Wall clock time and date at job start Tue Mar 31 2020 18:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47586 * 2 1 4 4 N 1.46498 * 109.47015 * 120.00103 * 2 1 3 5 5 C 1.34780 * 120.00168 * 274.99782 * 4 2 1 6 6 O 1.21273 * 119.99549 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99934 * 179.97438 * 5 4 2 8 8 H 1.08996 * 109.20255 * 304.34612 * 7 5 4 9 9 C 1.53284 * 109.20545 * 63.65720 * 7 5 4 10 10 N 1.46793 * 108.50066 * 180.46674 * 9 7 5 11 11 C 1.49424 * 112.09638 * 193.76379 * 10 9 7 12 12 C 1.57024 * 99.32261 * 113.44889 * 11 10 9 13 13 C 1.56482 * 107.13245 * 41.34315 * 12 11 10 14 14 C 1.49511 * 107.60872 * 302.19400 * 10 9 7 15 15 C 1.54374 * 104.42673 * 288.57974 * 14 10 9 16 16 C 1.50169 * 114.92506 * 57.53243 * 14 10 9 17 17 O 1.42795 * 109.20052 * 185.00254 * 7 5 4 18 18 C 1.53003 * 109.47097 * 239.99631 * 2 1 3 19 19 C 1.53944 * 113.73972 * 158.74098 * 18 2 1 20 20 N 1.47816 * 86.03717 * 222.08676 * 19 18 2 21 21 C 1.36932 * 134.45754 * 204.64637 * 20 19 18 22 22 H 1.08001 * 120.00321 * 179.86797 * 21 20 19 23 23 C 1.38820 * 119.99968 * 359.86854 * 21 20 19 24 24 N 1.31622 * 119.99842 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99770 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47052 * 90.00203 * 25 23 21 27 27 H 1.48501 * 109.46677 * 209.99885 * 25 23 21 28 28 H 1.48498 * 109.47241 * 330.00023 * 25 23 21 29 29 C 1.47582 * 91.04935 * 24.55302 * 20 19 18 30 30 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47132 * 300.00583 * 1 2 3 32 32 H 1.09008 * 109.46976 * 59.99777 * 1 2 3 33 33 H 0.97003 * 120.00096 * 94.99124 * 4 2 1 34 34 H 1.09002 * 109.63059 * 300.16827 * 9 7 5 35 35 H 1.08998 * 109.63071 * 60.76489 * 9 7 5 36 36 H 1.08998 * 111.42668 * 230.97405 * 11 10 9 37 37 H 1.08998 * 111.43214 * 355.87012 * 11 10 9 38 38 H 1.09002 * 118.35114 * 180.88459 * 12 11 10 39 39 H 1.08997 * 114.70168 * 55.81807 * 13 12 11 40 40 H 1.09005 * 114.69803 * 190.06629 * 13 12 11 41 41 H 1.09001 * 114.71730 * 179.97438 * 15 14 10 42 42 H 1.08998 * 114.77363 * 45.65689 * 15 14 10 43 43 H 1.09001 * 109.70170 * 187.22146 * 16 14 10 44 44 H 1.08998 * 109.69815 * 66.61879 * 16 14 10 45 45 H 1.09002 * 112.94522 * 290.33854 * 18 2 1 46 46 H 1.08995 * 113.77098 * 336.35595 * 19 18 2 47 47 H 1.09005 * 113.76257 * 107.74913 * 19 18 2 48 48 H 0.96998 * 119.99297 * 180.02562 * 24 23 21 49 49 H 1.09000 * 113.76499 * 221.15005 * 29 20 19 50 50 H 1.08997 * 113.87424 * 89.76654 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8591 1.1585 2.4115 7 6 2.6488 -0.7289 3.5877 8 1 2.0174 -1.5955 3.7838 9 6 4.0879 -1.1988 3.3471 10 7 4.5569 -1.8979 4.5497 11 6 6.0372 -2.1013 4.5402 12 6 6.4296 -1.1706 5.7425 13 6 5.3631 -1.3940 6.8656 14 6 4.4453 -0.9470 5.6980 15 6 5.5641 0.0875 5.4509 16 6 3.0667 -0.4012 5.9361 17 8 2.5847 0.1608 4.7028 18 6 2.0400 -0.7213 -1.2492 19 6 3.4848 -0.3522 -1.6316 20 7 2.9978 -0.3178 -3.0269 21 6 3.5875 -0.4758 -4.2526 22 1 2.9928 -0.4039 -5.1513 23 6 4.9497 -0.7286 -4.3401 24 7 5.6743 -0.8168 -3.2449 25 14 5.7538 -0.9449 -6.0122 26 1 6.2186 0.3739 -6.5123 27 1 6.9136 -1.8641 -5.8884 28 1 4.7686 -1.5164 -6.9651 29 6 1.6214 -0.0472 -2.5684 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 4.1137 -1.8782 2.4951 35 1 4.7266 -0.3374 3.1518 36 1 6.2975 -3.1408 4.7399 37 1 6.4808 -1.7556 3.6066 38 1 7.4840 -1.0780 6.0027 39 1 5.2487 -2.4296 7.1856 40 1 5.4157 -0.6842 7.6912 41 1 5.6333 0.8728 6.2038 42 1 5.6269 0.4567 4.4273 43 1 3.1053 0.3730 6.7024 44 1 2.4040 -1.2045 6.2576 45 1 1.8527 -1.7949 -1.2262 46 1 3.8048 0.6189 -1.2539 47 1 4.2070 -1.1449 -1.4365 48 1 6.6262 -0.9930 -3.3062 49 1 0.8587 -0.5969 -3.1200 50 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970190070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:26 Heat of formation + Delta-G solvation = 55.646537 kcal Electronic energy + Delta-G solvation = -30197.663219 eV Core-core repulsion = 26229.455595 eV Total energy + Delta-G solvation = -3968.207625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33552 -39.87714 -38.27929 -37.28334 -34.78623 -33.93691 -32.21885 -30.88901 -29.70619 -29.02720 -27.52064 -25.87399 -25.09798 -24.64552 -24.08028 -23.56952 -21.43238 -20.63528 -20.30531 -19.30513 -18.94305 -17.33439 -17.06095 -16.72161 -16.14509 -16.01595 -15.63070 -15.26596 -14.87878 -14.72550 -14.67278 -14.00319 -13.88109 -13.70105 -13.46151 -13.28902 -13.04726 -12.81734 -12.66579 -12.42382 -12.14647 -12.06937 -11.68245 -11.65637 -11.35000 -11.30959 -11.29433 -11.05345 -10.93693 -10.90450 -10.71257 -10.54303 -10.37024 -9.96221 -9.80656 -9.75972 -9.58685 -9.39274 -8.90243 -8.81557 -8.79756 -6.87814 -5.77340 -3.09186 2.66363 2.80531 3.36245 3.38499 3.43351 3.45105 3.73415 3.92195 4.04597 4.16651 4.34462 4.44702 4.57011 4.72310 4.73801 4.84115 5.00698 5.10910 5.16586 5.22130 5.27107 5.30203 5.32326 5.36370 5.39029 5.42876 5.50209 5.53571 5.55923 5.61290 5.66389 5.73950 5.79499 5.81007 5.94928 6.03498 6.17997 6.24832 6.36135 6.41678 6.51129 6.58060 6.65121 6.74456 6.86281 7.22239 7.35814 7.54769 7.64662 7.97619 8.34663 9.04286 9.70617 10.59958 11.39793 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.002951 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.936018 B = 9484.913783 C =11176.275255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.087 0.913 4 N -0.714 5.714 5 C 0.521 3.479 6 O -0.521 6.521 7 C 0.079 3.921 8 H 0.089 0.911 9 C 0.008 3.992 10 N -0.470 5.470 11 C 0.033 3.967 12 C -0.143 4.143 13 C -0.107 4.107 14 C 0.007 3.993 15 C -0.174 4.174 16 C 0.094 3.906 17 O -0.352 6.352 18 C -0.146 4.146 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.130 3.870 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.253 0.747 49 H 0.044 0.956 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -3.816 21.730 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.366 5.366 5 C 0.304 3.696 6 O -0.395 6.395 7 C 0.017 3.983 8 H 0.107 0.893 9 C -0.121 4.121 10 N -0.194 5.194 11 C -0.094 4.094 12 C -0.161 4.161 13 C -0.145 4.145 14 C -0.083 4.083 15 C -0.212 4.212 16 C 0.017 3.983 17 O -0.269 6.269 18 C -0.166 4.166 19 C 0.046 3.954 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.803 -3.373 21.506 22.098 hybrid contribution 1.335 0.074 -1.100 1.731 sum -2.468 -3.299 20.406 20.818 Atomic orbital electron populations 1.22136 0.95608 1.01802 1.02162 1.21111 0.93530 0.97563 0.83027 0.89448 1.46015 1.67187 1.14117 1.09320 1.19954 0.78352 0.87340 0.83908 1.90715 1.48853 1.15485 1.84479 1.21872 0.96313 0.92923 0.87159 0.89289 1.23090 0.95362 0.99094 0.94541 1.67226 1.15030 1.35121 1.02031 1.23874 0.87528 1.00481 0.97540 1.24853 0.98652 0.96546 0.96086 1.23670 0.94481 1.02127 0.94215 1.23911 0.95248 0.93966 0.95172 1.24492 0.97374 0.96455 1.02884 1.21838 0.91306 0.98513 0.86688 1.88214 1.84245 1.38465 1.16002 1.23824 1.00897 0.99680 0.92229 1.22292 0.91366 0.98449 0.83341 1.46000 1.03307 1.82574 1.02000 1.19034 0.91454 1.41476 0.82987 0.90277 1.24777 0.96041 1.02425 0.97260 1.69819 1.06023 1.55319 1.25745 0.86129 0.79005 0.77545 0.83149 1.21643 1.21645 1.20622 1.22489 0.89647 0.96644 0.90855 0.92666 0.92732 0.91371 0.76612 0.88120 0.91931 0.88797 0.90535 0.87415 0.90287 0.88214 0.88787 0.90743 0.87681 0.91855 0.89337 0.95685 0.91071 0.93733 0.93731 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.31 37.16 0.35 -1.78 16 2 C 0.15 2.34 2.38 -67.93 -0.16 2.18 16 3 H 0.09 1.58 7.41 -51.93 -0.39 1.19 16 4 N -0.71 -9.64 5.00 -53.81 -0.27 -9.91 16 5 C 0.52 7.83 7.14 -10.98 -0.08 7.75 16 6 O -0.52 -10.03 16.15 -14.45 -0.23 -10.26 16 7 C 0.08 0.98 3.13 -27.74 -0.09 0.89 16 8 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 9 C 0.01 0.09 4.66 -3.74 -0.02 0.08 16 10 N -0.47 -4.84 6.02 -226.56 -1.36 -6.20 16 11 C 0.03 0.30 7.01 -0.24 0.00 0.30 16 12 C -0.14 -1.13 6.33 -98.02 -0.62 -1.75 16 13 C -0.11 -0.76 7.97 -26.41 -0.21 -0.97 16 14 C 0.01 0.07 1.62 -142.49 -0.23 -0.16 16 15 C -0.17 -1.65 7.02 -27.36 -0.19 -1.84 16 16 C 0.09 0.91 6.75 35.75 0.24 1.15 16 17 O -0.35 -4.76 9.99 -55.25 -0.55 -5.31 16 18 C -0.15 -2.57 3.47 -89.69 -0.31 -2.88 16 19 C 0.17 3.93 7.08 -2.84 -0.02 3.91 16 20 N -0.61 -15.65 3.70 -177.68 -0.66 -16.31 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -27.22 11.39 55.49 0.63 -26.58 16 25 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.13 2.60 7.64 -2.96 -0.02 2.58 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.88 7.52 -51.92 -0.39 0.49 16 33 H 0.40 4.45 8.27 -40.82 -0.34 4.11 16 34 H 0.10 1.07 7.79 -51.93 -0.40 0.67 16 35 H 0.06 0.82 5.97 -51.93 -0.31 0.51 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.74 7.73 -51.93 -0.40 0.34 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.54 7.88 -51.93 -0.41 0.13 16 41 H 0.09 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.07 0.87 6.08 -51.93 -0.32 0.56 16 43 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.03 0.62 7.99 -51.93 -0.41 0.20 16 47 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -34.09 388.18 -11.59 -45.68 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.34 Total: 3.20 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.62 Total: 2.71 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -1.66 Total: -59.00 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.79 Total: -15.57 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.09 -11.59 -45.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970190070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.322 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds