Wall clock time and date at job start Tue Mar 31 2020 19:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46623 * 2 1 4 4 C 1.50694 * 109.47093 * 239.99826 * 2 1 3 5 5 O 1.21287 * 119.99961 * 248.85899 * 4 2 1 6 6 N 1.34781 * 120.00442 * 68.85878 * 4 2 1 7 7 C 1.47671 * 134.44748 * 354.61179 * 6 4 2 8 8 C 1.53461 * 86.09199 * 155.77474 * 7 6 4 9 9 C 1.47909 * 134.54948 * 174.55285 * 6 4 2 10 10 C 1.52630 * 113.67259 * 137.82903 * 8 7 6 11 11 C 1.53187 * 109.34655 * 74.02087 * 10 8 7 12 12 C 1.53144 * 109.34928 * 59.06944 * 11 10 8 13 13 N 1.46897 * 109.09127 * 303.54154 * 12 11 10 14 14 C 1.36934 * 120.68759 * 235.31491 * 13 12 11 15 15 H 1.07993 * 119.99996 * 31.60168 * 14 13 12 16 16 C 1.38817 * 119.99921 * 211.59676 * 14 13 12 17 17 N 1.31617 * 119.99753 * 10.81451 * 16 14 13 18 18 Si 1.86793 * 120.00056 * 190.80944 * 16 14 13 19 19 H 1.48498 * 109.47212 * 60.00365 * 18 16 14 20 20 H 1.48504 * 109.47342 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47208 * 300.00397 * 18 16 14 22 22 C 1.47117 * 118.62231 * 55.34758 * 13 12 11 23 23 C 1.53001 * 109.47039 * 119.99587 * 2 1 3 24 24 H 1.08999 * 110.21558 * 59.52563 * 23 2 1 25 25 C 1.54485 * 110.24726 * 297.50123 * 23 2 1 26 26 C 1.54625 * 101.76736 * 266.41842 * 25 23 2 27 27 C 1.51284 * 104.19314 * 335.20255 * 26 25 23 28 28 O 1.21286 * 124.94010 * 196.27453 * 27 26 25 29 29 N 1.34420 * 110.11802 * 16.25404 * 27 26 25 30 30 H 1.09000 * 109.47146 * 305.52602 * 1 2 3 31 31 H 1.09000 * 109.47130 * 65.53088 * 1 2 3 32 32 H 1.08998 * 109.46798 * 185.53314 * 1 2 3 33 33 H 1.09001 * 113.79497 * 41.46094 * 7 6 4 34 34 H 1.08998 * 113.79580 * 270.09977 * 7 6 4 35 35 H 1.09001 * 113.68830 * 89.95589 * 9 6 4 36 36 H 1.09005 * 113.96738 * 318.52946 * 9 6 4 37 37 H 1.09001 * 109.49688 * 193.98184 * 10 8 7 38 38 H 1.09009 * 109.49422 * 314.05680 * 10 8 7 39 39 H 1.09002 * 109.48990 * 179.03196 * 11 10 8 40 40 H 1.08997 * 109.48992 * 299.10176 * 11 10 8 41 41 H 1.08995 * 109.53762 * 63.43333 * 12 11 10 42 42 H 1.08998 * 109.52984 * 183.58803 * 12 11 10 43 43 H 0.97002 * 120.00294 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.63734 * 188.92524 * 22 13 12 45 45 H 1.08996 * 109.64245 * 68.30420 * 22 13 12 46 46 H 1.09008 * 110.96566 * 24.53763 * 25 23 2 47 47 H 1.09001 * 110.96908 * 148.29692 * 25 23 2 48 48 H 1.08990 * 110.48772 * 216.52669 * 26 25 23 49 49 H 1.08999 * 110.48504 * 93.87495 * 26 25 23 50 50 H 0.96996 * 124.35228 * 180.38996 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5917 -1.7816 -1.1263 6 7 1.8602 -0.1556 -2.4466 7 6 1.1595 1.0447 -2.9457 8 6 2.1319 0.9904 -4.1317 9 6 2.2969 -0.5023 -3.8165 10 6 1.4703 1.2639 -5.4797 11 6 1.1569 2.7587 -5.5972 12 6 2.4551 3.5610 -5.4685 13 7 3.1071 3.2191 -4.1973 14 6 3.4309 4.1953 -3.2933 15 1 2.8201 5.0824 -3.2146 16 6 4.5442 4.0445 -2.4779 17 7 5.4058 3.0777 -2.7128 18 14 4.8196 5.2139 -1.0476 19 1 3.6727 5.1259 -0.1084 20 1 6.0703 4.8426 -0.3383 21 1 4.9350 6.6032 -1.5591 22 6 3.4056 1.8063 -3.9160 23 6 2.0401 -0.7212 1.2493 24 1 1.6765 -1.7486 1.2659 25 6 1.5873 0.0287 2.5218 26 6 2.8021 0.9449 2.7970 27 6 3.9624 0.2294 2.1409 28 8 5.1332 0.4612 2.3570 29 7 3.5071 -0.7008 1.2840 30 1 -0.3633 0.5971 0.8364 31 1 -0.3633 0.4257 -0.9354 32 1 -0.3633 -1.0229 0.0991 33 1 1.2865 1.9231 -2.3129 34 1 0.1202 0.8648 -3.2206 35 1 1.5962 -1.1445 -4.3502 36 1 3.3271 -0.8533 -3.8774 37 1 2.1460 0.9697 -6.2829 38 1 0.5456 0.6914 -5.5539 39 1 0.6999 2.9594 -6.5662 40 1 0.4693 3.0496 -4.8032 41 1 3.1194 3.3147 -6.2967 42 1 2.2281 4.6269 -5.4878 43 1 6.1840 2.9725 -2.1433 44 1 3.7378 1.7007 -2.8832 45 1 4.1848 1.4547 -4.5923 46 1 0.6903 0.6175 2.3291 47 1 1.4269 -0.6650 3.3471 48 1 2.9712 1.0423 3.8693 49 1 2.6519 1.9243 2.3428 50 1 4.0752 -1.2836 0.7563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982029363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:11 Heat of formation + Delta-G solvation = -22.578434 kcal Electronic energy + Delta-G solvation = -31512.430893 eV Core-core repulsion = 27540.831180 eV Total energy + Delta-G solvation = -3971.599714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.85299 -40.05955 -38.26609 -36.50605 -35.69595 -33.21505 -32.86186 -31.18459 -30.35426 -29.69791 -26.88676 -26.16926 -25.93103 -25.37122 -24.05879 -22.29015 -21.19249 -20.40785 -20.34546 -18.87926 -17.96071 -17.48571 -16.80270 -16.65821 -16.22056 -15.57042 -15.05915 -15.05184 -14.74431 -14.09373 -13.89574 -13.75703 -13.62525 -13.49148 -13.41513 -13.20787 -13.06074 -12.91337 -12.70843 -12.27571 -12.09480 -11.99162 -11.90216 -11.70053 -11.62469 -11.30706 -11.23635 -10.94968 -10.89051 -10.78549 -10.51382 -10.31538 -10.19735 -9.95257 -9.77415 -9.69480 -9.54127 -9.28777 -8.96012 -8.52671 -8.35091 -6.66840 -5.82476 -3.30775 2.77129 2.88033 3.06275 3.35098 3.41092 3.47496 3.52469 4.22844 4.41547 4.44466 4.49631 4.65528 4.78461 4.90297 5.06085 5.16174 5.20187 5.26145 5.30744 5.42527 5.44542 5.52500 5.52823 5.58390 5.60221 5.67466 5.71931 5.76389 5.79765 5.86386 5.91897 5.93927 6.04289 6.05496 6.13519 6.23193 6.36268 6.46888 6.51759 6.72187 6.80252 6.94407 6.98068 7.24036 7.25585 7.59019 7.75774 8.02693 8.38813 8.42692 8.45058 9.17586 9.79091 10.37775 11.25817 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.005565 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.593555 B = 5030.381865 C = 6869.538762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 H 0.103 0.897 4 C 0.546 3.454 5 O -0.556 6.556 6 N -0.632 5.632 7 C 0.115 3.885 8 C -0.110 4.110 9 C 0.113 3.887 10 C -0.095 4.095 11 C -0.133 4.133 12 C 0.143 3.857 13 N -0.589 5.589 14 C -0.260 4.260 15 H 0.064 0.936 16 C 0.011 3.989 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.282 1.282 22 C 0.201 3.799 23 C 0.153 3.847 24 H 0.095 0.905 25 C -0.130 4.130 26 C -0.160 4.160 27 C 0.516 3.484 28 O -0.536 6.536 29 N -0.717 5.717 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.257 0.743 44 H 0.089 0.911 45 H 0.023 0.977 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.802 -6.620 3.457 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.121 0.879 4 C 0.336 3.664 5 O -0.436 6.436 6 N -0.365 5.365 7 C -0.007 4.007 8 C -0.112 4.112 9 C -0.010 4.010 10 C -0.133 4.133 11 C -0.172 4.172 12 C 0.017 3.983 13 N -0.311 5.311 14 C -0.389 4.389 15 H 0.081 0.919 16 C -0.189 4.189 17 N -0.542 5.542 18 Si 0.728 3.272 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.208 1.208 22 C 0.075 3.925 23 C 0.046 3.954 24 H 0.113 0.887 25 C -0.168 4.168 26 C -0.200 4.200 27 C 0.302 3.698 28 O -0.413 6.413 29 N -0.373 5.373 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.041 0.959 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.124 0.876 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -13.728 -7.094 4.003 15.963 hybrid contribution 0.389 0.361 0.320 0.619 sum -13.339 -6.734 4.323 15.555 Atomic orbital electron populations 1.21776 0.92127 1.02749 1.03224 1.21750 0.97912 1.01903 0.92986 0.87917 1.20012 0.78751 0.84443 0.83201 1.90631 1.44809 1.21956 1.86170 1.49939 1.53208 1.27919 1.05439 1.23239 0.95545 0.87394 0.94540 1.22978 0.99970 0.94193 0.94078 1.23261 1.00592 0.97150 0.79962 1.21292 0.98925 0.96915 0.96141 1.22013 0.99837 0.95325 1.00034 1.20899 0.91444 0.96895 0.89060 1.43958 1.69860 1.02037 1.15232 1.19045 1.05891 1.00387 1.13614 0.91868 1.25160 0.95147 0.98111 1.00516 1.69915 1.12318 1.33094 1.38879 0.86455 0.77513 0.80756 0.82515 1.20980 1.21421 1.20808 1.20489 0.88138 0.81922 1.01989 1.21394 0.80578 1.00310 0.93094 0.88721 1.22741 0.98457 0.98737 0.96819 1.22375 0.94006 1.00531 1.03066 1.20906 0.89710 0.79767 0.79452 1.90760 1.18941 1.66644 1.64928 1.46307 1.07762 1.38897 1.44285 0.90971 0.91553 0.91917 0.89286 0.90815 0.90641 0.90246 0.92061 0.93172 0.93054 0.92395 0.96513 0.92859 0.93323 0.89249 0.95852 0.88659 0.89615 0.88117 0.87649 0.74343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.83 37.16 0.33 -0.97 16 2 C -0.12 -1.58 2.26 -91.77 -0.21 -1.78 16 3 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 4 C 0.55 8.96 7.08 -10.99 -0.08 8.89 16 5 O -0.56 -10.49 15.72 5.55 0.09 -10.40 16 6 N -0.63 -10.18 3.48 -179.39 -0.62 -10.81 16 7 C 0.12 1.73 6.10 -3.17 -0.02 1.71 16 8 C -0.11 -1.81 0.87 -154.42 -0.13 -1.95 16 9 C 0.11 1.77 7.99 -3.05 -0.02 1.74 16 10 C -0.09 -1.35 5.07 -26.82 -0.14 -1.49 16 11 C -0.13 -2.00 6.01 -26.56 -0.16 -2.16 16 12 C 0.14 2.77 6.45 -3.75 -0.02 2.74 16 13 N -0.59 -13.66 2.99 -172.47 -0.52 -14.17 16 14 C -0.26 -6.75 9.58 -15.06 -0.14 -6.89 16 15 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 16 C 0.01 0.29 5.04 -17.43 -0.09 0.20 16 17 N -0.90 -25.98 11.13 55.49 0.62 -25.36 16 18 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.20 4.46 4.28 -3.81 -0.02 4.44 16 23 C 0.15 1.80 2.54 -67.01 -0.17 1.63 16 24 H 0.09 1.05 8.04 -51.93 -0.42 0.63 16 25 C -0.13 -1.13 6.53 -25.10 -0.16 -1.30 16 26 C -0.16 -1.86 6.86 -26.74 -0.18 -2.05 16 27 C 0.52 8.62 8.43 -10.86 -0.09 8.52 16 28 O -0.54 -11.52 18.03 5.55 0.10 -11.42 16 29 N -0.72 -10.94 5.38 -52.76 -0.28 -11.22 16 30 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 31 H 0.07 0.64 6.81 -51.93 -0.35 0.28 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 34 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.60 8.12 -51.92 -0.42 0.18 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 2.31 6.14 -51.93 -0.32 1.99 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.64 6.05 -51.92 -0.31 0.32 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.42 6.95 8.14 -40.82 -0.33 6.62 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -33.35 388.92 -9.44 -42.80 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.35 Total: 6.74 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -1.31 Total: 11.29 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.81 Total: -61.56 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.19 Total: -21.82 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.35 -9.44 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982029363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.218 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds