Wall clock time and date at job start Tue Mar 31 2020 19:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 C 1.53951 * 113.57982 * 252.71810 * 7 6 4 9 9 C 1.52905 * 86.78365 * 220.66208 * 8 7 6 10 10 C 1.52911 * 121.13756 * 150.61427 * 9 8 7 11 11 C 1.53946 * 86.78124 * 100.82080 * 10 9 8 12 12 N 1.46502 * 113.57870 * 139.33216 * 11 10 9 13 13 C 1.36940 * 119.99395 * 107.28195 * 12 11 10 14 14 H 1.07992 * 120.00633 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99665 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00063 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47318 * 89.99340 * 17 15 13 19 19 H 1.48498 * 109.47399 * 209.99732 * 17 15 13 20 20 H 1.48506 * 109.47008 * 329.99575 * 17 15 13 21 21 C 1.52902 * 121.13874 * 259.18026 * 9 8 7 22 22 C 1.52913 * 88.04248 * 24.89592 * 9 8 7 23 23 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 24 24 H 1.08998 * 110.21888 * 298.07522 * 23 2 1 25 25 C 1.54478 * 110.24276 * 60.00626 * 23 2 1 26 26 C 1.54620 * 101.77026 * 93.58222 * 25 23 2 27 27 C 1.51284 * 104.19582 * 24.79378 * 26 25 23 28 28 O 1.21280 * 124.94313 * 163.77948 * 27 26 25 29 29 N 1.34415 * 110.11644 * 343.75254 * 27 26 25 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 34 34 H 1.09000 * 112.82220 * 23.90803 * 7 6 4 35 35 H 1.09008 * 113.65796 * 335.13511 * 8 7 6 36 36 H 1.09001 * 113.66172 * 106.18558 * 8 7 6 37 37 H 1.09005 * 113.66210 * 215.29645 * 10 9 8 38 38 H 1.08998 * 113.65896 * 346.34993 * 10 9 8 39 39 H 1.08999 * 113.58443 * 270.13229 * 11 10 9 40 40 H 0.96993 * 120.00364 * 287.28175 * 12 11 10 41 41 H 0.97001 * 120.00414 * 180.02562 * 16 15 13 42 42 H 1.09001 * 113.66552 * 13.64343 * 21 9 8 43 43 H 1.08992 * 113.66670 * 144.61250 * 21 9 8 44 44 H 1.08999 * 113.66403 * 220.62437 * 22 9 8 45 45 H 1.09004 * 113.65895 * 89.57601 * 22 9 8 46 46 H 1.09005 * 110.96795 * 211.70121 * 25 23 2 47 47 H 1.09003 * 110.97301 * 335.42026 * 25 23 2 48 48 H 1.09002 * 110.49331 * 143.47289 * 26 25 23 49 49 H 1.08998 * 110.48818 * 265.98793 * 26 25 23 50 50 H 0.96994 * 124.35654 * 179.58906 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.1035 -1.7293 4.3958 9 6 1.7376 -1.2178 5.6897 10 6 0.8988 -1.0022 6.9499 11 6 1.4574 -2.3477 7.4472 12 7 1.8026 -2.3488 8.8709 13 6 1.0178 -3.0269 9.7651 14 1 0.1448 -3.5613 9.4207 15 6 1.3444 -3.0275 11.1142 16 7 2.4086 -2.3767 11.5340 17 14 0.2736 -3.9519 12.3341 18 1 0.7669 -5.3462 12.4686 19 1 0.3320 -3.2765 13.6553 20 1 -1.1296 -3.9681 11.8481 21 6 2.6636 -2.1059 6.5214 22 6 2.2846 -0.0336 4.8918 23 6 2.0401 -0.7213 -1.2492 24 1 1.7118 -1.7607 -1.2444 25 6 1.5351 -0.0070 -2.5224 26 6 2.7106 0.9473 -2.8359 27 6 3.9088 0.2833 -2.1940 28 8 5.0659 0.5537 -2.4369 29 7 3.5045 -0.6496 -1.3147 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1492 0.5389 2.5435 34 1 3.1020 -1.5164 3.4657 35 1 0.0957 -1.3513 4.2232 36 1 1.1799 -2.8091 4.2682 37 1 1.2183 -0.1482 7.5473 38 1 -0.1758 -1.0151 6.7676 39 1 0.8506 -3.2056 7.1576 40 1 2.5868 -1.8692 9.1803 41 1 2.6371 -2.3774 12.4767 42 1 2.9987 -3.0008 5.9970 43 1 3.4800 -1.5626 6.9970 44 1 3.3045 0.2413 5.1605 45 1 1.6088 0.8211 4.8587 46 1 1.3829 -0.7183 -3.3343 47 1 0.6215 0.5519 -2.3199 48 1 2.8544 1.0347 -3.9129 49 1 2.5337 1.9282 -2.3948 50 1 4.1035 -1.2041 -0.7908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965210427.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:54 Heat of formation + Delta-G solvation = -27.328922 kcal Electronic energy + Delta-G solvation = -28667.413011 eV Core-core repulsion = 24695.607301 eV Total energy + Delta-G solvation = -3971.805710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27250 -40.43947 -39.26430 -37.09664 -35.89570 -34.08153 -33.27186 -31.97263 -31.59840 -29.53149 -27.24553 -25.83095 -25.49891 -25.22516 -24.08475 -22.74890 -21.38228 -20.82271 -20.41975 -19.98355 -18.10126 -17.80873 -17.35664 -17.00950 -16.73810 -15.98563 -15.89604 -15.28634 -14.95408 -14.78275 -14.43560 -14.23554 -14.05725 -13.97806 -13.75586 -13.48635 -13.38717 -12.87880 -12.70887 -12.59240 -12.46232 -12.37489 -12.18522 -12.06707 -11.77423 -11.69552 -11.39347 -11.33732 -11.01142 -10.91776 -10.73277 -10.40035 -10.18519 -10.11221 -9.98918 -9.82455 -9.74229 -9.47618 -9.37148 -9.15049 -8.86834 -6.95935 -5.78678 -3.07177 2.25934 2.33387 2.86187 3.04672 3.42180 3.47346 3.48988 3.85877 3.96658 4.01585 4.31561 4.45213 4.52350 4.54671 4.58666 4.66646 4.67368 4.73812 4.79645 4.85123 5.01756 5.08439 5.16559 5.29369 5.36234 5.37150 5.42782 5.47182 5.52060 5.61643 5.66455 5.75442 5.88914 5.90352 5.94837 6.05244 6.16376 6.20265 6.34699 6.40321 6.43712 6.50841 6.61654 6.77715 6.90730 7.11919 7.24905 7.69070 7.91631 7.97520 8.40113 9.51095 10.09858 10.44155 11.43778 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034024 B = 0.001768 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.741327 B =15837.404742 C =16187.175449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 H 0.101 0.899 4 C 0.519 3.481 5 O -0.541 6.541 6 N -0.715 5.715 7 C 0.122 3.878 8 C -0.123 4.123 9 C -0.102 4.102 10 C -0.148 4.148 11 C 0.169 3.831 12 N -0.713 5.713 13 C -0.243 4.243 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.129 4.129 22 C -0.131 4.131 23 C 0.150 3.850 24 H 0.097 0.903 25 C -0.133 4.133 26 C -0.158 4.158 27 C 0.514 3.486 28 O -0.538 6.538 29 N -0.717 5.717 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 8.741 -29.643 31.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 H 0.119 0.881 4 C 0.305 3.695 5 O -0.418 6.418 6 N -0.365 5.365 7 C 0.018 3.982 8 C -0.161 4.161 9 C -0.103 4.103 10 C -0.190 4.190 11 C 0.057 3.943 12 N -0.351 5.351 13 C -0.374 4.374 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.168 4.168 22 C -0.169 4.169 23 C 0.044 3.956 24 H 0.115 0.885 25 C -0.170 4.170 26 C -0.198 4.198 27 C 0.300 3.700 28 O -0.415 6.415 29 N -0.372 5.372 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.302 8.110 -29.775 31.313 hybrid contribution -0.397 -0.078 1.278 1.341 sum -5.699 8.033 -28.497 30.151 Atomic orbital electron populations 1.21854 0.91753 1.03524 1.03311 1.21844 0.98242 1.01411 0.93457 0.88099 1.20495 0.79869 0.84426 0.84687 1.90680 1.38027 1.26362 1.86769 1.46079 1.53096 1.31713 1.05635 1.22658 0.98508 0.95080 0.81968 1.23124 0.98136 1.00521 0.94360 1.22073 0.99068 0.96229 0.92917 1.23640 0.98098 1.02401 0.94815 1.21532 0.93609 0.94469 0.84715 1.42418 1.31393 1.60723 1.00599 1.19309 1.05558 1.24325 0.88202 0.91121 1.24765 0.98157 1.00939 0.97136 1.69656 1.27093 1.46592 1.14748 0.86191 0.79749 0.79301 0.80951 1.21708 1.21779 1.20760 1.23215 0.98110 0.98132 0.97352 1.23178 1.01877 0.97313 0.94524 1.21402 0.80389 1.00827 0.93019 0.88451 1.22791 0.98561 0.98816 0.96864 1.22362 0.93842 1.00298 1.03347 1.20962 0.89995 0.79652 0.79413 1.90767 1.20675 1.65453 1.64640 1.46364 1.08004 1.39642 1.43205 0.90680 0.91414 0.91463 0.76628 0.86872 0.89893 0.90985 0.90304 0.92744 0.90820 0.78117 0.93485 0.92102 0.90036 0.90878 0.89912 0.89393 0.88451 0.87968 0.87833 0.74149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 8.85 37.16 0.33 -0.09 16 2 C -0.13 -0.64 2.51 -91.77 -0.23 -0.88 16 3 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.52 4.59 7.02 -10.98 -0.08 4.52 16 5 O -0.54 -6.79 14.41 5.56 0.08 -6.71 16 6 N -0.72 -5.76 5.25 -52.86 -0.28 -6.04 16 7 C 0.12 1.29 4.24 -66.95 -0.28 1.01 16 8 C -0.12 -1.41 7.64 -26.28 -0.20 -1.61 16 9 C -0.10 -1.36 1.11 -154.72 -0.17 -1.53 16 10 C -0.15 -2.45 7.64 -26.28 -0.20 -2.65 16 11 C 0.17 3.29 4.48 -66.95 -0.30 2.99 16 12 N -0.71 -17.78 5.40 -52.47 -0.28 -18.06 16 13 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 17 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.13 -2.09 7.59 -26.28 -0.20 -2.29 16 22 C -0.13 -1.42 7.59 -26.28 -0.20 -1.62 16 23 C 0.15 0.84 2.56 -67.01 -0.17 0.67 16 24 H 0.10 0.59 8.07 -51.93 -0.42 0.17 16 25 C -0.13 -0.39 6.52 -25.10 -0.16 -0.56 16 26 C -0.16 -0.78 6.86 -26.75 -0.18 -0.96 16 27 C 0.51 4.98 8.43 -10.86 -0.09 4.89 16 28 O -0.54 -7.80 18.03 5.56 0.10 -7.70 16 29 N -0.72 -6.14 5.40 -52.76 -0.29 -6.42 16 30 H 0.07 0.07 6.11 -51.93 -0.32 -0.24 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.16 7.56 -51.93 -0.39 -0.23 16 33 H 0.40 2.19 8.14 -40.82 -0.33 1.86 16 34 H 0.11 1.43 7.47 -51.93 -0.39 1.04 16 35 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 40 H 0.38 10.18 7.92 -40.82 -0.32 9.86 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.10 0.08 5.82 -51.93 -0.30 -0.22 16 48 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.42 4.25 8.01 -40.82 -0.33 3.92 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -34.83 400.06 -9.59 -44.42 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.26 Total: 10.07 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.39 Total: -5.47 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.12 Total: -57.90 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.18 Total: -14.41 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.83 -9.59 -44.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965210427.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.090 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds