Wall clock time and date at job start Tue Mar 31 2020 18:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47381 * 2 1 4 4 C 1.50701 * 109.47275 * 120.00309 * 2 1 3 5 5 N 1.30015 * 127.33553 * 300.01767 * 4 2 1 6 6 O 1.20652 * 112.30906 * 179.97438 * 5 4 2 7 7 C 1.33492 * 113.15268 * 0.02562 * 6 5 4 8 8 C 1.37358 * 106.34356 * 359.74014 * 7 6 5 9 9 C 1.47394 * 128.56944 * 180.25729 * 8 7 6 10 10 O 1.21612 * 120.00311 * 180.13357 * 9 8 7 11 11 N 1.34775 * 120.00039 * 0.13906 * 9 8 7 12 12 C 1.46507 * 120.00144 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47131 * 34.99800 * 12 11 9 14 14 C 1.52999 * 109.46650 * 274.99499 * 12 11 9 15 15 C 1.53003 * 109.46740 * 154.99722 * 12 11 9 16 16 C 1.53042 * 109.46201 * 300.02270 * 15 12 11 17 17 C 1.53188 * 109.31318 * 178.60424 * 16 15 12 18 18 N 1.46929 * 108.76513 * 54.65423 * 17 16 15 19 19 C 1.36941 * 120.62987 * 126.40135 * 18 17 16 20 20 H 1.08003 * 119.99854 * 332.61866 * 19 18 17 21 21 C 1.38805 * 120.00030 * 152.60741 * 19 18 17 22 22 N 1.31624 * 120.00137 * 159.34599 * 21 19 18 23 23 Si 1.86803 * 120.00235 * 339.35296 * 21 19 18 24 24 H 1.48491 * 109.47276 * 92.93630 * 23 21 19 25 25 H 1.48500 * 109.47414 * 212.94207 * 23 21 19 26 26 H 1.48502 * 109.46924 * 332.93942 * 23 21 19 27 27 C 1.46925 * 118.74081 * 306.38772 * 18 17 16 28 28 C 1.53045 * 109.45636 * 179.97438 * 15 12 11 29 29 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47151 * 60.00107 * 1 2 3 31 31 H 1.09002 * 109.46868 * 299.99964 * 1 2 3 32 32 H 1.09004 * 109.46719 * 239.99520 * 2 1 3 33 33 H 1.08992 * 109.47244 * 60.00267 * 3 2 1 34 34 H 1.08998 * 109.47207 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46619 * 300.00244 * 3 2 1 36 36 H 1.08004 * 126.83010 * 179.97438 * 7 6 5 37 37 H 0.96999 * 119.99922 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.46530 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.47153 * 299.99777 * 14 12 11 40 40 H 1.08991 * 109.47104 * 60.00500 * 14 12 11 41 41 H 1.08994 * 109.46513 * 60.00120 * 15 12 11 42 42 H 1.08999 * 109.49367 * 298.57021 * 16 15 12 43 43 H 1.09002 * 109.49434 * 58.66808 * 16 15 12 44 44 H 1.08994 * 109.59962 * 294.87212 * 17 16 15 45 45 H 1.08999 * 109.70606 * 174.50734 * 17 16 15 46 46 H 0.96997 * 120.00138 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.58295 * 293.81415 * 27 18 17 48 48 H 1.09003 * 109.70392 * 173.46258 * 27 18 17 49 49 H 1.09003 * 109.49597 * 301.33837 * 28 15 12 50 50 H 1.08998 * 109.49977 * 61.43350 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8076 -0.3933 2.4711 6 8 2.3432 -1.1514 3.2419 7 6 3.0295 -2.1210 2.6329 8 6 2.8768 -1.9138 1.2836 9 6 3.4253 -2.7015 0.1651 10 8 3.1913 -2.3731 -0.9822 11 7 4.1863 -3.7858 0.4138 12 6 4.7320 -4.5684 -0.6980 13 1 4.9822 -3.9017 -1.5232 14 6 3.6904 -5.5878 -1.1636 15 6 5.9923 -5.3020 -0.2349 16 6 7.0337 -4.2821 0.2314 17 6 8.2805 -5.0214 0.7268 18 7 8.7505 -5.9204 -0.3361 19 6 10.0467 -5.8650 -0.7743 20 1 10.6020 -4.9415 -0.7022 21 6 10.6468 -6.9957 -1.3109 22 7 11.7026 -6.8747 -2.0875 23 14 9.9560 -8.6893 -0.9311 24 1 8.9909 -9.0791 -1.9901 25 1 11.0642 -9.6767 -0.8834 26 1 9.2639 -8.6583 0.3824 27 6 7.8034 -6.8802 -0.9197 28 6 6.5618 -6.1199 -1.3963 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9562 -0.8900 36 1 3.5900 -2.9133 3.1068 37 1 4.3732 -4.0475 1.3289 38 1 4.0967 -6.1703 -1.9905 39 1 3.4403 -6.2544 -0.3384 40 1 2.7927 -5.0652 -1.4935 41 1 5.7420 -5.9686 0.5903 42 1 7.3029 -3.6310 -0.6002 43 1 6.6191 -3.6840 1.0430 44 1 8.0320 -5.6035 1.6142 45 1 9.0625 -4.3018 0.9691 46 1 12.1218 -7.6648 -2.4628 47 1 7.5160 -7.6138 -0.1665 48 1 8.2682 -7.3874 -1.7651 49 1 5.8114 -6.8301 -1.7435 50 1 6.8357 -5.4513 -2.2124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997140206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:19 Heat of formation + Delta-G solvation = 29.332186 kcal Electronic energy + Delta-G solvation = -29696.650470 eV Core-core repulsion = 25727.301769 eV Total energy + Delta-G solvation = -3969.348700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.23057 -40.07384 -38.26207 -36.59276 -35.54747 -33.49803 -32.58213 -31.97271 -31.32520 -30.43332 -29.33230 -27.46659 -25.78690 -25.04023 -23.93266 -22.83659 -22.72853 -21.02217 -20.83133 -20.15439 -19.54281 -18.40634 -17.98510 -16.96364 -16.67165 -16.28839 -15.43562 -15.12550 -15.04065 -14.87805 -14.24047 -14.20560 -14.00753 -13.74318 -13.64980 -13.57659 -13.36101 -13.03739 -12.70248 -12.52680 -12.46820 -12.08479 -12.04741 -11.92103 -11.65460 -11.62553 -11.44134 -11.29382 -11.11282 -10.85529 -10.54578 -10.53236 -10.23963 -10.19448 -10.15818 -10.08169 -9.90600 -9.72378 -9.44530 -9.18556 -8.64000 -6.99844 -5.96625 -3.32472 0.73804 1.50656 2.57399 2.98344 3.00165 3.29182 3.45755 3.48168 3.68996 3.90898 4.49502 4.50606 4.58045 4.73027 4.81542 4.81952 4.88112 4.91840 5.01741 5.11653 5.15317 5.32898 5.36897 5.40388 5.43424 5.49870 5.51338 5.61193 5.65694 5.73678 5.75666 5.80670 5.90844 5.95719 6.02633 6.06467 6.09079 6.15108 6.22100 6.33768 6.42867 6.46997 6.60336 6.62664 6.67394 6.93286 7.27149 7.88339 7.94689 7.98007 8.31251 8.92560 9.70373 10.07973 11.19452 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022657 B = 0.002441 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.544726 B =11465.932471 C =11633.531081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.142 4.142 4 C 0.079 3.921 5 N -0.355 5.355 6 O 0.097 5.903 7 C -0.008 4.008 8 C -0.250 4.250 9 C 0.595 3.405 10 O -0.528 6.528 11 N -0.713 5.713 12 C 0.147 3.853 13 H 0.091 0.909 14 C -0.164 4.164 15 C -0.086 4.086 16 C -0.128 4.128 17 C 0.149 3.851 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.085 0.915 21 C 0.022 3.978 22 N -0.908 5.908 23 Si 0.884 3.116 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.126 3.874 28 C -0.127 4.127 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.226 0.774 37 H 0.397 0.603 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.020 0.980 45 H 0.062 0.938 46 H 0.262 0.738 47 H 0.024 0.976 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 9.225 8.379 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.200 4.200 4 C -0.084 4.084 5 N -0.061 5.061 6 O 0.038 5.962 7 C -0.091 4.091 8 C -0.258 4.258 9 C 0.381 3.619 10 O -0.405 6.405 11 N -0.363 5.363 12 C 0.043 3.957 13 H 0.109 0.891 14 C -0.222 4.222 15 C -0.105 4.105 16 C -0.167 4.167 17 C 0.023 3.977 18 N -0.330 5.330 19 C -0.388 4.388 20 H 0.102 0.898 21 C -0.177 4.177 22 N -0.551 5.551 23 Si 0.714 3.286 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.196 1.196 27 C 0.001 3.999 28 C -0.167 4.167 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.231 0.769 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.825 10.343 8.085 26.331 hybrid contribution 0.290 -1.851 0.199 1.884 sum -22.535 8.492 8.284 25.467 Atomic orbital electron populations 1.21810 0.93461 1.02219 1.02461 1.19831 0.96189 0.95823 0.92746 1.21814 1.01467 0.94304 1.02449 1.24846 0.96324 0.93472 0.93790 1.73628 1.16871 1.13728 1.01909 1.84591 1.48210 1.29519 1.33906 1.26430 0.96213 0.94342 0.92077 1.22422 1.08046 1.01193 0.94117 1.16817 0.78270 0.79777 0.87045 1.90779 1.59015 1.69297 1.21428 1.45945 1.51717 1.28069 1.10580 1.21188 0.92883 0.92615 0.89017 0.89081 1.22219 0.99162 0.99005 1.01806 1.21345 0.92938 0.97088 0.99093 1.22051 0.96629 0.97474 1.00560 1.20905 0.94081 0.92697 0.90018 1.44350 1.07803 1.41057 1.39740 1.18922 0.87263 0.96428 1.36186 0.89778 1.25287 0.96041 0.97704 0.98625 1.69840 1.23651 1.29353 1.32296 0.86938 0.77067 0.85633 0.78933 1.21625 1.23216 1.19648 1.21324 0.89809 0.91909 0.96902 1.22094 0.98157 0.99137 0.97292 0.92521 0.91458 0.92287 0.86853 0.92280 0.92358 0.91450 0.75822 0.76887 0.90833 0.92610 0.92463 0.91271 0.91763 0.93023 0.96199 0.91961 0.92772 0.95847 0.90889 0.92260 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.03 -0.27 3.33 -91.77 -0.31 -0.57 16 3 C -0.14 -1.26 9.18 37.16 0.34 -0.92 16 4 C 0.08 0.86 6.09 -79.76 -0.49 0.37 16 5 N -0.36 -3.86 12.01 34.78 0.42 -3.44 16 6 O 0.10 0.87 11.06 18.65 0.21 1.08 16 7 C -0.01 -0.06 11.85 30.41 0.36 0.30 16 8 C -0.25 -2.52 6.47 -102.89 -0.67 -3.18 16 9 C 0.60 6.97 7.78 -12.53 -0.10 6.87 16 10 O -0.53 -7.93 14.92 5.27 0.08 -7.85 16 11 N -0.71 -7.01 4.36 -54.89 -0.24 -7.25 16 12 C 0.15 1.72 2.16 -67.93 -0.15 1.58 16 13 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 14 C -0.16 -1.77 9.13 37.16 0.34 -1.43 16 15 C -0.09 -1.13 1.79 -90.57 -0.16 -1.29 16 16 C -0.13 -1.87 5.22 -26.61 -0.14 -2.00 16 17 C 0.15 2.72 6.52 -3.71 -0.02 2.70 16 18 N -0.61 -13.79 2.77 -172.33 -0.48 -14.27 16 19 C -0.26 -7.12 10.03 -15.06 -0.15 -7.27 16 20 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 21 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 22 N -0.91 -27.64 13.97 55.49 0.78 -26.86 16 23 Si 0.88 21.97 24.35 -169.99 -4.14 17.83 16 24 H -0.29 -6.89 6.62 56.52 0.37 -6.52 16 25 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 26 H -0.27 -6.58 6.63 56.52 0.37 -6.21 16 27 C 0.13 2.60 4.20 -3.71 -0.02 2.58 16 28 C -0.13 -2.04 5.04 -26.61 -0.13 -2.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 1.31 6.29 -51.93 -0.33 0.98 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.23 0.49 7.68 -52.48 -0.40 0.08 16 37 H 0.40 2.78 7.57 -40.82 -0.31 2.47 16 38 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.61 7.40 -51.93 -0.38 0.22 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.02 0.48 7.07 -51.93 -0.37 0.11 16 48 H 0.07 1.68 4.50 -51.93 -0.23 1.45 16 49 H 0.06 0.82 6.36 -51.93 -0.33 0.49 16 50 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -33.21 389.84 -6.72 -39.92 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.18 Total: -0.26 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.04 Total: -4.77 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.48 Total: -51.83 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: 0.28 Total: -6.77 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.21 -6.72 -39.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997140206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.256 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds