Wall clock time and date at job start Tue Mar 31 2020 19:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46623 * 2 1 4 4 C 1.50694 * 109.47093 * 239.99826 * 2 1 3 5 5 O 1.21287 * 119.99961 * 248.85899 * 4 2 1 6 6 N 1.34781 * 120.00442 * 68.85878 * 4 2 1 7 7 C 1.47671 * 134.44748 * 354.61179 * 6 4 2 8 8 C 1.53461 * 86.09199 * 155.77474 * 7 6 4 9 9 C 1.47909 * 134.54948 * 174.55285 * 6 4 2 10 10 C 1.52630 * 113.67259 * 137.82903 * 8 7 6 11 11 C 1.53187 * 109.34655 * 74.02087 * 10 8 7 12 12 C 1.53144 * 109.34928 * 59.06944 * 11 10 8 13 13 N 1.46897 * 109.09127 * 303.54154 * 12 11 10 14 14 C 1.36934 * 120.68759 * 235.31491 * 13 12 11 15 15 H 1.07993 * 119.99996 * 31.60168 * 14 13 12 16 16 C 1.38817 * 119.99921 * 211.59676 * 14 13 12 17 17 N 1.31617 * 119.99753 * 10.81451 * 16 14 13 18 18 Si 1.86793 * 120.00056 * 190.80944 * 16 14 13 19 19 H 1.48498 * 109.47212 * 60.00365 * 18 16 14 20 20 H 1.48504 * 109.47342 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47208 * 300.00397 * 18 16 14 22 22 C 1.47117 * 118.62231 * 55.34758 * 13 12 11 23 23 C 1.53001 * 109.47039 * 119.99587 * 2 1 3 24 24 H 1.08999 * 110.21558 * 59.52563 * 23 2 1 25 25 C 1.54485 * 110.24726 * 297.50123 * 23 2 1 26 26 C 1.54625 * 101.76736 * 266.41842 * 25 23 2 27 27 C 1.51284 * 104.19314 * 335.20255 * 26 25 23 28 28 O 1.21286 * 124.94010 * 196.27453 * 27 26 25 29 29 N 1.34420 * 110.11802 * 16.25404 * 27 26 25 30 30 H 1.09000 * 109.47146 * 305.52602 * 1 2 3 31 31 H 1.09000 * 109.47130 * 65.53088 * 1 2 3 32 32 H 1.08998 * 109.46798 * 185.53314 * 1 2 3 33 33 H 1.09001 * 113.79497 * 41.46094 * 7 6 4 34 34 H 1.08998 * 113.79580 * 270.09977 * 7 6 4 35 35 H 1.09001 * 113.68830 * 89.95589 * 9 6 4 36 36 H 1.09005 * 113.96738 * 318.52946 * 9 6 4 37 37 H 1.09001 * 109.49688 * 193.98184 * 10 8 7 38 38 H 1.09009 * 109.49422 * 314.05680 * 10 8 7 39 39 H 1.09002 * 109.48990 * 179.03196 * 11 10 8 40 40 H 1.08997 * 109.48992 * 299.10176 * 11 10 8 41 41 H 1.08995 * 109.53762 * 63.43333 * 12 11 10 42 42 H 1.08998 * 109.52984 * 183.58803 * 12 11 10 43 43 H 0.97002 * 120.00294 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.63734 * 188.92524 * 22 13 12 45 45 H 1.08996 * 109.64245 * 68.30420 * 22 13 12 46 46 H 1.09008 * 110.96566 * 24.53763 * 25 23 2 47 47 H 1.09001 * 110.96908 * 148.29692 * 25 23 2 48 48 H 1.08990 * 110.48772 * 216.52669 * 26 25 23 49 49 H 1.08999 * 110.48504 * 93.87495 * 26 25 23 50 50 H 0.96996 * 124.35228 * 180.38996 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5917 -1.7816 -1.1263 6 7 1.8602 -0.1556 -2.4466 7 6 1.1595 1.0447 -2.9457 8 6 2.1319 0.9904 -4.1317 9 6 2.2969 -0.5023 -3.8165 10 6 1.4703 1.2639 -5.4797 11 6 1.1569 2.7587 -5.5972 12 6 2.4551 3.5610 -5.4685 13 7 3.1071 3.2191 -4.1973 14 6 3.4309 4.1953 -3.2933 15 1 2.8201 5.0824 -3.2146 16 6 4.5442 4.0445 -2.4779 17 7 5.4058 3.0777 -2.7128 18 14 4.8196 5.2139 -1.0476 19 1 3.6727 5.1259 -0.1084 20 1 6.0703 4.8426 -0.3383 21 1 4.9350 6.6032 -1.5591 22 6 3.4056 1.8063 -3.9160 23 6 2.0401 -0.7212 1.2493 24 1 1.6765 -1.7486 1.2659 25 6 1.5873 0.0287 2.5218 26 6 2.8021 0.9449 2.7970 27 6 3.9624 0.2294 2.1409 28 8 5.1332 0.4612 2.3570 29 7 3.5071 -0.7008 1.2840 30 1 -0.3633 0.5971 0.8364 31 1 -0.3633 0.4257 -0.9354 32 1 -0.3633 -1.0229 0.0991 33 1 1.2865 1.9231 -2.3129 34 1 0.1202 0.8648 -3.2206 35 1 1.5962 -1.1445 -4.3502 36 1 3.3271 -0.8533 -3.8774 37 1 2.1460 0.9697 -6.2829 38 1 0.5456 0.6914 -5.5539 39 1 0.6999 2.9594 -6.5662 40 1 0.4693 3.0496 -4.8032 41 1 3.1194 3.3147 -6.2967 42 1 2.2281 4.6269 -5.4878 43 1 6.1840 2.9725 -2.1433 44 1 3.7378 1.7007 -2.8832 45 1 4.1848 1.4547 -4.5923 46 1 0.6903 0.6175 2.3291 47 1 1.4269 -0.6650 3.3471 48 1 2.9712 1.0423 3.8693 49 1 2.6519 1.9243 2.3428 50 1 4.0752 -1.2836 0.7563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982029363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:10 Heat of formation + Delta-G solvation = -46.330155 kcal Electronic energy + Delta-G solvation = -31513.460845 eV Core-core repulsion = 27540.831180 eV Total energy + Delta-G solvation = -3972.629666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05433 -41.32063 -39.62176 -37.82507 -37.24433 -34.74807 -34.14036 -32.19724 -32.03259 -31.16889 -27.97791 -27.57894 -27.15132 -27.05454 -25.05308 -23.94360 -22.44076 -21.62357 -21.52641 -20.10372 -19.44887 -18.69897 -18.55010 -17.89514 -17.42866 -16.83120 -16.72834 -16.28042 -16.22573 -15.74320 -15.25808 -15.15566 -14.93027 -14.80591 -14.60213 -14.35533 -14.31598 -14.09379 -13.80360 -13.61885 -13.42195 -13.18928 -13.10706 -12.87873 -12.76804 -12.72039 -12.57252 -12.48901 -12.33113 -12.19438 -12.02805 -11.80113 -11.76503 -11.46748 -11.23991 -11.02403 -11.01898 -10.62731 -10.52222 -10.18227 -9.62990 -8.62816 -7.90191 -5.39157 1.39888 1.39985 1.48308 1.49989 1.63070 1.87274 2.37690 2.45618 3.18959 3.25907 3.40507 3.47118 3.60912 3.70201 3.80733 4.00941 4.06543 4.10930 4.21085 4.27000 4.35152 4.35464 4.41174 4.46213 4.61111 4.63007 4.67538 4.68510 4.78085 4.83670 4.87602 4.93051 4.94746 5.07458 5.07822 5.12313 5.15882 5.21695 5.29928 5.34623 5.37481 5.49157 5.58870 5.67294 5.74577 5.76888 6.02532 6.37019 6.77955 7.11421 7.13655 7.14630 7.86081 8.38226 9.14150 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.005565 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.593555 B = 5030.381865 C = 6869.538762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 H 0.082 0.918 4 C 0.532 3.468 5 O -0.591 6.591 6 N -0.640 5.640 7 C 0.131 3.869 8 C -0.108 4.108 9 C 0.114 3.886 10 C -0.089 4.089 11 C -0.120 4.120 12 C 0.135 3.865 13 N -0.605 5.605 14 C -0.248 4.248 15 H 0.072 0.928 16 C -0.047 4.047 17 N -0.935 5.935 18 Si 0.949 3.051 19 H -0.267 1.267 20 H -0.313 1.313 21 H -0.270 1.270 22 C 0.214 3.786 23 C 0.146 3.854 24 H 0.106 0.894 25 C -0.110 4.110 26 C -0.153 4.153 27 C 0.497 3.503 28 O -0.601 6.601 29 N -0.722 5.722 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.006 0.994 42 H 0.053 0.947 43 H 0.241 0.759 44 H 0.044 0.956 45 H -0.018 1.018 46 H 0.128 0.872 47 H 0.114 0.886 48 H 0.121 0.879 49 H 0.105 0.895 50 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 -6.424 3.494 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 H 0.100 0.900 4 C 0.323 3.677 5 O -0.473 6.473 6 N -0.373 5.373 7 C 0.009 3.991 8 C -0.110 4.110 9 C -0.009 4.009 10 C -0.127 4.127 11 C -0.159 4.159 12 C 0.010 3.990 13 N -0.328 5.328 14 C -0.378 4.378 15 H 0.090 0.910 16 C -0.242 4.242 17 N -0.581 5.581 18 Si 0.778 3.222 19 H -0.192 1.192 20 H -0.241 1.241 21 H -0.195 1.195 22 C 0.088 3.912 23 C 0.040 3.960 24 H 0.124 0.876 25 C -0.147 4.147 26 C -0.193 4.193 27 C 0.285 3.715 28 O -0.483 6.483 29 N -0.374 5.374 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.000 1.000 46 H 0.146 0.854 47 H 0.132 0.868 48 H 0.139 0.861 49 H 0.123 0.877 50 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -19.225 -6.871 3.999 20.804 hybrid contribution 2.128 0.297 0.154 2.154 sum -17.097 -6.574 4.153 18.782 Atomic orbital electron populations 1.21815 0.88516 1.04216 1.04622 1.21790 1.00742 0.99959 0.91443 0.89972 1.20809 0.78239 0.84369 0.84260 1.90607 1.46233 1.23700 1.86719 1.50115 1.53277 1.28239 1.05662 1.23264 0.97107 0.86147 0.92586 1.22651 0.97758 0.93710 0.96879 1.23331 1.00116 0.96980 0.80485 1.21310 1.00442 0.97033 0.93871 1.21881 0.97028 0.94778 1.02205 1.21124 0.93244 0.97962 0.86643 1.44225 1.70025 1.01940 1.16580 1.19406 1.04815 1.00620 1.12988 0.91014 1.25812 0.95530 0.99673 1.03186 1.70131 1.12822 1.35391 1.39791 0.85601 0.76668 0.79599 0.80291 1.19223 1.24057 1.19497 1.20071 0.90278 0.82708 0.98152 1.21759 0.78237 1.01534 0.94422 0.87587 1.22849 0.97854 0.98381 0.95665 1.22432 0.92860 1.00345 1.03656 1.21956 0.90196 0.79872 0.79449 1.90705 1.21874 1.68598 1.67091 1.46602 1.09641 1.37935 1.43190 0.87852 0.91563 0.90720 0.91477 0.86167 0.86707 0.93262 0.92387 0.88748 0.89668 0.91629 0.97559 0.92888 0.95037 0.93728 1.00026 0.85375 0.86804 0.86062 0.87672 0.76047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.83 71.98 0.64 -1.28 16 2 C -0.12 -2.83 2.26 -11.54 -0.03 -2.85 16 3 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 4 C 0.53 17.41 7.08 87.65 0.62 18.03 16 5 O -0.59 -22.83 15.72 -3.05 -0.05 -22.88 16 6 N -0.64 -20.14 3.48 -839.86 -2.93 -23.07 16 7 C 0.13 3.58 6.10 86.30 0.53 4.11 16 8 C -0.11 -3.44 0.87 -52.04 -0.05 -3.48 16 9 C 0.11 3.46 7.99 86.25 0.69 4.15 16 10 C -0.09 -2.19 5.07 30.53 0.15 -2.04 16 11 C -0.12 -3.14 6.01 30.70 0.18 -2.96 16 12 C 0.14 5.07 6.45 86.35 0.56 5.63 16 13 N -0.60 -28.47 2.99 -699.56 -2.09 -30.56 16 14 C -0.25 -13.05 9.58 84.04 0.80 -12.25 16 15 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 16 C -0.05 -2.63 5.04 84.86 0.43 -2.20 16 17 N -0.94 -57.77 11.13 21.65 0.24 -57.53 16 18 Si 0.95 46.06 29.57 68.60 2.03 48.09 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 C 0.21 9.94 4.28 86.19 0.37 10.31 16 23 C 0.15 3.21 2.54 45.45 0.12 3.33 16 24 H 0.11 2.14 8.04 -2.39 -0.02 2.12 16 25 C -0.11 -1.52 6.53 31.65 0.21 -1.31 16 26 C -0.15 -3.35 6.86 30.59 0.21 -3.14 16 27 C 0.50 17.32 8.43 87.90 0.74 18.06 16 28 O -0.60 -27.76 18.03 -3.05 -0.05 -27.81 16 29 N -0.72 -22.97 5.38 -439.42 -2.37 -25.33 16 30 H 0.10 0.85 6.43 -2.39 -0.02 0.84 16 31 H 0.07 0.98 6.81 -2.39 -0.02 0.96 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 34 H 0.12 2.27 8.07 -2.39 -0.02 2.25 16 35 H 0.12 2.64 8.09 -2.39 -0.02 2.62 16 36 H 0.05 1.78 8.09 -2.38 -0.02 1.76 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.64 8.12 -2.38 -0.02 1.62 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.67 7.93 -2.39 -0.02 1.65 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 43 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.04 2.47 6.14 -2.39 -0.01 2.45 16 45 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 46 H 0.13 0.99 6.05 -2.38 -0.01 0.97 16 47 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 48 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.40 14.59 8.14 -92.71 -0.75 13.84 16 Total: -1.00 -82.60 388.92 1.14 -81.46 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.18 Total: 25.54 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 6.17 Total: 32.10 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -7.14 Total: -136.49 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.10 Total: -50.69 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -82.60 1.14 -81.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982029363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.129 kcal (2) G-P(sol) polarization free energy of solvation -82.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds