Wall clock time and date at job start Tue Mar 31 2020 18:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47419 * 2 1 4 4 C 1.50708 * 109.46971 * 120.00156 * 2 1 3 5 5 C 1.35312 * 126.66878 * 119.99939 * 4 2 1 6 6 C 1.42261 * 103.92437 * 180.02562 * 5 4 2 7 7 C 1.48334 * 126.93966 * 180.02562 * 6 5 4 8 8 O 1.21495 * 120.00135 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99989 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00155 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46803 * 34.99873 * 10 9 7 12 12 C 1.52998 * 109.46790 * 274.99779 * 10 9 7 13 13 C 1.52998 * 109.46990 * 154.99545 * 10 9 7 14 14 C 1.53034 * 109.46431 * 300.06610 * 13 10 9 15 15 C 1.53190 * 109.31587 * 178.61331 * 14 13 10 16 16 N 1.46925 * 108.77214 * 54.64281 * 15 14 13 17 17 C 1.36937 * 120.63459 * 126.41292 * 16 15 14 18 18 H 1.08003 * 120.00035 * 207.66401 * 17 16 15 19 19 C 1.38810 * 120.00060 * 27.66053 * 17 16 15 20 20 N 1.31619 * 119.99771 * 17.37101 * 19 17 16 21 21 Si 1.86793 * 120.00149 * 197.36796 * 19 17 16 22 22 H 1.48506 * 109.47451 * 89.99829 * 21 19 17 23 23 H 1.48497 * 109.47460 * 210.00138 * 21 19 17 24 24 H 1.48501 * 109.47329 * 330.00155 * 21 19 17 25 25 C 1.46934 * 118.73700 * 306.38660 * 16 15 14 26 26 C 1.53044 * 109.45744 * 180.02562 * 13 10 9 27 27 N 1.30986 * 106.12251 * 359.97438 * 6 5 4 28 28 O 1.20907 * 111.43963 * 359.70412 * 27 6 5 29 29 H 1.09001 * 109.46660 * 60.00434 * 1 2 3 30 30 H 1.09000 * 109.47134 * 300.00027 * 1 2 3 31 31 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47448 * 239.99534 * 2 1 3 33 33 H 1.08996 * 109.47201 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47112 * 299.99922 * 3 2 1 35 35 H 1.09000 * 109.46990 * 59.99885 * 3 2 1 36 36 H 1.08006 * 128.03611 * 0.02562 * 5 4 2 37 37 H 0.97004 * 120.00291 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47070 * 60.00211 * 12 10 9 39 39 H 1.09005 * 109.46524 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.46821 * 299.99458 * 12 10 9 41 41 H 1.09001 * 109.46270 * 60.03087 * 13 10 9 42 42 H 1.09005 * 109.50171 * 298.57167 * 14 13 10 43 43 H 1.09002 * 109.49904 * 58.66766 * 14 13 10 44 44 H 1.08990 * 109.58883 * 294.85161 * 15 14 13 45 45 H 1.09003 * 109.58727 * 174.41729 * 15 14 13 46 46 H 0.97001 * 119.99995 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.58684 * 293.82839 * 25 16 15 48 48 H 1.08999 * 109.58732 * 173.39905 * 25 16 15 49 49 H 1.09002 * 109.49685 * 301.33702 * 26 13 10 50 50 H 1.08998 * 109.50103 * 61.42957 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8133 -1.8150 1.2637 6 6 2.9909 -2.0672 2.6524 7 6 3.7708 -3.1698 3.2657 8 8 4.3416 -3.9764 2.5588 9 7 3.8455 -3.2776 4.6070 10 6 4.6154 -4.3670 5.2127 11 1 5.4891 -4.5804 4.5970 12 6 3.7403 -5.6184 5.3078 13 6 5.0681 -3.9535 6.6145 14 6 5.9421 -2.7008 6.5193 15 6 6.3649 -2.2697 7.9271 16 7 7.0116 -3.4071 8.5956 17 6 8.2587 -3.2760 9.1458 18 1 8.9064 -4.1365 9.2267 19 6 8.6904 -2.0373 9.5996 20 7 7.8177 -1.0776 9.8230 21 14 10.5097 -1.7322 9.8933 22 1 11.1324 -1.2157 8.6479 23 1 10.6752 -0.7342 10.9803 24 1 11.1680 -3.0044 10.2850 25 6 6.2944 -4.6878 8.6631 26 6 5.8729 -5.0914 7.2467 27 7 2.3274 -1.1284 3.2803 28 8 1.7973 -0.3675 2.5045 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8935 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 3.2098 -2.3750 0.4295 37 1 3.3895 -2.6338 5.1715 38 1 3.4178 -5.9129 4.3091 39 1 4.3133 -6.4290 5.7580 40 1 2.8666 -5.4048 5.9236 41 1 4.1943 -3.7405 7.2303 42 1 6.8287 -2.9200 5.9242 43 1 5.3762 -1.8974 6.0475 44 1 5.4863 -1.9635 8.4948 45 1 7.0668 -1.4386 7.8595 46 1 8.1194 -0.2118 10.1398 47 1 5.4100 -4.5787 9.2908 48 1 6.9498 -5.4520 9.0810 49 1 5.2578 -5.9901 7.2928 50 1 6.7601 -5.2878 6.6447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997249793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:59 Heat of formation + Delta-G solvation = 25.250918 kcal Electronic energy + Delta-G solvation = -29245.106206 eV Core-core repulsion = 25275.580529 eV Total energy + Delta-G solvation = -3969.525678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.32176 -39.93205 -37.96010 -36.52870 -35.38664 -34.20499 -32.90413 -31.27803 -30.70826 -30.22480 -28.82660 -27.67209 -25.69123 -25.08074 -23.51969 -23.14165 -22.17294 -21.93976 -20.50160 -20.05249 -19.01477 -17.99229 -17.60613 -17.04530 -16.61413 -16.11728 -15.50337 -15.06308 -14.78303 -14.74261 -14.17035 -13.98058 -13.83245 -13.73417 -13.50921 -13.38637 -13.33344 -12.95469 -12.68889 -12.39755 -12.28126 -12.09282 -11.88058 -11.78208 -11.68909 -11.53880 -11.35025 -11.21859 -10.95923 -10.69549 -10.66596 -10.44417 -10.33677 -10.18130 -10.15064 -9.87932 -9.74881 -9.52202 -9.46882 -9.02583 -8.44753 -6.65472 -5.76862 -3.18812 0.92251 1.43289 2.63108 2.90691 3.08278 3.39276 3.46163 3.47147 3.77546 4.06379 4.38115 4.51512 4.53612 4.67675 4.80398 4.90735 5.04537 5.11745 5.14252 5.19662 5.31918 5.32259 5.37184 5.39506 5.46391 5.50254 5.61342 5.62580 5.71757 5.72169 5.76323 5.80832 5.95929 6.08496 6.10376 6.26460 6.32189 6.41337 6.56437 6.62253 6.69967 6.78603 6.84687 7.00073 7.34621 7.41240 7.67508 7.79609 7.81527 8.04541 8.47165 9.23491 9.87306 10.43886 11.31537 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002448 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.450197 B =11435.002163 C =12651.470975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.152 4.152 4 C -0.028 4.028 5 C -0.182 4.182 6 C -0.023 4.023 7 C 0.598 3.402 8 O -0.527 6.527 9 N -0.701 5.701 10 C 0.143 3.857 11 H 0.089 0.911 12 C -0.163 4.163 13 C -0.084 4.084 14 C -0.134 4.134 15 C 0.172 3.828 16 N -0.592 5.592 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.146 3.854 26 C -0.125 4.125 27 N -0.330 5.330 28 O 0.125 5.875 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.180 0.820 37 H 0.406 0.594 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.017 0.983 45 H 0.087 0.913 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 0.688 -20.028 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 C -0.210 4.210 4 C -0.092 4.092 5 C -0.204 4.204 6 C -0.182 4.182 7 C 0.381 3.619 8 O -0.402 6.402 9 N -0.352 5.352 10 C 0.040 3.960 11 H 0.107 0.893 12 C -0.221 4.221 13 C -0.104 4.104 14 C -0.174 4.174 15 C 0.046 3.954 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.019 3.981 26 C -0.165 4.165 27 N -0.030 5.030 28 O 0.050 5.950 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.197 0.803 37 H 0.241 0.759 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.797 0.469 -19.094 24.786 hybrid contribution 0.942 0.240 -0.253 1.005 sum -14.855 0.709 -19.346 24.402 Atomic orbital electron populations 1.21906 0.92991 1.02818 1.03169 1.19826 0.96823 0.96239 0.90178 1.21909 1.01856 0.94041 1.03178 1.24501 1.00304 0.97101 0.87254 1.22432 1.02611 0.98784 0.96602 1.23570 1.03036 0.98697 0.92912 1.16865 0.79843 0.82573 0.82613 1.90787 1.45757 1.41839 1.61779 1.46006 1.52166 1.31384 1.05604 1.21274 0.94041 0.85479 0.95208 0.89301 1.22217 1.00190 0.97810 1.01856 1.21342 0.98753 0.97448 0.92814 1.22232 0.98280 0.95382 1.01476 1.20761 0.96426 0.91324 0.86916 1.44067 1.16814 1.06747 1.63905 1.19202 0.90073 0.95178 1.33572 0.91682 1.25033 0.97794 0.97943 0.99020 1.70037 1.32005 1.04328 1.48417 0.86294 0.85381 0.77710 0.77426 1.21490 1.21793 1.20435 1.20893 0.95118 0.89555 0.92493 1.22085 0.98964 0.95934 0.99501 1.74213 1.09488 1.02457 1.16820 1.84763 1.54584 1.42133 1.13569 0.91153 0.91621 0.92023 0.87706 0.91904 0.91149 0.91584 0.80297 0.75852 0.92646 0.90809 0.92528 0.91367 0.92656 0.93589 0.96540 0.89512 0.93685 0.96534 0.92747 0.92603 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.18 37.16 0.34 -0.33 16 2 C -0.01 -0.06 3.34 -91.77 -0.31 -0.37 16 3 C -0.15 -0.74 9.18 37.15 0.34 -0.40 16 4 C -0.03 -0.25 5.98 -35.35 -0.21 -0.46 16 5 C -0.18 -1.91 10.91 -39.08 -0.43 -2.34 16 6 C -0.02 -0.30 7.19 -82.53 -0.59 -0.90 16 7 C 0.60 9.03 7.81 -12.11 -0.09 8.93 16 8 O -0.53 -9.19 16.62 5.37 0.09 -9.10 16 9 N -0.70 -9.97 4.36 -54.59 -0.24 -10.21 16 10 C 0.14 2.10 2.16 -67.93 -0.15 1.95 16 11 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 12 C -0.16 -2.07 9.13 37.16 0.34 -1.73 16 13 C -0.08 -1.38 1.79 -90.58 -0.16 -1.54 16 14 C -0.13 -2.59 5.22 -26.62 -0.14 -2.73 16 15 C 0.17 4.12 5.31 -3.71 -0.02 4.10 16 16 N -0.59 -14.92 2.99 -172.32 -0.52 -15.43 16 17 C -0.25 -6.95 9.59 -15.06 -0.14 -7.09 16 18 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 19 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 20 N -0.90 -26.52 11.19 55.49 0.62 -25.90 16 21 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 26 C -0.13 -2.11 5.04 -26.61 -0.13 -2.25 16 27 N -0.33 -4.26 11.84 33.29 0.39 -3.87 16 28 O 0.13 1.37 11.18 17.25 0.19 1.56 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.41 5.46 8.14 -40.82 -0.33 5.13 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.87 6.40 -51.93 -0.33 0.54 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.82 7.40 -51.93 -0.38 0.44 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 49 H 0.06 0.79 6.36 -51.93 -0.33 0.46 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -32.03 400.40 -8.31 -40.34 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.39 Total: 1.80 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.47 Total: -2.20 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.26 Total: -55.40 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.28 Total: -7.54 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.03 -8.31 -40.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997249793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.588 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds