Wall clock time and date at job start Tue Mar 31 2020 19:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 C 1.53951 * 113.57982 * 252.71810 * 7 6 4 9 9 C 1.52905 * 86.78365 * 220.66208 * 8 7 6 10 10 C 1.52911 * 121.13756 * 150.61427 * 9 8 7 11 11 C 1.53946 * 86.78124 * 100.82080 * 10 9 8 12 12 N 1.46502 * 113.57870 * 139.33216 * 11 10 9 13 13 C 1.36940 * 119.99395 * 107.28195 * 12 11 10 14 14 H 1.07992 * 120.00633 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99665 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00063 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47318 * 89.99340 * 17 15 13 19 19 H 1.48498 * 109.47399 * 209.99732 * 17 15 13 20 20 H 1.48506 * 109.47008 * 329.99575 * 17 15 13 21 21 C 1.52902 * 121.13874 * 259.18026 * 9 8 7 22 22 C 1.52913 * 88.04248 * 24.89592 * 9 8 7 23 23 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 24 24 H 1.08998 * 110.21888 * 298.07522 * 23 2 1 25 25 C 1.54478 * 110.24276 * 60.00626 * 23 2 1 26 26 C 1.54620 * 101.77026 * 93.58222 * 25 23 2 27 27 C 1.51284 * 104.19582 * 24.79378 * 26 25 23 28 28 O 1.21280 * 124.94313 * 163.77948 * 27 26 25 29 29 N 1.34415 * 110.11644 * 343.75254 * 27 26 25 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 34 34 H 1.09000 * 112.82220 * 23.90803 * 7 6 4 35 35 H 1.09008 * 113.65796 * 335.13511 * 8 7 6 36 36 H 1.09001 * 113.66172 * 106.18558 * 8 7 6 37 37 H 1.09005 * 113.66210 * 215.29645 * 10 9 8 38 38 H 1.08998 * 113.65896 * 346.34993 * 10 9 8 39 39 H 1.08999 * 113.58443 * 270.13229 * 11 10 9 40 40 H 0.96993 * 120.00364 * 287.28175 * 12 11 10 41 41 H 0.97001 * 120.00414 * 180.02562 * 16 15 13 42 42 H 1.09001 * 113.66552 * 13.64343 * 21 9 8 43 43 H 1.08992 * 113.66670 * 144.61250 * 21 9 8 44 44 H 1.08999 * 113.66403 * 220.62437 * 22 9 8 45 45 H 1.09004 * 113.65895 * 89.57601 * 22 9 8 46 46 H 1.09005 * 110.96795 * 211.70121 * 25 23 2 47 47 H 1.09003 * 110.97301 * 335.42026 * 25 23 2 48 48 H 1.09002 * 110.49331 * 143.47289 * 26 25 23 49 49 H 1.08998 * 110.48818 * 265.98793 * 26 25 23 50 50 H 0.96994 * 124.35654 * 179.58906 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.1035 -1.7293 4.3958 9 6 1.7376 -1.2178 5.6897 10 6 0.8988 -1.0022 6.9499 11 6 1.4574 -2.3477 7.4472 12 7 1.8026 -2.3488 8.8709 13 6 1.0178 -3.0269 9.7651 14 1 0.1448 -3.5613 9.4207 15 6 1.3444 -3.0275 11.1142 16 7 2.4086 -2.3767 11.5340 17 14 0.2736 -3.9519 12.3341 18 1 0.7669 -5.3462 12.4686 19 1 0.3320 -3.2765 13.6553 20 1 -1.1296 -3.9681 11.8481 21 6 2.6636 -2.1059 6.5214 22 6 2.2846 -0.0336 4.8918 23 6 2.0401 -0.7213 -1.2492 24 1 1.7118 -1.7607 -1.2444 25 6 1.5351 -0.0070 -2.5224 26 6 2.7106 0.9473 -2.8359 27 6 3.9088 0.2833 -2.1940 28 8 5.0659 0.5537 -2.4369 29 7 3.5045 -0.6496 -1.3147 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1492 0.5389 2.5435 34 1 3.1020 -1.5164 3.4657 35 1 0.0957 -1.3513 4.2232 36 1 1.1799 -2.8091 4.2682 37 1 1.2183 -0.1482 7.5473 38 1 -0.1758 -1.0151 6.7676 39 1 0.8506 -3.2056 7.1576 40 1 2.5868 -1.8692 9.1803 41 1 2.6371 -2.3774 12.4767 42 1 2.9987 -3.0008 5.9970 43 1 3.4800 -1.5626 6.9970 44 1 3.3045 0.2413 5.1605 45 1 1.6088 0.8211 4.8587 46 1 1.3829 -0.7183 -3.3343 47 1 0.6215 0.5519 -2.3199 48 1 2.8544 1.0347 -3.9129 49 1 2.5337 1.9282 -2.3948 50 1 4.1035 -1.2041 -0.7908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965210427.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:53 Heat of formation + Delta-G solvation = -53.030011 kcal Electronic energy + Delta-G solvation = -28668.527494 eV Core-core repulsion = 24695.607301 eV Total energy + Delta-G solvation = -3972.920193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94588 -41.40143 -40.12980 -37.86686 -37.13714 -35.29750 -34.35577 -33.07924 -32.05826 -31.31929 -27.67066 -26.77462 -26.68546 -26.21935 -25.63793 -23.74111 -22.13665 -21.48347 -21.38301 -20.85044 -19.46136 -18.72346 -18.53308 -17.98285 -17.49373 -16.92633 -16.57406 -16.55703 -16.05990 -15.93348 -15.60344 -15.32330 -15.07135 -14.83417 -14.50237 -14.39655 -14.08659 -13.72116 -13.66082 -13.61029 -13.49152 -13.13409 -12.99646 -12.94910 -12.83436 -12.68438 -12.42287 -12.32175 -12.26892 -12.17279 -12.05181 -11.90179 -11.71497 -11.36889 -11.06479 -10.92408 -10.87421 -10.81501 -10.59246 -10.11710 -9.96289 -8.97696 -7.95075 -5.23262 1.46602 1.48400 1.56469 1.56758 1.66321 2.21926 2.45129 2.56072 3.36051 3.39674 3.50165 3.52748 3.57946 3.65394 3.69556 3.82978 3.93357 4.00418 4.12753 4.25364 4.28006 4.32835 4.35685 4.44077 4.52753 4.60832 4.75968 4.79820 4.81954 4.84732 4.92961 4.93716 4.99385 5.02533 5.05107 5.08601 5.14444 5.16221 5.22720 5.27930 5.44063 5.46750 5.56108 5.64258 5.70780 5.85037 6.11582 6.27302 6.61266 7.22019 7.30839 7.32804 8.10837 8.33564 9.28316 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034024 B = 0.001768 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.741327 B =15837.404742 C =16187.175449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 H 0.116 0.884 4 C 0.511 3.489 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.131 3.869 8 C -0.115 4.115 9 C -0.090 4.090 10 C -0.136 4.136 11 C 0.146 3.854 12 N -0.729 5.729 13 C -0.243 4.243 14 H 0.076 0.924 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.289 1.289 19 H -0.296 1.296 20 H -0.268 1.268 21 C -0.125 4.125 22 C -0.119 4.119 23 C 0.142 3.858 24 H 0.090 0.910 25 C -0.117 4.117 26 C -0.149 4.149 27 C 0.500 3.500 28 O -0.600 6.600 29 N -0.721 5.721 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.131 0.869 48 H 0.111 0.889 49 H 0.124 0.876 50 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 10.155 -31.845 34.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 H 0.134 0.866 4 C 0.299 3.701 5 O -0.465 6.465 6 N -0.355 5.355 7 C 0.025 3.975 8 C -0.154 4.154 9 C -0.092 4.092 10 C -0.177 4.177 11 C 0.037 3.963 12 N -0.367 5.367 13 C -0.375 4.375 14 H 0.094 0.906 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.802 3.198 18 H -0.216 1.216 19 H -0.222 1.222 20 H -0.193 1.193 21 C -0.164 4.164 22 C -0.157 4.157 23 C 0.037 3.963 24 H 0.109 0.891 25 C -0.155 4.155 26 C -0.189 4.189 27 C 0.288 3.712 28 O -0.482 6.482 29 N -0.372 5.372 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.149 0.851 48 H 0.130 0.870 49 H 0.142 0.858 50 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.557 9.539 -32.033 34.501 hybrid contribution 0.602 -0.585 1.916 2.092 sum -7.955 8.954 -30.116 32.411 Atomic orbital electron populations 1.21906 0.89301 1.03649 1.05267 1.21847 0.99972 1.01221 0.90785 0.86579 1.21280 0.79014 0.84000 0.85798 1.90674 1.39911 1.28480 1.87389 1.45922 1.52974 1.31943 1.04697 1.22271 0.97396 0.94809 0.83007 1.23137 0.99346 1.00141 0.92732 1.21903 0.97473 0.97243 0.92548 1.23381 0.99056 0.99435 0.95837 1.21924 0.95752 0.96098 0.82517 1.42614 1.30885 1.60666 1.02543 1.19713 1.05504 1.23379 0.88902 0.90570 1.25588 0.99798 1.02642 0.99059 1.69817 1.29055 1.48680 1.14611 0.85138 0.78682 0.77689 0.78250 1.21590 1.22235 1.19268 1.23085 0.97187 0.99002 0.97132 1.23153 1.02135 0.97077 0.93371 1.21671 0.78531 1.01210 0.94903 0.89144 1.22861 0.98755 0.98447 0.95406 1.22413 0.91872 1.01080 1.03537 1.21896 0.90507 0.79554 0.79194 1.90722 1.23461 1.67409 1.66602 1.46614 1.09471 1.38820 1.42345 0.87840 0.92210 0.90464 0.74653 0.89243 0.87757 0.92033 0.91673 0.91642 0.91223 0.79559 0.94083 0.91840 0.91014 0.91270 0.87352 0.88424 0.85073 0.87031 0.85784 0.75771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.16 8.85 71.98 0.64 0.47 16 2 C -0.12 -0.82 2.51 -11.54 -0.03 -0.85 16 3 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 4 C 0.51 8.17 7.02 87.66 0.62 8.78 16 5 O -0.58 -14.63 14.41 -3.02 -0.04 -14.67 16 6 N -0.70 -9.52 5.25 -439.53 -2.31 -11.83 16 7 C 0.13 2.54 4.24 45.63 0.19 2.74 16 8 C -0.12 -2.40 7.64 30.88 0.24 -2.16 16 9 C -0.09 -2.30 1.11 -52.32 -0.06 -2.35 16 10 C -0.14 -4.36 7.64 30.88 0.24 -4.12 16 11 C 0.15 5.75 4.48 45.63 0.20 5.95 16 12 N -0.73 -37.21 5.40 -319.92 -1.73 -38.94 16 13 C -0.24 -13.60 9.97 84.03 0.84 -12.76 16 14 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 15 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 16 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 17 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C -0.13 -4.09 7.59 30.88 0.23 -3.85 16 22 C -0.12 -2.33 7.59 30.89 0.23 -2.10 16 23 C 0.14 1.29 2.56 45.44 0.12 1.40 16 24 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 25 C -0.12 -0.24 6.52 31.65 0.21 -0.03 16 26 C -0.15 -1.05 6.86 30.59 0.21 -0.84 16 27 C 0.50 9.57 8.43 87.90 0.74 10.32 16 28 O -0.60 -18.18 18.03 -3.03 -0.05 -18.23 16 29 N -0.72 -12.23 5.40 -439.43 -2.37 -14.61 16 30 H 0.10 -0.43 6.11 -2.39 -0.01 -0.44 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.08 -0.02 7.56 -2.39 -0.02 -0.03 16 33 H 0.42 2.91 8.14 -92.70 -0.75 2.16 16 34 H 0.09 2.25 7.47 -2.39 -0.02 2.23 16 35 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.76 8.10 -2.39 -0.02 2.74 16 40 H 0.37 20.46 7.92 -92.71 -0.73 19.73 16 41 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.11 1.63 8.12 -2.39 -0.02 1.61 16 46 H 0.10 0.08 8.14 -2.38 -0.02 0.06 16 47 H 0.13 -0.57 5.82 -2.39 -0.01 -0.58 16 48 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.12 0.40 8.14 -2.39 -0.02 0.39 16 50 H 0.40 8.75 8.01 -92.71 -0.74 8.00 16 Total: -1.00 -80.69 400.06 -0.38 -81.06 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -1.26 Total: 32.08 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.08 Total: -3.51 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -6.13 Total: -125.07 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.10 Total: -32.91 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -80.69 -0.38 -81.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965210427.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.032 kcal (2) G-P(sol) polarization free energy of solvation -80.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds