Wall clock time and date at job start Tue Mar 31 2020 19:32:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 H 1.09001 * 109.47447 * 2 1
4 4 C 1.50702 * 109.47167 * 120.00121 * 2 1 3
5 5 O 1.21284 * 120.00019 * 120.00068 * 4 2 1
6 6 N 1.34778 * 120.00301 * 299.99610 * 4 2 1
7 7 C 1.47669 * 134.45465 * 179.97438 * 6 4 2
8 8 C 1.53446 * 85.97360 * 155.71660 * 7 6 4
9 9 C 1.47670 * 134.44808 * 0.02562 * 6 4 2
10 10 C 1.52629 * 113.73051 * 137.83914 * 8 7 6
11 11 C 1.53188 * 109.34241 * 188.77973 * 10 8 7
12 12 C 1.53144 * 109.35671 * 300.94524 * 11 10 8
13 13 N 1.46897 * 109.09982 * 56.43975 * 12 11 10
14 14 C 1.36938 * 120.69006 * 124.66997 * 13 12 11
15 15 H 1.08004 * 119.99375 * 333.26953 * 14 13 12
16 16 C 1.38813 * 120.00127 * 152.99928 * 14 13 12
17 17 N 1.31610 * 119.99994 * 343.44953 * 16 14 13
18 18 Si 1.86801 * 119.99709 * 163.45599 * 16 14 13
19 19 H 1.48502 * 109.47297 * 359.97438 * 18 16 14
20 20 H 1.48501 * 109.47194 * 120.00090 * 18 16 14
21 21 H 1.48504 * 109.46562 * 239.99579 * 18 16 14
22 22 C 1.47117 * 118.62087 * 304.94325 * 13 12 11
23 23 C 1.53005 * 109.47174 * 239.99862 * 2 1 3
24 24 H 1.08996 * 110.21447 * 298.07065 * 23 2 1
25 25 C 1.54475 * 110.24345 * 60.00229 * 23 2 1
26 26 C 1.54624 * 101.76933 * 93.58186 * 25 23 2
27 27 C 1.51282 * 104.19255 * 24.79731 * 26 25 23
28 28 O 1.21284 * 124.94259 * 163.78016 * 27 26 25
29 29 N 1.34420 * 110.11517 * 343.74779 * 27 26 25
30 30 H 1.09001 * 109.47447 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47462 * 299.99998 * 1 2 3
32 32 H 1.09005 * 109.47549 * 59.99980 * 1 2 3
33 33 H 1.08994 * 113.79079 * 41.45592 * 7 6 4
34 34 H 1.08995 * 113.89760 * 269.98932 * 7 6 4
35 35 H 1.09004 * 113.79188 * 90.01907 * 9 6 4
36 36 H 1.08994 * 113.79854 * 318.54827 * 9 6 4
37 37 H 1.09004 * 109.49079 * 68.82486 * 10 8 7
38 38 H 1.08998 * 109.51780 * 308.75468 * 10 8 7
39 39 H 1.08999 * 109.49515 * 180.97630 * 11 10 8
40 40 H 1.09001 * 109.50673 * 60.91420 * 11 10 8
41 41 H 1.09001 * 109.53061 * 296.55845 * 12 11 10
42 42 H 1.08996 * 109.53265 * 176.32775 * 12 11 10
43 43 H 0.97002 * 120.00248 * 179.97438 * 17 16 14
44 44 H 1.09010 * 109.63664 * 170.80841 * 22 13 12
45 45 H 1.09007 * 109.63683 * 291.41806 * 22 13 12
46 46 H 1.08999 * 110.97156 * 211.70761 * 25 23 2
47 47 H 1.09008 * 110.96919 * 335.46385 * 25 23 2
48 48 H 1.09005 * 110.48696 * 143.47196 * 26 25 23
49 49 H 1.08999 * 110.48797 * 265.99086 * 26 25 23
50 50 H 0.97006 * 124.34377 * 179.61311 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0322 -0.7104 1.2305
5 8 2.7295 -1.6965 1.1192
6 7 1.7068 -0.2500 2.4546
7 6 2.0093 -0.6787 3.8349
8 6 1.7488 0.7809 4.2301
9 6 0.9038 0.8848 2.9528
10 6 0.9387 0.9344 5.5145
11 6 0.5511 2.4051 5.6973
12 6 1.8200 3.2601 5.7622
13 7 2.6157 3.0325 4.5486
14 6 2.9899 4.0810 3.7513
15 1 2.3931 4.9809 3.7273
16 6 4.1393 3.9895 2.9783
17 7 5.0359 3.0622 3.2396
18 14 4.4133 5.1827 1.5675
19 1 3.2657 6.1214 1.4829
20 1 5.6636 5.9487 1.8027
21 1 4.5283 4.4262 0.2948
22 6 2.9969 1.6539 4.2041
23 6 2.0399 -0.7213 -1.2493
24 1 1.7117 -1.7607 -1.2444
25 6 1.5349 -0.0070 -2.5225
26 6 2.7104 0.9474 -2.8359
27 6 3.9086 0.2833 -2.1941
28 8 5.0657 0.5538 -2.4370
29 7 3.5043 -0.6495 -1.3148
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 3.0419 -0.9960 3.9804
34 1 1.2858 -1.3817 4.2476
35 1 -0.1493 0.6465 3.1017
36 1 1.0578 1.8099 2.3974
37 1 1.5386 0.6081 6.3641
38 1 0.0367 0.3257 5.4510
39 1 -0.0128 2.5203 6.6229
40 1 -0.0617 2.7273 4.8555
41 1 2.4040 2.9795 6.6388
42 1 1.5469 4.3133 5.8268
43 1 5.8389 2.9980 2.6992
44 1 3.4360 1.6337 3.2066
45 1 3.7169 1.2802 4.9322
46 1 1.3826 -0.7182 -3.3343
47 1 0.6216 0.5525 -2.3196
48 1 2.8541 1.0347 -3.9129
49 1 2.5335 1.9282 -2.3947
50 1 4.1035 -1.2039 -0.7907
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000982029360.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:32:01
Heat of formation + Delta-G solvation = -20.283269 kcal
Electronic energy + Delta-G solvation = -31439.645190 eV
Core-core repulsion = 27468.145002 eV
Total energy + Delta-G solvation = -3971.500188 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.88946 -40.10429 -38.27918 -36.53834 -35.72596 -33.26271 -32.88044 -31.20515
-30.36821 -29.70335 -26.91529 -26.18656 -25.92136 -25.39363 -24.11912 -22.31643
-21.19904 -20.41190 -20.36837 -18.90177 -17.98705 -17.51579 -16.82336 -16.64268
-16.24499 -15.63639 -15.08423 -15.04865 -14.75620 -14.10628 -13.93739 -13.75835
-13.64739 -13.50267 -13.44363 -13.21473 -13.09586 -12.95110 -12.72240 -12.28484
-12.14739 -11.99835 -11.87012 -11.70904 -11.61598 -11.33837 -11.25409 -11.00311
-10.91519 -10.78476 -10.49300 -10.31378 -10.19112 -9.94791 -9.77480 -9.72537
-9.54723 -9.30750 -8.97747 -8.53012 -8.35446 -6.74809 -5.83696 -3.25877
2.73393 2.88696 3.05828 3.35285 3.41926 3.47039 3.50820 4.19963
4.38533 4.44048 4.48379 4.63709 4.75972 4.86649 5.04393 5.13957
5.18432 5.24052 5.29351 5.39222 5.40988 5.49196 5.51684 5.57505
5.58958 5.65702 5.69997 5.75330 5.78087 5.85794 5.91063 5.93632
6.03269 6.04164 6.12650 6.22622 6.34741 6.45320 6.50345 6.70684
6.78600 6.92269 6.96113 7.22572 7.23795 7.57286 7.75649 8.01892
8.37752 8.38267 8.43266 9.15423 9.79173 10.35337 11.24828
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.010037 B = 0.005285 C = 0.003986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2789.111135 B = 5296.553049 C = 7023.131896
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.123 4.123
3 H 0.103 0.897
4 C 0.545 3.455
5 O -0.555 6.555
6 N -0.630 5.630
7 C 0.113 3.887
8 C -0.109 4.109
9 C 0.115 3.885
10 C -0.095 4.095
11 C -0.133 4.133
12 C 0.143 3.857
13 N -0.589 5.589
14 C -0.256 4.256
15 H 0.067 0.933
16 C 0.006 3.994
17 N -0.898 5.898
18 Si 0.894 3.106
19 H -0.277 1.277
20 H -0.289 1.289
21 H -0.287 1.287
22 C 0.198 3.802
23 C 0.153 3.847
24 H 0.094 0.906
25 C -0.131 4.131
26 C -0.159 4.159
27 C 0.515 3.485
28 O -0.538 6.538
29 N -0.716 5.716
30 H 0.061 0.939
31 H 0.068 0.932
32 H 0.072 0.928
33 H 0.079 0.921
34 H 0.076 0.924
35 H 0.074 0.926
36 H 0.089 0.911
37 H 0.061 0.939
38 H 0.050 0.950
39 H 0.051 0.949
40 H 0.058 0.942
41 H 0.017 0.983
42 H 0.053 0.947
43 H 0.255 0.745
44 H 0.092 0.908
45 H 0.023 0.977
46 H 0.085 0.915
47 H 0.096 0.904
48 H 0.100 0.900
49 H 0.105 0.895
50 H 0.417 0.583
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.846 -7.308 -4.755 17.217
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.145 4.145
3 H 0.121 0.879
4 C 0.335 3.665
5 O -0.434 6.434
6 N -0.364 5.364
7 C -0.010 4.010
8 C -0.111 4.111
9 C -0.008 4.008
10 C -0.133 4.133
11 C -0.172 4.172
12 C 0.017 3.983
13 N -0.312 5.312
14 C -0.386 4.386
15 H 0.085 0.915
16 C -0.193 4.193
17 N -0.541 5.541
18 Si 0.723 3.277
19 H -0.202 1.202
20 H -0.216 1.216
21 H -0.214 1.214
22 C 0.072 3.928
23 C 0.046 3.954
24 H 0.112 0.888
25 C -0.169 4.169
26 C -0.200 4.200
27 C 0.301 3.699
28 O -0.415 6.415
29 N -0.371 5.371
30 H 0.080 0.920
31 H 0.087 0.913
32 H 0.091 0.909
33 H 0.098 0.902
34 H 0.094 0.906
35 H 0.092 0.908
36 H 0.108 0.892
37 H 0.079 0.921
38 H 0.069 0.931
39 H 0.070 0.930
40 H 0.076 0.924
41 H 0.035 0.965
42 H 0.072 0.928
43 H 0.065 0.935
44 H 0.110 0.890
45 H 0.041 0.959
46 H 0.104 0.896
47 H 0.115 0.885
48 H 0.119 0.881
49 H 0.123 0.877
50 H 0.258 0.742
Dipole moment (debyes) X Y Z Total
from point charges -13.696 -7.687 -5.301 16.577
hybrid contribution 0.430 0.366 -0.317 0.647
sum -13.267 -7.321 -5.618 16.160
Atomic orbital electron populations
1.21843 0.92214 1.02773 1.03369 1.21748 0.97908 1.01904 0.92980
0.87865 1.20009 0.79862 0.83498 0.83132 1.90626 1.39369 1.27259
1.86184 1.49877 1.51244 1.30823 1.04418 1.23209 1.01596 0.97004
0.79205 1.22881 0.99894 0.94687 0.93660 1.23280 0.94436 0.89349
0.93712 1.21295 0.98207 0.97071 0.96727 1.22012 0.99451 0.95485
1.00269 1.20891 0.90665 0.97062 0.89681 1.44021 1.61549 1.02315
1.23294 1.19163 1.04238 0.96066 1.19095 0.91539 1.25017 0.94996
0.98368 1.00922 1.69992 1.09037 1.35760 1.39336 0.86365 0.77846
0.80660 0.82797 1.20190 1.21592 1.21393 1.20417 0.88541 0.81905
1.01954 1.21369 0.80525 1.00368 0.93094 0.88804 1.22773 0.98652
0.98720 0.96750 1.22371 0.93912 1.00586 1.03090 1.20913 0.89978
0.79501 0.79510 1.90754 1.20669 1.65178 1.64874 1.46318 1.07918
1.39742 1.43109 0.92004 0.91297 0.90929 0.90237 0.90554 0.90761
0.89228 0.92053 0.93123 0.93019 0.92353 0.96480 0.92843 0.93522
0.89007 0.95948 0.89599 0.88542 0.88124 0.87697 0.74202
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.31 8.83 37.15 0.33 -0.99 16
2 C -0.12 -1.57 2.34 -91.77 -0.21 -1.78 16
3 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16
4 C 0.55 8.95 7.25 -10.98 -0.08 8.87 16
5 O -0.56 -10.53 15.53 5.55 0.09 -10.44 16
6 N -0.63 -10.09 3.41 -180.46 -0.62 -10.71 16
7 C 0.11 1.75 7.97 -3.18 -0.03 1.72 16
8 C -0.11 -1.79 0.87 -154.65 -0.14 -1.92 16
9 C 0.11 1.70 5.67 -3.15 -0.02 1.68 16
10 C -0.09 -1.34 5.07 -26.82 -0.14 -1.47 16
11 C -0.13 -1.98 6.01 -26.56 -0.16 -2.14 16
12 C 0.14 2.74 6.46 -3.75 -0.02 2.72 16
13 N -0.59 -13.64 3.01 -172.73 -0.52 -14.16 16
14 C -0.26 -6.65 9.59 -15.06 -0.14 -6.79 16
15 H 0.07 1.70 7.88 -52.48 -0.41 1.29 16
16 C 0.01 0.17 4.93 -17.43 -0.09 0.09 16
17 N -0.90 -25.91 11.16 55.49 0.62 -25.30 16
18 Si 0.89 21.63 29.59 -169.99 -5.03 16.60 16
19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
22 C 0.20 4.38 4.31 -4.05 -0.02 4.37 16
23 C 0.15 1.78 2.56 -67.01 -0.17 1.61 16
24 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16
25 C -0.13 -1.11 6.52 -25.10 -0.16 -1.27 16
26 C -0.16 -1.80 6.86 -26.74 -0.18 -1.98 16
27 C 0.52 8.44 8.43 -10.86 -0.09 8.35 16
28 O -0.54 -11.34 18.03 5.55 0.10 -11.24 16
29 N -0.72 -10.79 5.40 -52.77 -0.29 -11.07 16
30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.07 0.65 6.12 -51.93 -0.32 0.34 16
32 H 0.07 0.49 6.11 -51.93 -0.32 0.17 16
33 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16
34 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16
35 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16
36 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16
37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.05 0.60 8.12 -51.93 -0.42 0.17 16
39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
40 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16
41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
42 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16
43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16
44 H 0.09 2.37 5.96 -51.92 -0.31 2.06 16
45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
47 H 0.10 0.62 5.82 -51.92 -0.30 0.32 16
48 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16
49 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16
50 H 0.42 6.92 8.01 -40.82 -0.33 6.59 16
LS Contribution 386.82 15.07 5.83 5.83
Total: -1.00 -33.53 386.82 -9.40 -42.93
By element:
Atomic # 1 Polarization: 14.77 SS G_CDS: -8.26 Total: 6.51 kcal
Atomic # 6 Polarization: 12.37 SS G_CDS: -1.32 Total: 11.05 kcal
Atomic # 7 Polarization: -60.43 SS G_CDS: -0.80 Total: -61.23 kcal
Atomic # 8 Polarization: -21.87 SS G_CDS: 0.19 Total: -21.69 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -33.53 -9.40 -42.93 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000982029360.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.643 kcal
(2) G-P(sol) polarization free energy of solvation -33.528 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds