Wall clock time and date at job start Tue Mar 31 2020 18:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.49695 * 2 1 4 4 C 1.53189 * 109.52645 * 120.08454 * 2 1 3 5 5 N 1.46929 * 108.77394 * 174.60294 * 4 2 1 6 6 C 1.36934 * 120.62819 * 126.37044 * 5 4 2 7 7 H 1.08002 * 120.00045 * 212.01637 * 6 5 4 8 8 C 1.38816 * 120.00518 * 32.02182 * 6 5 4 9 9 N 1.31616 * 119.99335 * 11.80603 * 8 6 5 10 10 Si 1.86792 * 120.00119 * 191.81061 * 8 6 5 11 11 H 1.48499 * 109.47538 * 59.99740 * 10 8 6 12 12 H 1.48503 * 109.47026 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47308 * 299.99727 * 10 8 6 14 14 C 1.46925 * 118.73889 * 306.38926 * 5 4 2 15 15 C 1.53191 * 108.77497 * 53.60967 * 14 5 4 16 16 C 1.53038 * 109.31183 * 305.36399 * 15 14 5 17 17 H 1.08993 * 109.45166 * 301.35239 * 16 15 14 18 18 N 1.46505 * 109.45584 * 181.38221 * 16 15 14 19 19 C 1.34777 * 119.99732 * 84.66157 * 18 16 15 20 20 O 1.21615 * 120.00243 * 359.97438 * 19 18 16 21 21 C 1.47420 * 120.00272 * 179.97438 * 19 18 16 22 22 N 1.36067 * 126.44378 * 4.87826 * 21 19 18 23 23 C 1.29938 * 108.47462 * 179.82394 * 22 21 19 24 24 O 1.34048 * 109.24371 * 0.44845 * 23 22 21 25 25 C 1.34259 * 108.22821 * 359.71883 * 24 23 22 26 26 C 1.50696 * 126.52879 * 180.02562 * 25 24 23 27 27 C 1.53003 * 109.47221 * 237.50078 * 26 25 24 28 28 C 1.53004 * 109.47169 * 357.50138 * 26 25 24 29 29 C 1.53002 * 109.46956 * 117.50353 * 26 25 24 30 30 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47074 * 300.05815 * 1 2 3 32 32 H 1.08994 * 109.47120 * 60.05788 * 1 2 3 33 33 H 1.09004 * 109.58387 * 294.38417 * 4 2 1 34 34 H 1.08993 * 109.59043 * 54.81333 * 4 2 1 35 35 H 0.97008 * 119.99720 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58777 * 173.39584 * 14 5 4 37 37 H 1.08999 * 109.58649 * 293.82068 * 14 5 4 38 38 H 1.08997 * 109.49891 * 185.40895 * 15 14 5 39 39 H 1.09003 * 109.49691 * 65.31709 * 15 14 5 40 40 H 0.96996 * 120.00671 * 264.92750 * 18 16 15 41 41 H 1.07998 * 125.38226 * 180.16627 * 23 22 21 42 42 H 1.09001 * 109.46712 * 69.71913 * 27 26 25 43 43 H 1.09006 * 109.47206 * 189.71687 * 27 26 25 44 44 H 1.09001 * 109.47079 * 309.71752 * 27 26 25 45 45 H 1.08996 * 109.46762 * 59.99713 * 28 26 25 46 46 H 1.08994 * 109.47049 * 179.97438 * 28 26 25 47 47 H 1.08998 * 109.46787 * 299.99840 * 28 26 25 48 48 H 1.08991 * 109.47370 * 65.29899 * 29 26 25 49 49 H 1.09008 * 109.46799 * 185.29959 * 29 26 25 50 50 H 1.08997 * 109.46673 * 305.29578 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2493 5 7 3.5054 -0.8283 1.1688 6 6 4.2944 -0.3775 2.1931 7 1 5.2732 0.0277 1.9827 8 6 3.8364 -0.4412 3.5020 9 7 2.7571 -1.1380 3.7882 10 14 4.7517 0.4620 4.8568 11 1 4.7741 1.9159 4.5550 12 1 4.0643 0.2368 6.1538 13 1 6.1439 -0.0480 4.9388 14 6 4.1060 -1.4254 -0.0318 15 6 3.5708 -0.6939 -1.2668 16 6 2.0408 -0.7227 -1.2486 17 1 1.6974 -1.7570 -1.2355 18 7 1.5258 -0.0525 -2.4453 19 6 1.4030 -0.7363 -3.6003 20 8 1.7199 -1.9094 -3.6492 21 6 0.8843 -0.0622 -4.8044 22 7 0.5798 1.2586 -4.9234 23 6 0.1559 1.4761 -6.1323 24 8 0.1630 0.3237 -6.8170 25 6 0.6142 -0.6449 -6.0042 26 6 0.7890 -2.1003 -6.3540 27 6 -0.0331 -2.9587 -5.3905 28 6 0.3104 -2.3414 -7.7871 29 6 2.2671 -2.4783 -6.2395 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7645 -0.1580 2.1388 34 1 1.6065 -1.7217 1.2978 35 1 2.4372 -1.1829 4.7029 36 1 5.1902 -1.3228 0.0123 37 1 3.8387 -2.4807 -0.0878 38 1 3.9333 -1.1881 -2.1680 39 1 3.9154 0.3402 -1.2548 40 1 1.2770 0.8842 -2.4075 41 1 -0.1575 2.4332 -6.5223 42 1 -1.0947 -2.8154 -5.5918 43 1 0.2246 -4.0087 -5.5292 44 1 0.1853 -2.6635 -4.3642 45 1 0.8960 -1.7298 -8.4734 46 1 0.4372 -3.3939 -8.0403 47 1 -0.7427 -2.0720 -7.8686 48 1 2.5836 -2.3964 -5.1998 49 1 2.4075 -3.5035 -6.5824 50 1 2.8631 -1.8045 -6.8550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944047139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:27 Heat of formation + Delta-G solvation = -0.654009 kcal Electronic energy + Delta-G solvation = -30552.132109 eV Core-core repulsion = 26581.483110 eV Total energy + Delta-G solvation = -3970.648999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.67601 -39.79871 -37.86698 -36.84824 -34.97706 -34.44388 -32.25967 -31.80356 -30.06787 -29.22847 -27.48901 -27.33991 -25.94795 -25.45718 -23.89201 -23.10973 -22.07866 -20.85351 -20.54463 -19.76725 -19.22440 -18.08786 -16.96196 -16.75810 -16.21033 -15.85309 -15.38262 -15.03639 -14.76622 -14.65016 -14.07977 -14.00951 -13.79182 -13.62893 -13.46256 -13.10947 -12.85987 -12.55760 -12.47845 -12.29713 -12.06285 -11.82809 -11.76159 -11.51088 -11.32905 -11.26359 -11.20155 -11.13881 -10.99690 -10.76922 -10.72430 -10.63537 -10.29993 -10.12880 -9.98073 -9.85619 -9.66391 -9.44148 -9.10144 -8.60814 -8.44438 -6.60506 -5.78138 -3.25595 0.98101 1.91004 2.33269 3.29183 3.32924 3.39215 3.44256 3.45368 3.88547 4.26414 4.49685 4.57640 4.72428 4.83360 4.92430 5.25732 5.30651 5.36247 5.39855 5.46654 5.47203 5.48718 5.59548 5.67576 5.70575 5.72927 5.82513 5.86104 5.89865 5.92228 5.97553 6.12446 6.14786 6.23410 6.34324 6.36855 6.41625 6.52626 6.58376 6.65409 6.72650 6.82156 6.98025 7.02279 7.25046 7.36329 7.64368 7.76958 7.81473 8.36295 8.49014 9.23163 9.84445 10.43558 11.30461 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002731 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.689175 B =10251.207417 C =10600.396027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.063 0.937 8 C 0.006 3.994 9 N -0.904 5.904 10 Si 0.904 3.096 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.700 5.700 19 C 0.594 3.406 20 O -0.524 6.524 21 C -0.073 4.073 22 N -0.461 5.461 23 C 0.166 3.834 24 O -0.198 6.198 25 C 0.054 3.946 26 C 0.024 3.976 27 C -0.154 4.154 28 C -0.145 4.145 29 C -0.159 4.159 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.021 0.979 35 H 0.255 0.745 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.404 0.596 41 H 0.253 0.747 42 H 0.047 0.953 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.105 0.895 49 H 0.065 0.935 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 1.994 -22.379 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.081 0.919 8 C -0.193 4.193 9 N -0.548 5.548 10 Si 0.734 3.266 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.021 3.979 15 C -0.180 4.180 16 C 0.054 3.946 17 H 0.102 0.898 18 N -0.348 5.348 19 C 0.380 3.620 20 O -0.403 6.403 21 C -0.193 4.193 22 N -0.190 5.190 23 C -0.062 4.062 24 O -0.084 6.084 25 C -0.003 4.003 26 C 0.023 3.977 27 C -0.211 4.211 28 C -0.203 4.203 29 C -0.215 4.215 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.239 0.761 41 H 0.269 0.731 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.123 0.877 49 H 0.084 0.916 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.411 1.587 -21.726 23.010 hybrid contribution 0.104 0.875 0.035 0.882 sum -7.307 2.462 -21.690 23.020 Atomic orbital electron populations 1.21727 0.95908 1.01410 1.00679 1.22185 0.94721 1.00698 0.96768 0.91425 1.20775 0.83140 0.96972 0.93359 1.44037 1.01658 1.69369 1.16427 1.19117 1.00047 1.34051 0.85200 0.91914 1.25170 0.98224 0.98559 0.97370 1.69971 1.24799 1.41282 1.18712 0.86353 0.79293 0.79706 0.81270 1.21001 1.21615 1.20848 1.20881 0.96650 0.94253 0.86078 1.22404 0.94657 1.01414 0.99564 1.21140 0.93920 0.97183 0.82384 0.89751 1.46152 1.64067 1.14873 1.09704 1.16710 0.77986 0.85650 0.81616 1.90613 1.50710 1.15150 1.83832 1.21604 1.11020 0.90100 0.96544 1.70743 1.14306 1.15176 1.18790 1.27979 1.01233 0.90409 0.86627 1.84362 1.64301 1.17640 1.42081 1.23897 0.96318 0.91663 0.88408 1.19230 0.98699 0.82981 0.96755 1.22198 0.97736 0.99204 1.01958 1.21939 1.01356 1.02469 0.94505 1.22253 0.91975 1.00965 1.06329 0.93038 0.92601 0.93839 0.89225 0.96060 0.93528 0.92586 0.96139 0.92615 0.92341 0.76139 0.73139 0.93370 0.91265 0.88612 0.92293 0.91366 0.92328 0.87655 0.91573 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.03 37.16 0.34 -1.89 16 2 C -0.12 -2.27 2.46 -90.50 -0.22 -2.49 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.18 4.29 4.54 -3.71 -0.02 4.27 16 5 N -0.59 -14.76 2.98 -172.32 -0.51 -15.27 16 6 C -0.25 -6.94 9.57 -15.06 -0.14 -7.09 16 7 H 0.06 1.69 7.86 -52.49 -0.41 1.27 16 8 C 0.01 0.16 5.01 -17.43 -0.09 0.07 16 9 N -0.90 -25.96 11.17 55.49 0.62 -25.34 16 10 Si 0.90 21.58 29.57 -169.99 -5.03 16.56 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.15 3.18 6.52 -3.71 -0.02 3.15 16 15 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 16 C 0.16 2.73 1.87 -67.89 -0.13 2.60 16 17 H 0.08 1.61 7.59 -51.93 -0.39 1.21 16 18 N -0.70 -10.62 4.36 -54.84 -0.24 -10.85 16 19 C 0.59 9.03 7.25 -12.52 -0.09 8.93 16 20 O -0.52 -8.54 9.78 5.26 0.05 -8.49 16 21 C -0.07 -0.98 6.81 -83.02 -0.57 -1.55 16 22 N -0.46 -5.62 11.07 -11.48 -0.13 -5.75 16 23 C 0.17 1.45 13.19 51.96 0.69 2.14 16 24 O -0.20 -2.02 10.19 6.51 0.07 -1.95 16 25 C 0.05 0.64 5.73 -35.08 -0.20 0.44 16 26 C 0.02 0.26 0.75 -155.66 -0.12 0.14 16 27 C -0.15 -1.71 8.17 37.16 0.30 -1.41 16 28 C -0.15 -1.21 8.05 37.16 0.30 -0.91 16 29 C -0.16 -1.76 8.24 37.16 0.31 -1.45 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 33 H 0.09 2.34 6.20 -51.93 -0.32 2.01 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.40 5.76 8.04 -40.82 -0.33 5.43 16 41 H 0.25 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.05 0.49 8.12 -51.93 -0.42 0.06 16 43 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.10 1.32 4.51 -51.93 -0.23 1.08 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.11 1.45 4.71 -51.93 -0.24 1.20 16 49 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 50 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -30.56 387.78 -7.34 -37.90 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.20 Total: 5.10 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 0.18 Total: 2.25 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.26 Total: -57.21 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.12 Total: -10.44 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.56 -7.34 -37.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944047139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.245 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds