Wall clock time and date at job start Tue Mar 31 2020 18:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.52099 * 2 1 4 4 C 1.53194 * 109.49909 * 239.92488 * 2 1 3 5 5 N 1.46927 * 108.89087 * 185.48153 * 4 2 1 6 6 C 1.36938 * 120.62952 * 233.55303 * 5 4 2 7 7 H 1.08004 * 119.99743 * 27.96484 * 6 5 4 8 8 C 1.38809 * 120.00327 * 207.96044 * 6 5 4 9 9 N 1.31619 * 119.99669 * 17.50758 * 8 6 5 10 10 Si 1.86796 * 120.00467 * 197.50314 * 8 6 5 11 11 H 1.48499 * 109.46954 * 94.06791 * 10 8 6 12 12 H 1.48494 * 109.47528 * 214.06816 * 10 8 6 13 13 H 1.48504 * 109.47085 * 334.07259 * 10 8 6 14 14 C 1.46920 * 118.73819 * 53.53709 * 5 4 2 15 15 C 1.53185 * 108.77909 * 306.38753 * 14 5 4 16 16 C 1.53037 * 109.31076 * 54.63500 * 15 14 5 17 17 H 1.09008 * 109.46418 * 178.63080 * 16 15 14 18 18 N 1.46503 * 109.46131 * 58.65661 * 16 15 14 19 19 C 1.34779 * 119.99542 * 84.99883 * 18 16 15 20 20 O 1.21691 * 120.00435 * 0.02562 * 19 18 16 21 21 C 1.46661 * 119.99674 * 180.02562 * 19 18 16 22 22 O 1.34916 * 125.98762 * 0.02562 * 21 19 18 23 23 C 1.33931 * 109.38311 * 180.02562 * 22 21 19 24 24 C 1.35125 * 108.76931 * 0.02562 * 23 22 21 25 25 C 1.36546 * 125.98561 * 179.71620 * 21 19 18 26 26 C 1.50695 * 126.64681 * 359.96095 * 25 21 19 27 27 N 1.46902 * 109.47219 * 80.00332 * 26 25 21 28 28 C 1.46901 * 111.00239 * 66.04346 * 27 26 25 29 29 C 1.46894 * 110.99865 * 190.00075 * 27 26 25 30 30 H 1.08997 * 109.46386 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46979 * 300.07819 * 1 2 3 32 32 H 1.08994 * 109.46803 * 60.08046 * 1 2 3 33 33 H 1.08996 * 109.58668 * 65.62435 * 4 2 1 34 34 H 1.08999 * 109.58546 * 305.33799 * 4 2 1 35 35 H 0.97004 * 120.00381 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.58992 * 66.18201 * 14 5 4 37 37 H 1.09006 * 109.58610 * 186.60301 * 14 5 4 38 38 H 1.09003 * 109.50211 * 174.58967 * 15 14 5 39 39 H 1.08997 * 109.49894 * 294.65510 * 15 14 5 40 40 H 0.96993 * 120.00250 * 265.00417 * 18 16 15 41 41 H 1.08004 * 125.61372 * 179.97438 * 23 22 21 42 42 H 1.08005 * 126.44397 * 180.02562 * 24 23 22 43 43 H 1.09007 * 109.46931 * 199.99520 * 26 25 21 44 44 H 1.08996 * 109.47299 * 319.99687 * 26 25 21 45 45 H 1.08998 * 109.47041 * 60.00000 * 28 27 26 46 46 H 1.08998 * 109.47174 * 180.02562 * 28 27 26 47 47 H 1.09002 * 109.47035 * 300.00127 * 28 27 26 48 48 H 1.08997 * 109.47450 * 59.99614 * 29 27 26 49 49 H 1.09000 * 109.47018 * 179.97438 * 29 27 26 50 50 H 1.08995 * 109.47262 * 299.99060 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2497 5 7 3.5046 -0.8318 -1.1715 6 6 4.2931 -0.3834 -2.1973 7 1 3.9488 0.4201 -2.8315 8 6 5.5349 -0.9616 -2.4220 9 7 5.8178 -2.1366 -1.9007 10 14 6.8046 -0.0721 -3.4642 11 1 7.7037 0.7160 -2.5835 12 1 7.6037 -1.0654 -4.2257 13 1 6.1157 0.8403 -4.4119 14 6 4.1056 -1.4299 0.0284 15 6 3.5743 -0.6965 1.2639 16 6 2.0442 -0.7215 1.2483 17 1 1.6636 -0.2214 2.1389 18 7 1.5789 -2.1106 1.2321 19 6 1.4496 -2.7913 2.3881 20 8 1.7189 -2.2521 3.4453 21 6 0.9843 -4.1821 2.3719 22 8 0.6542 -4.8949 1.2750 23 6 0.2740 -6.1255 1.6424 24 6 0.3541 -6.2217 2.9879 25 6 0.8149 -4.9842 3.4639 26 6 1.0693 -4.6117 4.9018 27 7 -0.0696 -3.8397 5.4164 28 6 -1.2816 -4.6675 5.4790 29 6 0.2390 -3.2581 6.7296 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1578 -2.1389 34 1 1.6034 -1.7206 -1.2995 35 1 6.6854 -2.5408 -2.0580 36 1 3.8359 -2.4845 0.0853 37 1 5.1901 -1.3300 -0.0176 38 1 3.9371 -1.1913 2.1648 39 1 3.9218 0.3365 1.2512 40 1 1.3639 -2.5403 0.3896 41 1 -0.0449 -6.9111 0.9735 42 1 0.1145 -7.0897 3.5844 43 1 1.1921 -5.5176 5.4955 44 1 1.9754 -4.0093 4.9662 45 1 -1.1078 -5.5167 6.1399 46 1 -2.1094 -4.0714 5.8630 47 1 -1.5269 -5.0286 4.4802 48 1 1.0991 -2.5946 6.6400 49 1 -0.6208 -2.6916 7.0872 50 1 0.4678 -4.0562 7.4357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942582201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:47 Heat of formation + Delta-G solvation = -11.114915 kcal Electronic energy + Delta-G solvation = -30669.922364 eV Core-core repulsion = 26698.819746 eV Total energy + Delta-G solvation = -3971.102618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.67045 -41.03745 -39.09601 -38.32890 -35.99233 -34.34489 -33.85371 -32.89736 -32.02606 -30.82744 -28.42071 -28.30661 -27.39987 -26.95434 -24.54929 -23.57586 -23.05484 -22.73366 -22.19724 -20.78796 -20.04859 -19.20511 -18.62082 -17.43707 -17.18633 -16.84792 -16.58820 -16.15728 -16.12511 -15.94251 -15.74826 -15.45654 -15.34819 -15.14272 -14.73385 -14.48834 -14.38378 -14.02958 -13.84029 -13.52767 -13.37507 -13.15654 -13.09098 -12.97291 -12.70190 -12.67412 -12.58466 -12.54349 -12.44461 -12.35976 -12.15997 -11.94625 -11.67364 -11.47764 -11.14242 -11.05802 -10.77753 -10.53263 -10.04989 -9.53258 -9.20796 -8.66642 -7.86235 -5.31650 0.10742 1.42473 1.46776 1.48943 1.57378 1.80307 2.20394 2.36105 2.51807 3.19649 3.28513 3.65620 3.70042 3.75673 3.85962 3.95663 4.08403 4.13136 4.28908 4.36902 4.41706 4.49459 4.53592 4.57149 4.60201 4.67012 4.72139 4.76818 4.78241 4.80432 4.95055 5.00803 5.01851 5.02623 5.04097 5.06257 5.10857 5.18343 5.30013 5.41679 5.43060 5.50146 5.57446 5.65643 5.73604 5.91766 6.09131 6.18659 6.39064 6.56792 7.14934 7.16788 7.86296 8.38297 9.19645 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.003153 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.336557 B = 8878.262755 C = 9240.445700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.082 0.918 4 C 0.150 3.850 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.070 0.930 8 C -0.050 4.050 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.266 1.266 14 C 0.189 3.811 15 C -0.142 4.142 16 C 0.169 3.831 17 H 0.082 0.918 18 N -0.700 5.700 19 C 0.597 3.403 20 O -0.538 6.538 21 C -0.090 4.090 22 O -0.177 6.177 23 C 0.004 3.996 24 C -0.225 4.225 25 C -0.091 4.091 26 C 0.126 3.874 27 N -0.554 5.554 28 C 0.028 3.972 29 C 0.033 3.967 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.248 0.752 36 H -0.004 1.004 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.404 0.596 41 H 0.251 0.749 42 H 0.182 0.818 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.076 0.924 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.191 -7.243 12.539 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.100 0.900 4 C 0.025 3.975 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.087 0.913 8 C -0.246 4.246 9 N -0.580 5.580 10 Si 0.794 3.206 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.190 1.190 14 C 0.063 3.937 15 C -0.182 4.182 16 C 0.065 3.935 17 H 0.100 0.900 18 N -0.351 5.351 19 C 0.384 3.616 20 O -0.417 6.417 21 C -0.143 4.143 22 O -0.073 6.073 23 C -0.065 4.065 24 C -0.244 4.244 25 C -0.095 4.095 26 C -0.001 4.001 27 N -0.278 5.278 28 C -0.120 4.120 29 C -0.115 4.115 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.240 0.760 41 H 0.267 0.733 42 H 0.199 0.801 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.095 0.905 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.933 -6.383 12.621 21.305 hybrid contribution 1.316 -0.795 -0.369 1.582 sum -14.616 -7.178 12.252 20.378 Atomic orbital electron populations 1.21676 0.92858 1.01949 1.02502 1.21805 0.96786 0.99830 0.94222 0.89975 1.21061 0.83525 0.96741 0.96221 1.44273 1.01020 1.71506 1.16167 1.19530 0.99038 1.11758 1.08708 0.91265 1.25776 1.01810 0.95979 1.01013 1.70203 1.22082 1.15699 1.49976 0.85284 0.79270 0.77692 0.78386 1.21628 1.22375 1.19022 1.20376 0.97030 0.92277 0.83989 1.22387 0.96310 1.01150 0.98360 1.20817 0.92930 0.80903 0.98861 0.90012 1.45987 1.66299 1.14242 1.08572 1.16747 0.77514 0.83109 0.84268 1.90804 1.51988 1.67941 1.30967 1.21856 1.12704 0.94080 0.85612 1.84105 1.64809 1.23967 1.34401 1.25247 0.99001 0.85152 0.97075 1.21993 1.08233 0.98979 0.95225 1.20615 0.99868 0.93625 0.95368 1.20413 0.94253 0.96390 0.89063 1.61797 1.04007 1.35367 1.26649 1.22406 0.92114 0.95956 1.01555 1.22306 1.02131 0.98946 0.88129 0.92967 0.91947 0.91187 0.92181 0.96622 0.94314 0.98640 0.93481 0.93248 0.91604 0.76029 0.73324 0.80113 0.92430 0.91057 0.94555 0.90887 0.91939 0.92519 0.90477 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.06 71.98 0.65 -2.69 16 2 C -0.11 -3.42 2.67 -10.70 -0.03 -3.45 16 3 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 4 C 0.15 5.91 5.49 86.36 0.47 6.39 16 5 N -0.61 -30.03 3.00 -699.11 -2.09 -32.12 16 6 C -0.26 -14.18 9.58 84.03 0.81 -13.38 16 7 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 8 C -0.05 -2.82 4.90 84.86 0.42 -2.40 16 9 N -0.93 -55.78 11.22 21.65 0.24 -55.53 16 10 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 14 C 0.19 9.39 5.05 86.36 0.44 9.82 16 15 C -0.14 -5.82 5.78 30.67 0.18 -5.65 16 16 C 0.17 5.91 2.22 45.03 0.10 6.01 16 17 H 0.08 2.82 7.57 -2.38 -0.02 2.80 16 18 N -0.70 -24.11 3.59 -446.33 -1.60 -25.71 16 19 C 0.60 21.11 7.75 86.44 0.67 21.78 16 20 O -0.54 -20.94 14.65 -4.32 -0.06 -21.00 16 21 C -0.09 -2.79 7.13 24.08 0.17 -2.61 16 22 O -0.18 -4.86 10.40 -5.07 -0.05 -4.91 16 23 C 0.00 0.08 12.08 67.10 0.81 0.89 16 24 C -0.23 -4.25 10.22 22.07 0.23 -4.02 16 25 C -0.09 -2.39 4.76 -19.74 -0.09 -2.48 16 26 C 0.13 3.18 4.60 85.56 0.39 3.57 16 27 N -0.55 -13.32 5.01 -953.50 -4.78 -18.09 16 28 C 0.03 0.50 9.37 127.69 1.20 1.70 16 29 C 0.03 0.66 9.57 127.69 1.22 1.89 16 30 H 0.05 1.32 7.53 -2.39 -0.02 1.30 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 34 H 0.02 0.63 6.65 -2.39 -0.02 0.61 16 35 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.00 -0.24 7.74 -2.39 -0.02 -0.26 16 37 H 0.05 2.68 6.06 -2.38 -0.01 2.67 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.40 13.87 6.48 -92.71 -0.60 13.27 16 41 H 0.25 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.06 1.19 8.12 -2.38 -0.02 1.17 16 44 H 0.07 2.16 6.95 -2.39 -0.02 2.14 16 45 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 47 H 0.06 1.20 6.79 -2.39 -0.02 1.18 16 48 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 49 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 50 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -69.67 394.50 1.64 -68.03 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.33 Total: 26.82 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 7.63 Total: 15.36 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -8.23 Total: -131.46 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.12 Total: -25.91 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.67 1.64 -68.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942582201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.911 kcal (2) G-P(sol) polarization free energy of solvation -69.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds