Wall clock time and date at job start Tue Mar 31 2020 18:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47586 * 2 1 4 4 N 1.46498 * 109.47015 * 120.00103 * 2 1 3 5 5 C 1.34780 * 120.00168 * 274.99782 * 4 2 1 6 6 O 1.21273 * 119.99549 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99934 * 179.97438 * 5 4 2 8 8 H 1.08996 * 109.20255 * 304.34612 * 7 5 4 9 9 C 1.53284 * 109.20545 * 63.65720 * 7 5 4 10 10 N 1.46793 * 108.50066 * 180.46674 * 9 7 5 11 11 C 1.49424 * 112.09638 * 193.76379 * 10 9 7 12 12 C 1.57024 * 99.32261 * 113.44889 * 11 10 9 13 13 C 1.56482 * 107.13245 * 41.34315 * 12 11 10 14 14 C 1.49511 * 107.60872 * 302.19400 * 10 9 7 15 15 C 1.54374 * 104.42673 * 288.57974 * 14 10 9 16 16 C 1.50169 * 114.92506 * 57.53243 * 14 10 9 17 17 O 1.42795 * 109.20052 * 185.00254 * 7 5 4 18 18 C 1.53003 * 109.47097 * 239.99631 * 2 1 3 19 19 C 1.53944 * 113.73972 * 158.74098 * 18 2 1 20 20 N 1.47816 * 86.03717 * 222.08676 * 19 18 2 21 21 C 1.36932 * 134.45754 * 204.64637 * 20 19 18 22 22 H 1.08001 * 120.00321 * 179.86797 * 21 20 19 23 23 C 1.38820 * 119.99968 * 359.86854 * 21 20 19 24 24 N 1.31622 * 119.99842 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99770 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47052 * 90.00203 * 25 23 21 27 27 H 1.48501 * 109.46677 * 209.99885 * 25 23 21 28 28 H 1.48498 * 109.47241 * 330.00023 * 25 23 21 29 29 C 1.47582 * 91.04935 * 24.55302 * 20 19 18 30 30 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47132 * 300.00583 * 1 2 3 32 32 H 1.09008 * 109.46976 * 59.99777 * 1 2 3 33 33 H 0.97003 * 120.00096 * 94.99124 * 4 2 1 34 34 H 1.09002 * 109.63059 * 300.16827 * 9 7 5 35 35 H 1.08998 * 109.63071 * 60.76489 * 9 7 5 36 36 H 1.08998 * 111.42668 * 230.97405 * 11 10 9 37 37 H 1.08998 * 111.43214 * 355.87012 * 11 10 9 38 38 H 1.09002 * 118.35114 * 180.88459 * 12 11 10 39 39 H 1.08997 * 114.70168 * 55.81807 * 13 12 11 40 40 H 1.09005 * 114.69803 * 190.06629 * 13 12 11 41 41 H 1.09001 * 114.71730 * 179.97438 * 15 14 10 42 42 H 1.08998 * 114.77363 * 45.65689 * 15 14 10 43 43 H 1.09001 * 109.70170 * 187.22146 * 16 14 10 44 44 H 1.08998 * 109.69815 * 66.61879 * 16 14 10 45 45 H 1.09002 * 112.94522 * 290.33854 * 18 2 1 46 46 H 1.08995 * 113.77098 * 336.35595 * 19 18 2 47 47 H 1.09005 * 113.76257 * 107.74913 * 19 18 2 48 48 H 0.96998 * 119.99297 * 180.02562 * 24 23 21 49 49 H 1.09000 * 113.76499 * 221.15005 * 29 20 19 50 50 H 1.08997 * 113.87424 * 89.76654 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8591 1.1585 2.4115 7 6 2.6488 -0.7289 3.5877 8 1 2.0174 -1.5955 3.7838 9 6 4.0879 -1.1988 3.3471 10 7 4.5569 -1.8979 4.5497 11 6 6.0372 -2.1013 4.5402 12 6 6.4296 -1.1706 5.7425 13 6 5.3631 -1.3940 6.8656 14 6 4.4453 -0.9470 5.6980 15 6 5.5641 0.0875 5.4509 16 6 3.0667 -0.4012 5.9361 17 8 2.5847 0.1608 4.7028 18 6 2.0400 -0.7213 -1.2492 19 6 3.4848 -0.3522 -1.6316 20 7 2.9978 -0.3178 -3.0269 21 6 3.5875 -0.4758 -4.2526 22 1 2.9928 -0.4039 -5.1513 23 6 4.9497 -0.7286 -4.3401 24 7 5.6743 -0.8168 -3.2449 25 14 5.7538 -0.9449 -6.0122 26 1 6.2186 0.3739 -6.5123 27 1 6.9136 -1.8641 -5.8884 28 1 4.7686 -1.5164 -6.9651 29 6 1.6214 -0.0472 -2.5684 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 4.1137 -1.8782 2.4951 35 1 4.7266 -0.3374 3.1518 36 1 6.2975 -3.1408 4.7399 37 1 6.4808 -1.7556 3.6066 38 1 7.4840 -1.0780 6.0027 39 1 5.2487 -2.4296 7.1856 40 1 5.4157 -0.6842 7.6912 41 1 5.6333 0.8728 6.2038 42 1 5.6269 0.4567 4.4273 43 1 3.1053 0.3730 6.7024 44 1 2.4040 -1.2045 6.2576 45 1 1.8527 -1.7949 -1.2262 46 1 3.8048 0.6189 -1.2539 47 1 4.2070 -1.1449 -1.4365 48 1 6.6262 -0.9930 -3.3062 49 1 0.8587 -0.5969 -3.1200 50 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970190070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:25 Heat of formation + Delta-G solvation = 30.831727 kcal Electronic energy + Delta-G solvation = -30198.739270 eV Core-core repulsion = 26229.455595 eV Total energy + Delta-G solvation = -3969.283676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.08185 -41.13157 -39.79737 -38.35605 -36.21006 -34.83937 -34.13770 -32.17265 -30.49409 -30.05222 -29.32096 -26.74449 -26.47319 -25.78988 -25.44461 -24.68421 -22.93666 -21.58989 -21.29662 -20.70784 -19.90182 -18.80576 -18.38228 -18.06490 -17.12778 -16.92903 -16.87301 -16.64011 -16.27221 -15.88437 -15.72548 -15.47451 -15.09301 -14.96533 -14.64214 -14.46508 -14.12708 -13.96329 -13.74531 -13.52768 -13.38319 -13.25661 -13.10296 -12.92260 -12.80180 -12.70885 -12.53125 -12.38868 -12.08137 -12.00720 -11.85012 -11.75597 -11.67635 -11.49879 -11.26666 -11.22656 -10.89667 -10.78100 -10.63902 -10.09553 -9.71848 -8.93031 -7.91541 -5.24932 1.44274 1.46151 1.47113 1.54889 1.74986 2.46393 2.58957 2.82697 3.24839 3.28733 3.32725 3.37156 3.45379 3.48023 3.66825 3.76289 3.81909 3.94049 3.96645 3.99126 4.22767 4.28851 4.36299 4.47029 4.51674 4.54390 4.58554 4.61943 4.68159 4.74172 4.78701 4.81705 4.85225 4.85884 4.86844 4.94411 5.00711 5.07698 5.08660 5.11416 5.24508 5.33173 5.43731 5.44643 5.54158 5.64986 5.68972 5.92336 5.93510 6.51306 6.90871 7.17675 7.59981 8.55719 9.25263 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.002951 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.936018 B = 9484.913783 C =11176.275255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 H 0.057 0.943 4 N -0.703 5.703 5 C 0.520 3.480 6 O -0.568 6.568 7 C 0.088 3.912 8 H 0.113 0.887 9 C 0.015 3.985 10 N -0.473 5.473 11 C 0.027 3.973 12 C -0.136 4.136 13 C -0.087 4.087 14 C -0.001 4.001 15 C -0.183 4.183 16 C 0.088 3.912 17 O -0.382 6.382 18 C -0.107 4.107 19 C 0.168 3.832 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.085 0.915 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.978 3.022 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.130 3.870 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.414 0.586 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.041 0.959 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.000 1.000 47 H 0.044 0.956 48 H 0.247 0.753 49 H 0.067 0.933 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 -5.427 22.919 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.075 0.925 4 N -0.356 5.356 5 C 0.305 3.695 6 O -0.446 6.446 7 C 0.027 3.973 8 H 0.131 0.869 9 C -0.115 4.115 10 N -0.196 5.196 11 C -0.100 4.100 12 C -0.155 4.155 13 C -0.125 4.125 14 C -0.092 4.092 15 C -0.221 4.221 16 C 0.012 3.988 17 O -0.300 6.300 18 C -0.127 4.127 19 C 0.042 3.958 20 N -0.371 5.371 21 C -0.363 4.363 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.806 3.194 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.190 1.190 29 C 0.005 3.995 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.060 0.940 43 H 0.140 0.860 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.018 0.982 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.085 0.915 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.887 -5.016 22.698 23.754 hybrid contribution 1.656 0.630 -1.452 2.291 sum -3.230 -4.386 21.246 21.933 Atomic orbital electron populations 1.22052 0.93122 1.03335 1.02262 1.20862 0.95228 0.95715 0.82683 0.92476 1.45882 1.66525 1.14679 1.08513 1.20479 0.77356 0.86823 0.84834 1.90688 1.51049 1.17576 1.85305 1.21800 0.96846 0.92845 0.85842 0.86942 1.22974 0.94562 0.98305 0.95632 1.67251 1.15767 1.34928 1.01678 1.23957 0.86847 1.01533 0.97704 1.24877 0.99682 0.94868 0.96056 1.23701 0.91985 1.03190 0.93596 1.24101 0.95259 0.93817 0.95990 1.24574 0.98709 0.97479 1.01377 1.22108 0.91637 0.99524 0.85508 1.88170 1.84761 1.39806 1.17297 1.23445 0.96161 1.00687 0.92427 1.22175 0.94081 0.96346 0.83177 1.46437 1.05883 1.82806 1.01945 1.19460 0.91982 1.40472 0.84424 0.89757 1.25634 0.96758 1.02957 1.00782 1.70013 1.05783 1.56734 1.27743 0.85081 0.77934 0.77127 0.79218 1.21725 1.21929 1.19019 1.22683 0.87701 0.97501 0.91653 0.90349 0.93324 0.90640 0.74926 0.87688 0.94506 0.87459 0.91961 0.85887 0.89430 0.85996 0.87527 0.94011 0.85962 0.90470 0.87326 0.98236 0.93781 0.94375 0.91518 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.31 71.98 0.67 -3.03 16 2 C 0.16 4.86 2.38 44.99 0.11 4.97 16 3 H 0.06 2.13 7.41 -2.39 -0.02 2.11 16 4 N -0.70 -18.76 5.00 -442.54 -2.21 -20.97 16 5 C 0.52 15.86 7.14 87.66 0.63 16.49 16 6 O -0.57 -22.66 16.15 16.13 0.26 -22.40 16 7 C 0.09 2.16 3.13 29.94 0.09 2.26 16 8 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 9 C 0.01 0.34 4.66 86.42 0.40 0.75 16 10 N -0.47 -9.34 6.02 -870.70 -5.25 -14.59 16 11 C 0.03 0.47 7.01 87.22 0.61 1.08 16 12 C -0.14 -1.95 6.33 -15.59 -0.10 -2.05 16 13 C -0.09 -0.98 7.97 30.80 0.25 -0.73 16 14 C 0.00 -0.02 1.62 -4.98 -0.01 -0.03 16 15 C -0.18 -3.41 7.02 30.19 0.21 -3.19 16 16 C 0.09 1.58 6.75 71.07 0.48 2.06 16 17 O -0.38 -10.28 9.99 -129.84 -1.30 -11.57 16 18 C -0.11 -3.70 3.47 -10.13 -0.04 -3.73 16 19 C 0.17 7.98 7.08 86.44 0.61 8.59 16 20 N -0.64 -33.18 3.70 -716.06 -2.65 -35.83 16 21 C -0.24 -13.29 10.70 84.04 0.90 -12.39 16 22 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 24 N -0.95 -58.01 11.39 21.65 0.25 -57.76 16 25 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 C 0.13 5.03 7.64 86.49 0.66 5.69 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.77 7.52 -2.38 -0.02 1.75 16 33 H 0.41 8.73 8.27 -92.71 -0.77 7.96 16 34 H 0.10 2.28 7.79 -2.39 -0.02 2.26 16 35 H 0.04 1.05 5.97 -2.39 -0.01 1.03 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.26 7.73 -2.39 -0.02 1.24 16 38 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 0.86 7.88 -2.38 -0.02 0.84 16 41 H 0.11 1.66 7.89 -2.39 -0.02 1.64 16 42 H 0.04 1.05 6.08 -2.39 -0.01 1.04 16 43 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.00 -0.01 7.99 -2.39 -0.02 -0.03 16 47 H 0.04 2.32 7.17 -2.38 -0.02 2.30 16 48 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -76.59 388.18 -2.76 -79.35 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.17 Total: 22.48 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.95 Total: 13.24 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -9.86 Total: -129.15 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.04 Total: -33.97 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.59 -2.76 -79.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970190070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.179 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds