Wall clock time and date at job start Tue Mar 31 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.49695 * 2 1 4 4 C 1.53189 * 109.52645 * 120.08454 * 2 1 3 5 5 N 1.46929 * 108.77394 * 174.60294 * 4 2 1 6 6 C 1.36934 * 120.62819 * 126.37044 * 5 4 2 7 7 H 1.08002 * 120.00045 * 212.01637 * 6 5 4 8 8 C 1.38816 * 120.00518 * 32.02182 * 6 5 4 9 9 N 1.31616 * 119.99335 * 11.80603 * 8 6 5 10 10 Si 1.86792 * 120.00119 * 191.81061 * 8 6 5 11 11 H 1.48499 * 109.47538 * 59.99740 * 10 8 6 12 12 H 1.48503 * 109.47026 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47308 * 299.99727 * 10 8 6 14 14 C 1.46925 * 118.73889 * 306.38926 * 5 4 2 15 15 C 1.53191 * 108.77497 * 53.60967 * 14 5 4 16 16 C 1.53038 * 109.31183 * 305.36399 * 15 14 5 17 17 H 1.08993 * 109.45166 * 301.35239 * 16 15 14 18 18 N 1.46505 * 109.45584 * 181.38221 * 16 15 14 19 19 C 1.34777 * 119.99732 * 84.66157 * 18 16 15 20 20 O 1.21615 * 120.00243 * 359.97438 * 19 18 16 21 21 C 1.47420 * 120.00272 * 179.97438 * 19 18 16 22 22 N 1.36067 * 126.44378 * 4.87826 * 21 19 18 23 23 C 1.29938 * 108.47462 * 179.82394 * 22 21 19 24 24 O 1.34048 * 109.24371 * 0.44845 * 23 22 21 25 25 C 1.34259 * 108.22821 * 359.71883 * 24 23 22 26 26 C 1.50696 * 126.52879 * 180.02562 * 25 24 23 27 27 C 1.53003 * 109.47221 * 237.50078 * 26 25 24 28 28 C 1.53004 * 109.47169 * 357.50138 * 26 25 24 29 29 C 1.53002 * 109.46956 * 117.50353 * 26 25 24 30 30 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47074 * 300.05815 * 1 2 3 32 32 H 1.08994 * 109.47120 * 60.05788 * 1 2 3 33 33 H 1.09004 * 109.58387 * 294.38417 * 4 2 1 34 34 H 1.08993 * 109.59043 * 54.81333 * 4 2 1 35 35 H 0.97008 * 119.99720 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58777 * 173.39584 * 14 5 4 37 37 H 1.08999 * 109.58649 * 293.82068 * 14 5 4 38 38 H 1.08997 * 109.49891 * 185.40895 * 15 14 5 39 39 H 1.09003 * 109.49691 * 65.31709 * 15 14 5 40 40 H 0.96996 * 120.00671 * 264.92750 * 18 16 15 41 41 H 1.07998 * 125.38226 * 180.16627 * 23 22 21 42 42 H 1.09001 * 109.46712 * 69.71913 * 27 26 25 43 43 H 1.09006 * 109.47206 * 189.71687 * 27 26 25 44 44 H 1.09001 * 109.47079 * 309.71752 * 27 26 25 45 45 H 1.08996 * 109.46762 * 59.99713 * 28 26 25 46 46 H 1.08994 * 109.47049 * 179.97438 * 28 26 25 47 47 H 1.08998 * 109.46787 * 299.99840 * 28 26 25 48 48 H 1.08991 * 109.47370 * 65.29899 * 29 26 25 49 49 H 1.09008 * 109.46799 * 185.29959 * 29 26 25 50 50 H 1.08997 * 109.46673 * 305.29578 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2493 5 7 3.5054 -0.8283 1.1688 6 6 4.2944 -0.3775 2.1931 7 1 5.2732 0.0277 1.9827 8 6 3.8364 -0.4412 3.5020 9 7 2.7571 -1.1380 3.7882 10 14 4.7517 0.4620 4.8568 11 1 4.7741 1.9159 4.5550 12 1 4.0643 0.2368 6.1538 13 1 6.1439 -0.0480 4.9388 14 6 4.1060 -1.4254 -0.0318 15 6 3.5708 -0.6939 -1.2668 16 6 2.0408 -0.7227 -1.2486 17 1 1.6974 -1.7570 -1.2355 18 7 1.5258 -0.0525 -2.4453 19 6 1.4030 -0.7363 -3.6003 20 8 1.7199 -1.9094 -3.6492 21 6 0.8843 -0.0622 -4.8044 22 7 0.5798 1.2586 -4.9234 23 6 0.1559 1.4761 -6.1323 24 8 0.1630 0.3237 -6.8170 25 6 0.6142 -0.6449 -6.0042 26 6 0.7890 -2.1003 -6.3540 27 6 -0.0331 -2.9587 -5.3905 28 6 0.3104 -2.3414 -7.7871 29 6 2.2671 -2.4783 -6.2395 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7645 -0.1580 2.1388 34 1 1.6065 -1.7217 1.2978 35 1 2.4372 -1.1829 4.7029 36 1 5.1902 -1.3228 0.0123 37 1 3.8387 -2.4807 -0.0878 38 1 3.9333 -1.1881 -2.1680 39 1 3.9154 0.3402 -1.2548 40 1 1.2770 0.8842 -2.4075 41 1 -0.1575 2.4332 -6.5223 42 1 -1.0947 -2.8154 -5.5918 43 1 0.2246 -4.0087 -5.5292 44 1 0.1853 -2.6635 -4.3642 45 1 0.8960 -1.7298 -8.4734 46 1 0.4372 -3.3939 -8.0403 47 1 -0.7427 -2.0720 -7.8686 48 1 2.5836 -2.3964 -5.1998 49 1 2.4075 -3.5035 -6.5824 50 1 2.8631 -1.8045 -6.8550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944047139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:26 Heat of formation + Delta-G solvation = -20.855953 kcal Electronic energy + Delta-G solvation = -30553.008131 eV Core-core repulsion = 26581.483110 eV Total energy + Delta-G solvation = -3971.525021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.49362 -41.06907 -39.31057 -37.80501 -36.07850 -35.83629 -33.90623 -33.49131 -31.39161 -30.54955 -28.21560 -28.19943 -27.56150 -27.13539 -25.23920 -23.87403 -23.58278 -22.51073 -21.68127 -21.10367 -20.35314 -19.24310 -18.60753 -17.78707 -17.37987 -17.04772 -16.72348 -16.27011 -16.03639 -15.64056 -15.54696 -15.43534 -15.09263 -14.87033 -14.65973 -14.56871 -14.31967 -14.19629 -13.57682 -13.22444 -13.14991 -13.06465 -12.90257 -12.87472 -12.63784 -12.62876 -12.55281 -12.47718 -12.28395 -12.05497 -12.00954 -11.98605 -11.82346 -11.73256 -11.59507 -11.49476 -11.22282 -10.82322 -10.55960 -10.06512 -9.81135 -8.64024 -7.87253 -5.38468 0.07841 1.08283 1.48077 1.49721 1.54444 1.56726 2.14222 2.25363 2.51137 3.13398 3.29132 3.44111 3.63505 3.72294 3.79519 3.94472 3.96123 4.03311 4.11831 4.19845 4.34533 4.51752 4.56274 4.57095 4.66855 4.72108 4.74638 4.77663 4.84275 4.87387 4.92407 4.96429 4.98191 5.00737 5.04402 5.09107 5.11919 5.21432 5.25683 5.29792 5.32715 5.41048 5.45908 5.50445 5.65435 5.71334 5.73443 6.34893 6.41692 6.64874 7.15737 7.19591 7.83472 8.38242 9.19147 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002731 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.689175 B =10251.207417 C =10600.396027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.193 3.807 5 N -0.610 5.610 6 C -0.268 4.268 7 H 0.064 0.936 8 C -0.045 4.045 9 N -0.934 5.934 10 Si 0.969 3.031 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.276 1.276 14 C 0.147 3.853 15 C -0.125 4.125 16 C 0.172 3.828 17 H 0.067 0.933 18 N -0.696 5.696 19 C 0.591 3.409 20 O -0.538 6.538 21 C -0.096 4.096 22 N -0.494 5.494 23 C 0.191 3.809 24 O -0.195 6.195 25 C 0.054 3.946 26 C 0.021 3.979 27 C -0.151 4.151 28 C -0.139 4.139 29 C -0.155 4.155 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.059 0.941 34 H -0.004 1.004 35 H 0.251 0.749 36 H 0.057 0.943 37 H 0.012 0.988 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.410 0.590 41 H 0.304 0.696 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 3.437 -24.948 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.067 3.933 5 N -0.333 5.333 6 C -0.398 4.398 7 H 0.082 0.918 8 C -0.241 4.241 9 N -0.579 5.579 10 Si 0.797 3.203 11 H -0.202 1.202 12 H -0.219 1.219 13 H -0.202 1.202 14 C 0.021 3.979 15 C -0.165 4.165 16 C 0.067 3.933 17 H 0.085 0.915 18 N -0.345 5.345 19 C 0.379 3.621 20 O -0.418 6.418 21 C -0.214 4.214 22 N -0.222 5.222 23 C -0.037 4.037 24 O -0.081 6.081 25 C -0.003 4.003 26 C 0.021 3.979 27 C -0.208 4.208 28 C -0.196 4.196 29 C -0.212 4.212 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.014 0.986 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.319 0.681 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.967 3.038 -24.324 25.775 hybrid contribution 0.275 0.409 0.745 0.894 sum -7.692 3.447 -23.579 25.040 Atomic orbital electron populations 1.21650 0.93777 1.01561 1.01875 1.21913 0.96392 0.99768 0.94885 0.91439 1.20540 0.82615 0.95599 0.94527 1.44297 1.02188 1.69876 1.16968 1.19443 1.00394 1.33828 0.86114 0.91801 1.25924 0.99187 0.99524 0.99475 1.70137 1.26261 1.42721 1.18785 0.85324 0.78119 0.78691 0.78164 1.20223 1.21906 1.20209 1.20956 0.96768 0.94002 0.86220 1.22202 0.95279 1.00919 0.98113 1.20726 0.93196 0.96300 0.83045 0.91480 1.45895 1.64506 1.15033 1.09049 1.16981 0.77591 0.85541 0.82016 1.90631 1.51093 1.15896 1.84182 1.21350 1.12700 0.91099 0.96271 1.70722 1.16270 1.14506 1.20735 1.29165 0.97915 0.91206 0.85401 1.84400 1.64107 1.17800 1.41774 1.24042 0.95797 0.92393 0.88109 1.19293 0.98206 0.82332 0.98101 1.22130 0.98413 0.99806 1.00457 1.21897 1.01563 1.03512 0.92650 1.22178 0.92496 1.01998 1.04517 0.93434 0.92441 0.91516 0.92247 0.98607 0.93975 0.92465 0.97041 0.91708 0.92226 0.75387 0.68146 0.92510 0.90437 0.91405 0.91812 0.90030 0.91849 0.90444 0.90157 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.03 71.98 0.65 -3.49 16 2 C -0.11 -4.06 2.46 -10.72 -0.03 -4.09 16 3 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.19 9.36 4.54 86.36 0.39 9.76 16 5 N -0.61 -31.27 2.98 -699.10 -2.08 -33.36 16 6 C -0.27 -14.88 9.57 84.04 0.80 -14.07 16 7 H 0.06 3.46 7.86 -2.91 -0.02 3.44 16 8 C -0.05 -2.54 5.01 84.86 0.43 -2.11 16 9 N -0.93 -55.28 11.17 21.65 0.24 -55.04 16 10 Si 0.97 44.92 29.57 68.60 2.03 46.95 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 C 0.15 6.43 6.52 86.36 0.56 7.00 16 15 C -0.13 -4.60 5.65 30.67 0.17 -4.43 16 16 C 0.17 6.03 1.87 45.02 0.08 6.11 16 17 H 0.07 2.62 7.59 -2.39 -0.02 2.61 16 18 N -0.70 -20.79 4.36 -445.67 -1.94 -22.73 16 19 C 0.59 17.81 7.25 86.66 0.63 18.44 16 20 O -0.54 -17.79 9.78 -4.08 -0.04 -17.83 16 21 C -0.10 -2.47 6.81 40.41 0.28 -2.19 16 22 N -0.49 -10.93 11.07 -305.15 -3.38 -14.30 16 23 C 0.19 2.67 13.19 130.52 1.72 4.39 16 24 O -0.19 -3.37 10.19 0.38 0.00 -3.36 16 25 C 0.05 1.19 5.73 25.19 0.14 1.34 16 26 C 0.02 0.42 0.75 -52.93 -0.04 0.38 16 27 C -0.15 -3.23 8.17 71.98 0.59 -2.64 16 28 C -0.14 -1.94 8.05 71.98 0.58 -1.36 16 29 C -0.16 -3.28 8.24 71.98 0.59 -2.69 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.81 7.36 -2.39 -0.02 1.79 16 33 H 0.06 3.23 6.20 -2.38 -0.01 3.21 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 36 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.41 11.27 8.04 -92.71 -0.75 10.53 16 41 H 0.30 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 43 H 0.08 1.47 8.12 -2.38 -0.02 1.45 16 44 H 0.07 1.87 4.51 -2.39 -0.01 1.86 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 2.13 4.71 -2.39 -0.01 2.12 16 49 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 50 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.27 387.78 2.58 -65.69 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.19 Total: 23.66 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 7.56 Total: 10.34 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -7.16 Total: -125.43 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.27 2.58 -65.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944047139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.831 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds