Wall clock time and date at job start Tue Mar 31 2020 18:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 N 1.46503 * 109.46878 * 240.00640 * 2 1 3 5 5 C 1.34783 * 120.00113 * 84.99530 * 4 2 1 6 6 O 1.21281 * 119.99516 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00055 * 180.02562 * 5 4 2 8 8 H 1.09002 * 110.32652 * 32.33791 * 7 5 4 9 9 C 1.54916 * 110.36578 * 270.10497 * 7 5 4 10 10 C 1.55156 * 101.57861 * 204.15154 * 9 7 5 11 11 C 1.54320 * 102.94308 * 35.50227 * 10 9 7 12 12 N 1.47179 * 107.29661 * 337.71487 * 11 10 9 13 13 C 1.34772 * 125.74126 * 179.04810 * 12 11 10 14 14 O 1.21281 * 120.00609 * 185.58433 * 13 12 11 15 15 C 1.50704 * 119.99866 * 5.57642 * 13 12 11 16 16 C 1.53003 * 117.49908 * 248.62723 * 15 13 12 17 17 C 1.53000 * 117.50113 * 180.02562 * 15 13 12 18 18 C 1.52990 * 109.47786 * 120.00579 * 2 1 3 19 19 C 1.53498 * 114.20604 * 300.00140 * 18 2 1 20 20 N 1.47069 * 87.98472 * 87.51751 * 19 18 2 21 21 C 1.36937 * 136.05251 * 207.08498 * 20 19 18 22 22 H 1.07998 * 120.00598 * 7.80371 * 21 20 19 23 23 C 1.38814 * 119.99613 * 187.79938 * 21 20 19 24 24 N 1.31625 * 119.99735 * 172.58356 * 23 21 20 25 25 Si 1.86804 * 120.00060 * 352.86635 * 23 21 20 26 26 H 1.48501 * 109.46987 * 175.85277 * 25 23 21 27 27 H 1.48495 * 109.46851 * 295.85113 * 25 23 21 28 28 H 1.48505 * 109.47050 * 55.85156 * 25 23 21 29 29 C 1.47057 * 87.88614 * 27.34407 * 20 19 18 30 30 H 1.09008 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47158 * 299.99211 * 1 2 3 32 32 H 1.08998 * 109.47599 * 59.99799 * 1 2 3 33 33 H 0.96996 * 120.00119 * 264.99366 * 4 2 1 34 34 H 1.08995 * 111.00303 * 322.22832 * 9 7 5 35 35 H 1.08999 * 111.00371 * 86.07566 * 9 7 5 36 36 H 1.09004 * 110.71833 * 153.86780 * 10 9 7 37 37 H 1.09003 * 110.72126 * 276.95796 * 10 9 7 38 38 H 1.09002 * 109.88254 * 97.22214 * 11 10 9 39 39 H 1.09005 * 109.87995 * 218.22993 * 11 10 9 40 40 H 1.08998 * 115.54749 * 34.33182 * 15 13 12 41 41 H 1.08996 * 117.49838 * 359.97438 * 16 15 13 42 42 H 1.09001 * 117.49713 * 145.01688 * 16 15 13 43 43 H 1.08992 * 117.49868 * 214.97989 * 17 15 13 44 44 H 1.08994 * 117.49596 * 359.97438 * 17 15 13 45 45 H 1.09002 * 113.42046 * 166.79741 * 18 2 1 46 46 H 1.09001 * 113.46719 * 332.73632 * 19 18 2 47 47 H 1.08999 * 113.46756 * 202.29724 * 19 18 2 48 48 H 0.97000 * 120.00161 * 5.26730 * 24 23 21 49 49 H 1.09002 * 113.47073 * 87.43442 * 29 20 19 50 50 H 1.08999 * 113.47284 * 217.87723 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3573 6 8 1.8588 1.1588 -2.4114 7 6 2.6486 -0.7285 -3.5880 8 1 2.3319 -1.7714 -3.5787 9 6 4.1926 -0.6346 -3.6728 10 6 4.4324 -0.8166 -5.1949 11 6 3.2203 -0.0980 -5.8241 12 7 2.1597 -0.0545 -4.8046 13 6 0.9444 0.5080 -4.9563 14 8 0.1847 0.5741 -4.0133 15 6 0.5296 1.0551 -6.2979 16 6 0.3813 2.5724 -6.4269 17 6 -0.8621 1.6817 -6.4056 18 6 2.0401 -0.7213 1.2490 19 6 1.5900 -0.0848 2.5713 20 7 0.3746 -0.9094 2.4945 21 6 -0.9127 -0.8129 2.9511 22 1 -1.2544 0.1008 3.4145 23 6 -1.7787 -1.8896 2.8184 24 7 -2.9664 -1.8526 3.3845 25 14 -1.2555 -3.3944 1.8429 26 1 -2.3103 -4.4356 1.9354 27 1 -1.0556 -3.0172 0.4206 28 1 0.0153 -3.9264 2.3973 29 6 1.1520 -1.8860 1.7170 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6316 -1.1528 34 1 4.5438 0.3406 -3.3357 35 1 4.6645 -1.4360 -3.1044 36 1 5.3641 -0.3389 -5.4983 37 1 4.4383 -1.8736 -5.4608 38 1 3.4993 0.9150 -6.1139 39 1 2.8738 -0.6511 -6.6973 40 1 0.9049 0.5103 -7.1641 41 1 0.5834 3.1749 -5.5413 42 1 0.6592 3.0262 -7.3782 43 1 -1.4024 1.5493 -7.3429 44 1 -1.4777 1.6979 -5.5063 45 1 3.1026 -0.9610 1.2073 46 1 1.3946 0.9847 2.4939 47 1 2.2326 -0.3364 3.4151 48 1 -3.2667 -1.0446 3.8293 49 1 1.6792 -2.6124 2.3355 50 1 0.5835 -2.3511 0.9116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970541568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:08 Heat of formation + Delta-G solvation = 8.661473 kcal Electronic energy + Delta-G solvation = -30621.963782 eV Core-core repulsion = 26651.718732 eV Total energy + Delta-G solvation = -3970.245050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87766 -41.05575 -39.82507 -38.39797 -36.94698 -35.91736 -34.49997 -32.74140 -31.89767 -30.17013 -29.73328 -27.03872 -26.28321 -25.79286 -24.12077 -23.39329 -22.97354 -22.36390 -21.43229 -20.70629 -19.87444 -19.33281 -18.69269 -18.24537 -17.44130 -16.98306 -16.80355 -16.68266 -16.12769 -15.81453 -15.66895 -15.54197 -15.36242 -15.13086 -14.72678 -14.46403 -14.22608 -13.84229 -13.64532 -13.56723 -13.35909 -13.14919 -13.08504 -13.00978 -12.68654 -12.57257 -12.52218 -12.23456 -12.18554 -12.06399 -11.71613 -11.68777 -11.55623 -11.48014 -11.30218 -10.99055 -10.89246 -10.86651 -10.72584 -10.05870 -9.65526 -9.07139 -8.62762 -5.41894 1.33158 1.46031 1.47581 1.56736 1.63828 1.95277 2.24347 2.54047 2.89414 3.02518 3.26006 3.36917 3.50434 3.60645 3.73293 3.76786 3.82579 3.84893 3.93053 4.07386 4.15873 4.22632 4.25022 4.39007 4.45456 4.49622 4.65338 4.66544 4.68426 4.77419 4.78421 4.81534 4.83084 4.87789 4.92479 4.97275 4.99050 5.01738 5.11306 5.16383 5.24491 5.26708 5.33076 5.38312 5.42420 5.60229 5.98186 6.44639 6.63461 6.73401 7.18606 7.36724 7.38435 8.32088 8.93556 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.003390 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.446718 B = 8256.667413 C = 9085.017764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.186 3.814 3 H 0.072 0.928 4 N -0.713 5.713 5 C 0.507 3.493 6 O -0.566 6.566 7 C 0.110 3.890 8 H 0.111 0.889 9 C -0.113 4.113 10 C -0.117 4.117 11 C 0.094 3.906 12 N -0.609 5.609 13 C 0.539 3.461 14 O -0.573 6.573 15 C -0.185 4.185 16 C -0.140 4.140 17 C -0.158 4.158 18 C -0.110 4.110 19 C 0.126 3.874 20 N -0.656 5.656 21 C -0.273 4.273 22 H 0.043 0.957 23 C -0.089 4.089 24 N -0.979 5.979 25 Si 1.107 2.893 26 H -0.311 1.311 27 H -0.279 1.279 28 H -0.247 1.247 29 C 0.093 3.907 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.012 0.988 33 H 0.412 0.588 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.160 0.840 41 H 0.069 0.931 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.038 0.962 47 H 0.068 0.932 48 H 0.243 0.757 49 H 0.068 0.932 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.377 -0.158 -26.614 35.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.082 3.918 3 H 0.090 0.910 4 N -0.366 5.366 5 C 0.294 3.706 6 O -0.443 6.443 7 C 0.003 3.997 8 H 0.129 0.871 9 C -0.151 4.151 10 C -0.155 4.155 11 C -0.027 4.027 12 N -0.344 5.344 13 C 0.329 3.671 14 O -0.451 6.451 15 C -0.205 4.205 16 C -0.178 4.178 17 C -0.196 4.196 18 C -0.130 4.130 19 C 0.000 4.000 20 N -0.385 5.385 21 C -0.401 4.401 22 H 0.061 0.939 23 C -0.279 4.279 24 N -0.625 5.625 25 Si 0.934 3.066 26 H -0.240 1.240 27 H -0.207 1.207 28 H -0.172 1.172 29 C -0.031 4.031 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.177 0.823 41 H 0.088 0.912 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.086 0.914 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.024 -0.701 -26.522 34.481 hybrid contribution -0.854 1.703 1.532 2.444 sum 21.170 1.002 -24.990 32.767 Atomic orbital electron populations 1.21967 0.96973 1.00882 0.99113 1.20200 0.92229 0.95974 0.83446 0.91020 1.45882 1.67072 1.14508 1.09145 1.21132 0.76935 0.87359 0.85208 1.90674 1.50105 1.18552 1.84951 1.22130 0.97968 0.96674 0.82941 0.87135 1.22806 0.88479 1.04311 0.99525 1.22688 0.97617 1.02878 0.92271 1.22410 0.86966 1.02289 0.91025 1.48383 1.14134 1.57248 1.14653 1.20107 0.80372 0.76813 0.89845 1.90791 1.53656 1.57493 1.43173 1.22244 1.03915 0.98787 0.95598 1.22959 1.00964 0.89566 1.04264 1.22972 0.90051 1.02549 1.03987 1.23037 1.00477 0.96556 0.92889 1.22564 0.86686 0.95495 0.95228 1.46072 1.04867 1.23178 1.64348 1.19841 0.86357 0.99629 1.34242 0.93896 1.26977 0.94973 1.04350 1.01647 1.71021 1.22361 1.28795 1.40352 0.83337 0.75385 0.72784 0.75139 1.24018 1.20664 1.17198 1.23097 0.92062 0.93923 0.93994 0.94004 0.92513 0.96854 0.75149 0.91492 0.85976 0.87313 0.87847 0.90759 0.88596 0.82264 0.91196 0.84030 0.84749 0.91316 0.84903 0.94344 0.91389 0.94772 0.91419 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.06 71.98 0.58 -5.48 16 2 C 0.19 6.59 2.76 44.99 0.12 6.71 16 3 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 4 N -0.71 -20.57 5.08 -442.54 -2.25 -22.81 16 5 C 0.51 15.89 5.86 87.66 0.51 16.40 16 6 O -0.57 -23.69 14.06 19.24 0.27 -23.42 16 7 C 0.11 2.25 3.57 44.72 0.16 2.41 16 8 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 9 C -0.11 -1.21 6.49 31.99 0.21 -1.00 16 10 C -0.12 -0.56 6.95 31.78 0.22 -0.34 16 11 C 0.09 0.93 6.38 86.70 0.55 1.48 16 12 N -0.61 -13.15 3.13 -791.86 -2.48 -15.63 16 13 C 0.54 15.79 7.05 87.66 0.62 16.41 16 14 O -0.57 -24.15 13.71 19.24 0.26 -23.88 16 15 C -0.18 -3.61 5.51 -11.54 -0.06 -3.68 16 16 C -0.14 -2.54 10.23 30.58 0.31 -2.23 16 17 C -0.16 -3.26 10.04 30.58 0.31 -2.96 16 18 C -0.11 -3.38 4.25 -10.37 -0.04 -3.42 16 19 C 0.13 4.68 7.86 83.18 0.65 5.34 16 20 N -0.66 -31.43 2.09 -737.97 -1.54 -32.97 16 21 C -0.27 -16.30 9.91 84.03 0.83 -15.47 16 22 H 0.04 2.82 8.05 -2.91 -0.02 2.80 16 23 C -0.09 -5.51 5.50 84.86 0.47 -5.04 16 24 N -0.98 -66.28 13.70 21.65 0.30 -65.98 16 25 Si 1.11 55.39 24.76 68.60 1.70 57.09 16 26 H -0.31 -16.21 7.11 99.48 0.71 -15.51 16 27 H -0.28 -13.23 5.84 99.48 0.58 -12.65 16 28 H -0.25 -10.64 6.20 99.48 0.62 -10.02 16 29 C 0.09 3.56 4.70 83.27 0.39 3.95 16 30 H 0.04 2.03 5.18 -2.38 -0.01 2.02 16 31 H 0.06 2.92 5.93 -2.39 -0.01 2.91 16 32 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.41 8.81 8.60 -92.71 -0.80 8.01 16 34 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.50 7.97 -2.38 -0.02 0.48 16 40 H 0.16 1.77 7.75 -2.39 -0.02 1.75 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.99 7.67 -2.39 -0.02 1.97 16 45 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.24 16.61 8.73 -92.71 -0.81 15.80 16 49 H 0.07 2.34 7.69 -2.39 -0.02 2.32 16 50 H 0.05 1.81 3.44 -2.39 -0.01 1.80 16 Total: -1.00 -95.82 385.11 1.99 -93.83 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.10 Total: 20.69 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 5.83 Total: 13.09 kcal Atomic # 7 Polarization: -131.42 SS G_CDS: -5.97 Total: -137.39 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: 0.53 Total: -47.30 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 1.70 Total: 57.09 kcal Total: -95.82 1.99 -93.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970541568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.490 kcal (2) G-P(sol) polarization free energy of solvation -95.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds