Wall clock time and date at job start Tue Mar 31 2020 18:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47643 * 2 1 4 4 N 1.46507 * 109.47091 * 119.99976 * 2 1 3 5 5 C 1.34773 * 119.99711 * 274.99645 * 4 2 1 6 6 O 1.21280 * 120.00527 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99387 * 179.97438 * 5 4 2 8 8 H 1.08994 * 110.32564 * 31.84014 * 7 5 4 9 9 C 1.54910 * 110.36718 * 269.59615 * 7 5 4 10 10 C 1.55158 * 101.57734 * 204.15483 * 9 7 5 11 11 C 1.54317 * 102.94442 * 35.50651 * 10 9 7 12 12 N 1.47182 * 107.29582 * 337.71060 * 11 10 9 13 13 C 1.34772 * 125.73690 * 179.04520 * 12 11 10 14 14 O 1.21287 * 120.00091 * 185.48669 * 13 12 11 15 15 C 1.50700 * 120.00042 * 5.48641 * 13 12 11 16 16 C 1.53001 * 117.49956 * 248.61904 * 15 13 12 17 17 C 1.52998 * 60.00074 * 252.51536 * 16 15 13 18 18 C 1.52997 * 109.47373 * 240.00051 * 2 1 3 19 19 C 1.53497 * 114.20522 * 59.99802 * 18 2 1 20 20 N 1.47067 * 87.98698 * 87.72289 * 19 18 2 21 21 C 1.36934 * 136.06118 * 207.08861 * 20 19 18 22 22 H 1.08008 * 119.99880 * 6.94724 * 21 20 19 23 23 C 1.38813 * 120.00237 * 186.94316 * 21 20 19 24 24 N 1.31615 * 119.99925 * 6.70719 * 23 21 20 25 25 Si 1.86799 * 119.99792 * 186.70484 * 23 21 20 26 26 H 1.48501 * 109.47000 * 84.99286 * 25 23 21 27 27 H 1.48496 * 109.46962 * 204.98718 * 25 23 21 28 28 H 1.48492 * 109.47345 * 324.99080 * 25 23 21 29 29 C 1.47064 * 87.88429 * 27.34016 * 20 19 18 30 30 H 1.09000 * 109.46862 * 59.99779 * 1 2 3 31 31 H 1.08996 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46824 * 300.00387 * 1 2 3 33 33 H 0.96997 * 119.99684 * 95.00396 * 4 2 1 34 34 H 1.08996 * 111.00540 * 322.22692 * 9 7 5 35 35 H 1.09004 * 110.99978 * 86.08341 * 9 7 5 36 36 H 1.09005 * 110.71744 * 153.87137 * 10 9 7 37 37 H 1.09002 * 110.72179 * 276.96010 * 10 9 7 38 38 H 1.08994 * 109.88401 * 97.22593 * 11 10 9 39 39 H 1.08998 * 109.87907 * 218.23444 * 11 10 9 40 40 H 1.08999 * 115.54744 * 34.33358 * 15 13 12 41 41 H 1.09000 * 117.49429 * 0.02562 * 16 15 13 42 42 H 1.08995 * 117.49617 * 145.02305 * 16 15 13 43 43 H 1.09008 * 117.49810 * 252.51156 * 17 16 15 44 44 H 1.08999 * 117.52277 * 107.48762 * 17 16 15 45 45 H 1.09003 * 113.28274 * 286.94011 * 18 2 1 46 46 H 1.09001 * 113.46869 * 332.93916 * 19 18 2 47 47 H 1.09006 * 113.47057 * 202.50222 * 19 18 2 48 48 H 0.97003 * 120.00215 * 179.97438 * 24 23 21 49 49 H 1.09005 * 113.46578 * 87.43803 * 29 20 19 50 50 H 1.09002 * 113.47149 * 217.87931 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6489 -0.7289 3.5877 8 1 3.3525 -1.5139 3.3111 9 6 1.4634 -1.3245 4.3874 10 6 2.0649 -1.4152 5.8148 11 6 2.9641 -0.1634 5.8912 12 7 3.2856 0.2293 4.5097 13 6 4.0359 1.2885 4.1468 14 8 4.1537 1.5749 2.9741 15 6 4.7285 2.1169 5.1981 16 6 4.2239 3.5444 5.4182 17 6 5.5654 3.3060 4.7223 18 6 2.0400 -0.7212 -1.2492 19 6 1.5898 -0.0846 -2.5714 20 7 2.7750 0.7830 -2.4972 21 6 3.1163 2.0275 -2.9554 22 1 2.3729 2.6505 -3.4307 23 6 4.4175 2.4883 -2.8092 24 7 5.3531 1.6835 -2.3517 25 14 4.8405 4.2506 -3.2616 26 1 4.5467 5.1414 -2.1104 27 1 6.2831 4.3415 -3.6022 28 1 4.0283 4.6699 -4.4318 29 6 3.4347 -0.2767 -1.7197 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 0.6033 -0.6553 4.3677 35 1 1.1964 -2.3126 4.0124 36 1 1.2783 -1.3717 6.5682 37 1 2.6550 -2.3248 5.9276 38 1 2.4325 0.6448 6.3934 39 1 3.8801 -0.3976 6.4335 40 1 5.0838 1.5681 6.0702 41 1 3.3908 3.8842 4.8030 42 1 4.2471 3.9351 6.4355 43 1 6.4713 3.5399 5.2817 44 1 5.6155 3.4890 3.6489 45 1 1.9086 -1.8024 -1.2063 46 1 0.6483 0.4590 -2.4930 47 1 1.6095 -0.7751 -3.4146 48 1 6.2624 2.0054 -2.2498 49 1 3.9408 -1.0179 -2.3383 50 1 4.0650 0.1032 -0.9156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970541569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:12 Heat of formation + Delta-G solvation = 24.507053 kcal Electronic energy + Delta-G solvation = -30652.279289 eV Core-core repulsion = 26682.721355 eV Total energy + Delta-G solvation = -3969.557934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.64553 -39.14066 -38.19251 -37.25463 -35.81366 -34.38311 -32.11187 -31.75072 -30.68680 -29.06979 -27.48123 -25.29933 -24.69402 -23.83569 -23.00707 -22.42895 -22.01370 -21.29204 -20.16195 -19.23768 -18.29827 -17.46084 -17.19769 -16.61042 -15.94123 -15.66320 -15.05990 -14.91771 -14.72474 -14.54801 -14.30662 -13.77499 -13.67543 -13.54330 -13.31468 -13.11285 -12.93026 -12.60745 -12.41046 -12.26367 -12.05347 -11.73493 -11.62201 -11.59100 -11.52541 -11.27451 -11.12600 -10.79540 -10.66429 -10.61947 -10.61589 -10.49727 -10.20392 -9.78669 -9.67001 -9.55999 -9.42654 -9.07552 -8.65620 -8.60671 -8.44629 -6.73504 -5.63787 -2.94138 2.66744 2.71847 3.17658 3.50506 3.55380 3.56645 3.57861 3.89963 4.19067 4.31125 4.59664 4.60309 4.68193 4.77547 4.87933 4.94034 4.99487 5.05319 5.17552 5.33865 5.37998 5.39432 5.42115 5.47013 5.52113 5.55171 5.62174 5.67292 5.69658 5.84011 5.86585 5.95697 6.00908 6.14161 6.16903 6.22127 6.24787 6.39872 6.56271 6.66767 6.75219 6.89684 7.06288 7.33084 7.42849 7.52345 7.69092 7.97507 8.11407 8.40211 8.75251 9.17347 9.85092 10.79251 11.54971 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.004219 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.459950 B = 6635.199219 C = 8661.073375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 H 0.101 0.899 4 N -0.719 5.719 5 C 0.515 3.485 6 O -0.512 6.512 7 C 0.118 3.882 8 H 0.091 0.909 9 C -0.120 4.120 10 C -0.130 4.130 11 C 0.106 3.894 12 N -0.609 5.609 13 C 0.552 3.448 14 O -0.492 6.492 15 C -0.187 4.187 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.155 4.155 19 C 0.125 3.875 20 N -0.606 5.606 21 C -0.221 4.221 22 H 0.079 0.921 23 C -0.003 4.003 24 N -0.916 5.916 25 Si 0.909 3.091 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.167 3.833 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.392 0.608 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.042 0.958 47 H 0.032 0.968 48 H 0.253 0.747 49 H 0.027 0.973 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 -9.730 21.360 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.119 0.881 4 N -0.370 5.370 5 C 0.298 3.702 6 O -0.385 6.385 7 C 0.010 3.990 8 H 0.109 0.891 9 C -0.158 4.158 10 C -0.167 4.167 11 C -0.017 4.017 12 N -0.346 5.346 13 C 0.339 3.661 14 O -0.363 6.363 15 C -0.208 4.208 16 C -0.190 4.190 17 C -0.186 4.186 18 C -0.175 4.175 19 C -0.002 4.002 20 N -0.332 5.332 21 C -0.348 4.348 22 H 0.097 0.903 23 C -0.201 4.201 24 N -0.562 5.562 25 Si 0.739 3.261 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.041 3.959 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.224 0.776 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.044 0.956 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.400 -8.290 20.636 23.141 hybrid contribution 0.588 0.199 -0.312 0.695 sum -5.812 -8.091 20.324 22.634 Atomic orbital electron populations 1.22112 0.96222 1.00962 1.02027 1.20537 0.92438 0.98329 0.81694 0.88132 1.45944 1.67910 1.13400 1.09756 1.20163 0.78393 0.87428 0.84198 1.90711 1.48293 1.15114 1.84430 1.21825 0.95384 0.91476 0.90276 0.89096 1.22734 0.96720 1.01841 0.94535 1.22630 0.99205 0.97676 0.97235 1.21989 0.99052 0.97163 0.83524 1.48145 1.51837 1.28190 1.06455 1.19330 0.78288 0.79164 0.89274 1.90902 1.59968 1.66952 1.18515 1.22101 1.06506 0.91309 1.00886 1.22923 0.99124 0.94765 1.02195 1.22984 0.94456 0.98309 1.02810 1.23317 1.02104 0.97364 0.94725 1.22418 0.92672 0.92171 0.92910 1.45655 1.12284 1.12788 1.62452 1.18872 0.94008 0.88369 1.33571 0.90294 1.24785 0.95389 0.98174 1.01704 1.69833 1.01180 1.34108 1.51077 0.86188 0.77207 0.84656 0.78023 1.21375 1.21725 1.20762 1.22015 0.91125 0.88895 0.93846 0.91473 0.93254 0.93004 0.77563 0.89907 0.89085 0.89641 0.90159 0.91292 0.91292 0.86329 0.88055 0.88070 0.88039 0.87096 0.91447 0.93955 0.95067 0.93739 0.95572 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.29 37.16 0.35 -2.13 16 2 C 0.17 3.31 2.43 -67.93 -0.17 3.14 16 3 H 0.10 2.54 7.37 -51.93 -0.38 2.16 16 4 N -0.72 -11.64 5.08 -53.80 -0.27 -11.91 16 5 C 0.51 9.02 5.83 -10.98 -0.06 8.95 16 6 O -0.51 -11.48 14.11 -17.63 -0.25 -11.73 16 7 C 0.12 1.49 3.57 -67.56 -0.24 1.25 16 8 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 9 C -0.12 -1.00 6.49 -24.58 -0.16 -1.16 16 10 C -0.13 -0.78 6.95 -24.90 -0.17 -0.95 16 11 C 0.11 0.87 6.38 -2.98 -0.02 0.85 16 12 N -0.61 -8.10 3.13 -164.22 -0.51 -8.62 16 13 C 0.55 9.25 7.05 -10.99 -0.08 9.17 16 14 O -0.49 -11.22 13.74 -17.64 -0.24 -11.46 16 15 C -0.19 -2.34 5.51 -91.77 -0.51 -2.84 16 16 C -0.15 -1.77 10.23 -26.73 -0.27 -2.04 16 17 C -0.15 -1.89 10.04 -26.73 -0.27 -2.16 16 18 C -0.16 -2.97 3.72 -89.97 -0.33 -3.31 16 19 C 0.13 2.67 8.08 -8.51 -0.07 2.60 16 20 N -0.61 -16.50 3.57 -184.59 -0.66 -17.16 16 21 C -0.22 -6.64 10.73 -15.06 -0.16 -6.80 16 22 H 0.08 2.29 7.84 -52.48 -0.41 1.87 16 23 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 24 N -0.92 -29.34 11.83 55.49 0.66 -28.68 16 25 Si 0.91 23.94 29.56 -169.99 -5.02 18.92 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 29 C 0.17 4.18 6.77 -8.38 -0.06 4.12 16 30 H 0.07 1.09 6.50 -51.93 -0.34 0.75 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.39 4.96 8.60 -40.82 -0.35 4.61 16 34 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.44 7.97 -51.93 -0.41 0.03 16 40 H 0.12 1.10 7.75 -51.93 -0.40 0.70 16 41 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.11 1.79 7.67 -51.93 -0.40 1.39 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.04 0.86 6.43 -51.93 -0.33 0.52 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.06 1.78 7.59 -51.93 -0.39 1.39 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -40.37 400.84 -11.06 -51.43 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.47 Total: 4.67 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -2.32 Total: 8.50 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.79 Total: -66.37 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.49 Total: -23.19 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.02 Total: 18.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -40.37 -11.06 -51.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970541569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.934 kcal (2) G-P(sol) polarization free energy of solvation -40.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds