Wall clock time and date at job start Tue Mar 31 2020 19:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47154 * 2 1 4 4 C 1.50703 * 109.47138 * 240.00614 * 2 1 3 5 5 O 1.21281 * 120.00103 * 240.00245 * 4 2 1 6 6 N 1.34775 * 120.00190 * 59.99137 * 4 2 1 7 7 C 1.46501 * 120.00113 * 180.02562 * 6 4 2 8 8 C 1.53947 * 113.57978 * 155.00198 * 7 6 4 9 9 C 1.52912 * 86.78152 * 89.86949 * 8 7 6 10 10 C 1.52915 * 121.13834 * 150.61563 * 9 8 7 11 11 C 1.53950 * 86.78247 * 100.82010 * 10 9 8 12 12 N 1.46499 * 113.57890 * 139.33842 * 11 10 9 13 13 C 1.36939 * 119.99933 * 155.27808 * 12 11 10 14 14 H 1.08001 * 119.99700 * 359.72658 * 13 12 11 15 15 C 1.38810 * 120.00095 * 179.71972 * 13 12 11 16 16 N 1.31612 * 120.00054 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99751 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47517 * 89.99708 * 17 15 13 19 19 H 1.48502 * 109.46736 * 209.99481 * 17 15 13 20 20 H 1.48496 * 109.47375 * 329.99177 * 17 15 13 21 21 C 1.52908 * 121.14028 * 259.17927 * 9 8 7 22 22 C 1.52910 * 88.04319 * 24.90083 * 9 8 7 23 23 C 1.52991 * 109.47408 * 120.00345 * 2 1 3 24 24 H 1.09009 * 110.21853 * 180.47800 * 23 2 1 25 25 C 1.54476 * 110.24700 * 302.49402 * 23 2 1 26 26 C 1.54627 * 101.76723 * 144.41490 * 25 23 2 27 27 C 1.51284 * 104.19266 * 335.20793 * 26 25 23 28 28 O 1.21288 * 124.93786 * 196.23191 * 27 26 25 29 29 N 1.34412 * 110.11904 * 16.25069 * 27 26 25 30 30 H 1.09004 * 109.46555 * 299.99839 * 1 2 3 31 31 H 1.09001 * 109.47396 * 59.99281 * 1 2 3 32 32 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 33 33 H 0.97002 * 120.00268 * 0.02562 * 6 4 2 34 34 H 1.08997 * 112.87449 * 23.86133 * 7 6 4 35 35 H 1.08994 * 113.66362 * 335.40106 * 8 7 6 36 36 H 1.09001 * 113.66063 * 204.33751 * 8 7 6 37 37 H 1.09006 * 113.65829 * 346.35299 * 10 9 8 38 38 H 1.08999 * 113.66814 * 215.29512 * 10 9 8 39 39 H 1.09007 * 113.58169 * 270.05655 * 11 10 9 40 40 H 0.97001 * 119.99790 * 334.99782 * 12 11 10 41 41 H 0.96998 * 120.00381 * 180.02562 * 16 15 13 42 42 H 1.08999 * 113.66354 * 144.70624 * 21 9 8 43 43 H 1.09002 * 113.65679 * 13.64956 * 21 9 8 44 44 H 1.08998 * 113.66690 * 89.56961 * 22 9 8 45 45 H 1.08997 * 113.66168 * 220.63334 * 22 9 8 46 46 H 1.09000 * 110.97642 * 262.53602 * 25 23 2 47 47 H 1.09008 * 110.96668 * 26.29800 * 25 23 2 48 48 H 1.08999 * 110.49083 * 216.52769 * 26 25 23 49 49 H 1.09006 * 110.59893 * 93.93946 * 26 25 23 50 50 H 0.96995 * 124.35136 * 180.43269 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7066 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6509 8 6 1.3099 -0.7225 -4.8918 9 6 2.1831 0.4960 -5.1935 10 6 2.4100 0.9702 -6.6294 11 6 1.3517 2.0521 -6.3475 12 7 1.6890 3.3623 -6.9094 13 6 0.6959 4.2603 -7.1967 14 1 -0.3363 4.0009 -7.0131 15 6 1.0158 5.5040 -7.7237 16 7 0.0613 6.3669 -8.0003 17 14 2.8011 5.9523 -8.0417 18 1 3.1751 5.5479 -9.4208 19 1 2.9774 7.4191 -7.8910 20 1 3.6701 5.2466 -7.0661 21 6 1.7100 1.9106 -4.8568 22 6 3.3024 -0.1741 -4.3959 23 6 2.0400 -0.7213 1.2491 24 1 3.1300 -0.7210 1.2656 25 6 1.4842 -0.0445 2.5216 26 6 1.2711 -1.2576 3.4565 27 6 1.0987 -2.4274 2.5128 28 8 0.6371 -3.5059 2.8206 29 7 1.5320 -2.0977 1.2839 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1492 0.5390 -2.5436 34 1 2.4367 -1.9873 -3.4665 35 1 0.2763 -0.4718 -4.6536 36 1 1.3947 -1.5160 -5.6344 37 1 2.1039 0.2447 -7.3832 38 1 3.4086 1.3702 -6.8054 39 1 0.3347 1.7395 -6.5843 40 1 2.6161 3.5953 -7.0742 41 1 0.2848 7.2358 -8.3689 42 1 2.5118 2.5750 -4.5346 43 1 0.8446 1.9364 -4.1946 44 1 3.9471 -0.8134 -4.9990 45 1 3.8603 0.5147 -3.7615 46 1 2.2108 0.6500 2.9433 47 1 0.5399 0.4592 2.3148 48 1 0.3749 -1.1202 4.0615 49 1 2.1419 -1.4074 4.0948 50 1 1.5112 -2.6929 0.5183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965210430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:00 Heat of formation + Delta-G solvation = -19.675178 kcal Electronic energy + Delta-G solvation = -29232.980878 eV Core-core repulsion = 25261.507059 eV Total energy + Delta-G solvation = -3971.473819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31858 -40.59020 -39.24193 -37.05396 -36.00025 -33.99069 -33.18639 -31.95107 -31.61093 -30.22458 -27.40794 -25.94446 -25.49651 -25.20435 -24.12937 -22.50499 -21.54605 -20.89892 -20.28102 -20.02788 -18.18183 -17.42464 -17.34990 -17.26546 -17.09284 -16.24342 -15.49692 -15.28165 -15.12385 -14.93234 -14.62200 -14.26758 -14.11223 -13.89664 -13.73757 -13.71959 -13.04437 -13.01215 -12.73623 -12.70705 -12.64553 -12.35764 -12.28603 -11.99203 -11.86564 -11.66527 -11.49232 -11.30100 -11.27607 -11.06427 -10.88679 -10.29447 -10.15958 -10.11786 -10.07936 -9.87358 -9.75699 -9.51876 -9.37179 -9.18714 -8.95158 -7.32953 -5.84237 -3.19833 2.29739 2.34914 2.82418 3.11559 3.31530 3.34690 3.40064 3.88069 3.96679 4.17138 4.35430 4.45590 4.48756 4.52282 4.53468 4.62411 4.64365 4.70776 4.76160 4.90552 5.13856 5.16952 5.19068 5.26260 5.31300 5.33548 5.46437 5.52008 5.54802 5.55795 5.64519 5.69832 5.71071 5.75949 5.79486 5.88677 6.00631 6.05378 6.13148 6.20551 6.32593 6.44861 6.56332 6.71326 6.82609 6.91892 7.24932 7.91438 7.92128 8.02594 8.35630 9.13430 9.86261 10.06142 11.33964 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.002218 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.332126 B =12622.812875 C =13337.177406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 H 0.115 0.885 4 C 0.520 3.480 5 O -0.543 6.543 6 N -0.703 5.703 7 C 0.121 3.879 8 C -0.121 4.121 9 C -0.106 4.106 10 C -0.142 4.142 11 C 0.175 3.825 12 N -0.738 5.738 13 C -0.248 4.248 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.141 4.141 22 C -0.136 4.136 23 C 0.151 3.849 24 H 0.089 0.911 25 C -0.135 4.135 26 C -0.156 4.156 27 C 0.515 3.485 28 O -0.542 6.542 29 N -0.713 5.713 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 -13.685 19.108 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 H 0.133 0.867 4 C 0.306 3.694 5 O -0.421 6.421 6 N -0.354 5.354 7 C 0.015 3.985 8 C -0.159 4.159 9 C -0.106 4.106 10 C -0.181 4.181 11 C 0.064 3.936 12 N -0.377 5.377 13 C -0.378 4.378 14 H 0.108 0.892 15 C -0.191 4.191 16 N -0.580 5.580 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.181 4.181 22 C -0.175 4.175 23 C 0.045 3.955 24 H 0.107 0.893 25 C -0.173 4.173 26 C -0.196 4.196 27 C 0.301 3.699 28 O -0.419 6.419 29 N -0.370 5.370 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.240 0.760 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.196 -14.730 19.364 24.689 hybrid contribution 1.148 0.794 -0.809 1.614 sum 5.344 -13.936 18.555 23.813 Atomic orbital electron populations 1.21871 0.92099 1.03324 1.03347 1.21712 0.98585 1.01554 0.92686 0.86696 1.20538 0.79727 0.84509 0.84631 1.90692 1.38107 1.26523 1.86766 1.45736 1.52913 1.31749 1.04960 1.21879 0.95818 0.96911 0.83864 1.23036 0.98567 0.97863 0.96405 1.22361 0.96378 0.94476 0.97428 1.23301 1.00732 0.99334 0.94737 1.21514 0.96574 0.85023 0.90522 1.42778 1.05557 1.13388 1.75988 1.19127 0.89468 0.93917 1.35297 0.89177 1.24698 0.96853 0.96547 1.01032 1.69696 1.30753 1.07862 1.49678 0.86555 0.86177 0.77574 0.78220 1.21043 1.21714 1.20364 1.23568 1.00210 0.92828 1.01536 1.23226 0.96436 0.99411 0.98423 1.21429 0.99071 0.81423 0.93563 0.89289 1.22853 1.03306 0.97359 0.93754 1.22349 1.05199 0.93691 0.98407 1.20893 0.76360 0.88691 0.83912 1.90760 1.45872 1.25766 1.79510 1.46362 1.62955 1.15402 1.12284 0.90674 0.91449 0.91771 0.75991 0.88301 0.90731 0.88662 0.91816 0.90492 0.89964 0.80495 0.93005 0.90279 0.92640 0.89396 0.91315 0.88821 0.89017 0.88025 0.87804 0.74351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.65 37.16 0.32 -0.49 16 2 C -0.12 -0.74 2.68 -91.78 -0.25 -0.99 16 3 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.52 4.77 6.93 -10.98 -0.08 4.70 16 5 O -0.54 -6.70 14.14 5.56 0.08 -6.63 16 6 N -0.70 -6.19 5.15 -52.85 -0.27 -6.46 16 7 C 0.12 1.19 4.32 -66.95 -0.29 0.90 16 8 C -0.12 -1.19 7.59 -26.28 -0.20 -1.39 16 9 C -0.11 -1.24 1.02 -154.71 -0.16 -1.40 16 10 C -0.14 -2.01 7.59 -26.28 -0.20 -2.21 16 11 C 0.17 3.06 4.48 -66.95 -0.30 2.76 16 12 N -0.74 -16.54 5.20 -52.47 -0.27 -16.82 16 13 C -0.25 -6.73 10.45 -15.06 -0.16 -6.88 16 14 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 15 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 16 N -0.93 -28.56 13.97 55.49 0.78 -27.79 16 17 Si 0.88 21.49 27.74 -169.99 -4.71 16.78 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 21 C -0.14 -2.00 7.18 -26.28 -0.19 -2.19 16 22 C -0.14 -1.46 7.64 -26.28 -0.20 -1.66 16 23 C 0.15 0.95 2.79 -67.02 -0.19 0.77 16 24 H 0.09 0.60 8.12 -51.92 -0.42 0.18 16 25 C -0.14 -0.53 6.51 -25.10 -0.16 -0.69 16 26 C -0.16 -0.90 6.86 -26.74 -0.18 -1.08 16 27 C 0.52 5.25 8.43 -10.86 -0.09 5.16 16 28 O -0.54 -8.01 18.03 5.55 0.10 -7.91 16 29 N -0.71 -6.38 4.77 -52.77 -0.25 -6.63 16 30 H 0.07 0.30 5.99 -51.93 -0.31 -0.01 16 31 H 0.07 0.34 7.56 -51.93 -0.39 -0.05 16 32 H 0.06 0.45 7.61 -51.93 -0.39 0.05 16 33 H 0.40 3.16 6.98 -40.82 -0.29 2.87 16 34 H 0.10 1.06 7.47 -51.93 -0.39 0.68 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.13 8.12 -51.93 -0.42 0.70 16 39 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 40 H 0.36 8.05 5.78 -40.82 -0.24 7.82 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 0.72 7.47 -51.93 -0.39 0.33 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.09 0.28 5.66 -51.92 -0.29 -0.01 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.42 4.35 7.42 -40.82 -0.30 4.05 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -34.40 392.41 -9.13 -43.54 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.07 Total: 10.67 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.41 Total: -4.66 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.02 Total: -57.70 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.18 Total: -14.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.40 -9.13 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965210430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.863 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds