.101 26 C -0.003 4.003 27 N -0.254 5.254 28 C -0.124 4.124 29 C -0.118 4.118 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.240 0.760 41 H 0.224 0.776 42 H 0.168 0.832 43 H 0.057 0.943 44 H 0.116 0.884 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.708 -5.778 12.384 19.356 hybrid contribution 0.699 -0.882 -0.319 1.170 sum -13.009 -6.660 12.065 18.951 Atomic orbital electron populations 1.21757 0.95691 1.01402 1.01084 1.21951 0.94613 1.00722 0.96679 0.89958 1.20906 0.86097 0.96152 0.94382 1.44063 0.99160 1.71557 1.16563 1.19185 0.98493 1.12024 1.08610 0.91664 1.25033 0.99939 0.95305 0.99264 1.70047 1.22062 1.14192 1.48139 0.86287 0.81792 0.78911 0.79836 1.21492 1.21853 1.20415 1.20715 0.99203 0.92968 0.82264 1.22566 0.94149 1.01959 1.00745 1.20944 0.95043 0.80110 0.98101 0.90626 1.46049 1.66169 1.14509 1.08482 1.16468 0.78144 0.82216 0.84751 1.90832 1.50818 1.66971 1.30374 1.22167 1.09053 0.94239 0.84427 1.84126 1.64238 1.22598 1.34500 1.24258 1.01795 0.85959 0.96114 1.21654 1.08519 0.99183 0.94825 1.20282 1.01469 0.92819 0.95552 1.20484 0.94894 0.96057 0.88862 1.61836 1.03494 1.34540 1.25571 1.22414 0.92943 0.95592 1.01479 1.22331 1.02328 0.98701 0.88445 0.93063 0.93206 0.92769 0.92512 0.96874 0.93688 0.96384 0.89687 0.92640 0.91704 0.75972 0.77643 0.83195 0.94331 0.88417 0.96083 0.91721 0.91380 0.90792 0.91578 0.96155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.06 37.16 0.34 -1.61 16 2 C -0.12 -1.99 2.67 -90.48 -0.24 -2.23 16 3 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.15 3.02 5.49 -3.71 -0.02 3.00 16 5 N -0.59 -14.39 3.00 -172.33 -0.52 -14.91 16 6 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 7 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 8 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 9 N -0.90 -26.02 11.22 55.49 0.62 -25.40 16 10 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.17 4.15 5.05 -3.72 -0.02 4.13 16 15 C -0.15 -3.07 5.78 -26.62 -0.15 -3.22 16 16 C 0.16 2.83 2.22 -67.87 -0.15 2.68 16 17 H 0.08 1.32 7.57 -51.92 -0.39 0.93 16 18 N -0.70 -11.90 3.59 -55.06 -0.20 -12.10 16 19 C 0.60 10.36 7.75 -12.86 -0.10 10.26 16 20 O -0.51 -9.68 14.65 5.20 0.08 -9.60 16 21 C -0.05 -0.70 7.13 -36.79 -0.26 -0.97 16 22 O -0.16 -2.26 10.40 4.99 0.05 -2.21 16 23 C -0.01 -0.12 12.08 29.62 0.36 0.24 16 24 C -0.22 -2.40 10.22 -39.89 -0.41 -2.80 16 25 C -0.10 -1.33 4.76 -104.43 -0.50 -1.82 16 26 C 0.12 1.60 4.60 -4.98 -0.02 1.57 16 27 N -0.53 -6.63 5.01 -252.73 -1.27 -7.90 16 28 C 0.02 0.25 9.37 60.07 0.56 0.81 16 29 C 0.03 0.32 9.57 60.06 0.57 0.89 16 30 H 0.05 0.70 7.53 -51.93 -0.39 0.31 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 34 H 0.01 0.27 6.65 -51.93 -0.35 -0.08 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.02 0.46 7.74 -51.93 -0.40 0.05 16 37 H 0.08 2.30 6.06 -51.93 -0.31 1.99 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.40 6.85 6.48 -40.82 -0.26 6.58 16 41 H 0.21 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.10 1.43 6.95 -51.93 -0.36 1.07 16 45 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 47 H 0.07 0.73 6.79 -51.93 -0.35 0.37 16 48 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 49 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 50 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 394.50 15.07 5.94 5.94 Total: -1.00 -31.06 394.50 -8.86 -39.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.28 Total: 5.70 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.27 Total: 3.94 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -1.36 Total: -60.30 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.13 Total: -11.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.06 -8.86 -39.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942582201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.956 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds