Wall clock time and date at job start Tue Mar 31 2020 18:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47419 * 2 1 4 4 C 1.50708 * 109.46971 * 120.00156 * 2 1 3 5 5 C 1.35312 * 126.66878 * 119.99939 * 4 2 1 6 6 C 1.42261 * 103.92437 * 180.02562 * 5 4 2 7 7 C 1.48334 * 126.93966 * 180.02562 * 6 5 4 8 8 O 1.21495 * 120.00135 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99989 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00155 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46803 * 34.99873 * 10 9 7 12 12 C 1.52998 * 109.46790 * 274.99779 * 10 9 7 13 13 C 1.52998 * 109.46990 * 154.99545 * 10 9 7 14 14 C 1.53034 * 109.46431 * 300.06610 * 13 10 9 15 15 C 1.53190 * 109.31587 * 178.61331 * 14 13 10 16 16 N 1.46925 * 108.77214 * 54.64281 * 15 14 13 17 17 C 1.36937 * 120.63459 * 126.41292 * 16 15 14 18 18 H 1.08003 * 120.00035 * 207.66401 * 17 16 15 19 19 C 1.38810 * 120.00060 * 27.66053 * 17 16 15 20 20 N 1.31619 * 119.99771 * 17.37101 * 19 17 16 21 21 Si 1.86793 * 120.00149 * 197.36796 * 19 17 16 22 22 H 1.48506 * 109.47451 * 89.99829 * 21 19 17 23 23 H 1.48497 * 109.47460 * 210.00138 * 21 19 17 24 24 H 1.48501 * 109.47329 * 330.00155 * 21 19 17 25 25 C 1.46934 * 118.73700 * 306.38660 * 16 15 14 26 26 C 1.53044 * 109.45744 * 180.02562 * 13 10 9 27 27 N 1.30986 * 106.12251 * 359.97438 * 6 5 4 28 28 O 1.20907 * 111.43963 * 359.70412 * 27 6 5 29 29 H 1.09001 * 109.46660 * 60.00434 * 1 2 3 30 30 H 1.09000 * 109.47134 * 300.00027 * 1 2 3 31 31 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47448 * 239.99534 * 2 1 3 33 33 H 1.08996 * 109.47201 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47112 * 299.99922 * 3 2 1 35 35 H 1.09000 * 109.46990 * 59.99885 * 3 2 1 36 36 H 1.08006 * 128.03611 * 0.02562 * 5 4 2 37 37 H 0.97004 * 120.00291 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47070 * 60.00211 * 12 10 9 39 39 H 1.09005 * 109.46524 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.46821 * 299.99458 * 12 10 9 41 41 H 1.09001 * 109.46270 * 60.03087 * 13 10 9 42 42 H 1.09005 * 109.50171 * 298.57167 * 14 13 10 43 43 H 1.09002 * 109.49904 * 58.66766 * 14 13 10 44 44 H 1.08990 * 109.58883 * 294.85161 * 15 14 13 45 45 H 1.09003 * 109.58727 * 174.41729 * 15 14 13 46 46 H 0.97001 * 119.99995 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.58684 * 293.82839 * 25 16 15 48 48 H 1.08999 * 109.58732 * 173.39905 * 25 16 15 49 49 H 1.09002 * 109.49685 * 301.33702 * 26 13 10 50 50 H 1.08998 * 109.50103 * 61.42957 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8133 -1.8150 1.2637 6 6 2.9909 -2.0672 2.6524 7 6 3.7708 -3.1698 3.2657 8 8 4.3416 -3.9764 2.5588 9 7 3.8455 -3.2776 4.6070 10 6 4.6154 -4.3670 5.2127 11 1 5.4891 -4.5804 4.5970 12 6 3.7403 -5.6184 5.3078 13 6 5.0681 -3.9535 6.6145 14 6 5.9421 -2.7008 6.5193 15 6 6.3649 -2.2697 7.9271 16 7 7.0116 -3.4071 8.5956 17 6 8.2587 -3.2760 9.1458 18 1 8.9064 -4.1365 9.2267 19 6 8.6904 -2.0373 9.5996 20 7 7.8177 -1.0776 9.8230 21 14 10.5097 -1.7322 9.8933 22 1 11.1324 -1.2157 8.6479 23 1 10.6752 -0.7342 10.9803 24 1 11.1680 -3.0044 10.2850 25 6 6.2944 -4.6878 8.6631 26 6 5.8729 -5.0914 7.2467 27 7 2.3274 -1.1284 3.2803 28 8 1.7973 -0.3675 2.5045 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8935 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 3.2098 -2.3750 0.4295 37 1 3.3895 -2.6338 5.1715 38 1 3.4178 -5.9129 4.3091 39 1 4.3133 -6.4290 5.7580 40 1 2.8666 -5.4048 5.9236 41 1 4.1943 -3.7405 7.2303 42 1 6.8287 -2.9200 5.9242 43 1 5.3762 -1.8974 6.0475 44 1 5.4863 -1.9635 8.4948 45 1 7.0668 -1.4386 7.8595 46 1 8.1194 -0.2118 10.1398 47 1 5.4100 -4.5787 9.2908 48 1 6.9498 -5.4520 9.0810 49 1 5.2578 -5.9901 7.2928 50 1 6.7601 -5.2878 6.6447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997249793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:58 Heat of formation + Delta-G solvation = 6.588632 kcal Electronic energy + Delta-G solvation = -29245.915464 eV Core-core repulsion = 25275.580529 eV Total energy + Delta-G solvation = -3970.334935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -46.21542 -41.15866 -39.47732 -37.05606 -36.89135 -35.17970 -34.54544 -32.71379 -31.88673 -31.69185 -30.33009 -28.01598 -27.24806 -26.39716 -24.58588 -24.22136 -23.64880 -23.13563 -21.82776 -21.29684 -20.46388 -18.89687 -18.75779 -18.35362 -17.93790 -17.26631 -16.85931 -16.16102 -16.13102 -15.80974 -15.50508 -15.33362 -15.01423 -14.92764 -14.82501 -14.51738 -14.40090 -14.11858 -14.04670 -13.64238 -13.25289 -13.11612 -13.01306 -12.90574 -12.77665 -12.71312 -12.44407 -12.36336 -12.21242 -12.16545 -11.99679 -11.85037 -11.80354 -11.61793 -11.59042 -11.51685 -11.17213 -11.11628 -10.55827 -10.51359 -10.25737 -8.69860 -7.89119 -5.33835 -0.01703 0.61134 1.43854 1.45775 1.54249 1.74370 1.96804 1.99977 2.49304 2.82114 3.24538 3.34970 3.61914 3.69957 3.81955 3.90304 3.98468 3.99030 4.07161 4.15036 4.31508 4.34993 4.41541 4.51027 4.53349 4.56029 4.70910 4.75353 4.83570 4.83802 4.86424 4.93246 4.97619 4.98862 5.00570 5.04957 5.14282 5.15542 5.24471 5.33822 5.35879 5.38713 5.39232 5.40572 5.52182 5.63596 5.73564 6.22338 6.37660 6.83419 6.98530 7.13285 7.85693 8.36674 9.17027 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002448 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.450197 B =11435.002163 C =12651.470975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.010 4.010 3 C -0.152 4.152 4 C -0.010 4.010 5 C -0.193 4.193 6 C -0.046 4.046 7 C 0.597 3.403 8 O -0.555 6.555 9 N -0.698 5.698 10 C 0.152 3.848 11 H 0.073 0.927 12 C -0.156 4.156 13 C -0.074 4.074 14 C -0.119 4.119 15 C 0.179 3.821 16 N -0.612 5.612 17 C -0.260 4.260 18 H 0.067 0.933 19 C -0.054 4.054 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.140 3.860 26 C -0.114 4.114 27 N -0.348 5.348 28 O 0.127 5.873 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.194 0.806 37 H 0.410 0.590 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.056 0.944 44 H -0.002 1.002 45 H 0.048 0.952 46 H 0.249 0.751 47 H 0.018 0.982 48 H 0.055 0.945 49 H 0.094 0.906 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.207 -0.020 -21.803 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 C -0.210 4.210 4 C -0.074 4.074 5 C -0.215 4.215 6 C -0.204 4.204 7 C 0.382 3.618 8 O -0.432 6.432 9 N -0.349 5.349 10 C 0.048 3.952 11 H 0.091 0.909 12 C -0.213 4.213 13 C -0.093 4.093 14 C -0.159 4.159 15 C 0.053 3.947 16 N -0.336 5.336 17 C -0.391 4.391 18 H 0.084 0.916 19 C -0.249 4.249 20 N -0.582 5.582 21 Si 0.794 3.206 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.192 1.192 25 C 0.015 3.985 26 C -0.153 4.153 27 N -0.048 5.048 28 O 0.050 5.950 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.211 0.789 37 H 0.246 0.754 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.016 0.984 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.036 0.964 48 H 0.074 0.926 49 H 0.112 0.888 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.906 -0.269 -20.859 26.852 hybrid contribution 1.222 0.501 0.278 1.349 sum -15.685 0.231 -20.581 25.877 Atomic orbital electron populations 1.21918 0.92075 1.02885 1.03887 1.20092 0.97479 0.96338 0.88971 1.21928 1.01392 0.93757 1.03902 1.25163 0.98674 0.96282 0.87236 1.22678 1.03330 0.99658 0.95872 1.23519 1.03883 0.98772 0.94200 1.17076 0.79518 0.82660 0.82549 1.90761 1.47071 1.43037 1.62328 1.45993 1.51869 1.31384 1.05623 1.21104 0.94166 0.86507 0.93403 0.90904 1.22162 1.00312 0.96804 1.02068 1.21218 0.98196 0.95690 0.94212 1.21998 0.98468 0.97412 0.97981 1.20538 0.94548 0.90395 0.89215 1.44347 1.16764 1.08323 1.64128 1.19533 0.91384 0.95304 1.32848 0.91556 1.25793 1.01652 0.97900 0.99558 1.70187 1.33693 1.04489 1.49798 0.85290 0.80702 0.77723 0.76917 1.21505 1.22073 1.19154 1.21090 0.94732 0.87618 0.95094 1.21959 0.99390 0.97396 0.96539 1.74207 1.10063 1.02798 1.17689 1.84731 1.54072 1.41644 1.14521 0.89064 0.92341 0.92285 0.85508 0.92658 0.88988 0.92370 0.78873 0.75371 0.93049 0.89429 0.91308 0.90573 0.94038 0.92504 0.98356 0.93305 0.94192 0.96414 0.92609 0.88776 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.18 71.98 0.66 -0.30 16 2 C -0.01 -0.08 3.34 -11.54 -0.04 -0.12 16 3 C -0.15 -1.15 9.18 71.98 0.66 -0.49 16 4 C -0.01 -0.17 5.98 25.01 0.15 -0.02 16 5 C -0.19 -3.86 10.91 22.59 0.25 -3.61 16 6 C -0.05 -1.20 7.19 42.96 0.31 -0.89 16 7 C 0.60 17.88 7.81 86.93 0.68 18.56 16 8 O -0.55 -19.25 16.62 -3.70 -0.06 -19.32 16 9 N -0.70 -19.38 4.36 -444.94 -1.94 -21.32 16 10 C 0.15 4.23 2.16 44.99 0.10 4.33 16 11 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 12 C -0.16 -3.56 9.13 71.98 0.66 -2.90 16 13 C -0.07 -2.32 1.79 -10.77 -0.02 -2.34 16 14 C -0.12 -4.64 5.22 30.67 0.16 -4.48 16 15 C 0.18 8.85 5.31 86.36 0.46 9.31 16 16 N -0.61 -31.22 2.99 -699.09 -2.09 -33.31 16 17 C -0.26 -14.62 9.59 84.03 0.81 -13.82 16 18 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 19 C -0.05 -3.08 4.91 84.86 0.42 -2.67 16 20 N -0.94 -56.61 11.19 21.65 0.24 -56.37 16 21 Si 0.97 45.98 29.59 68.60 2.03 48.01 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C 0.14 5.70 6.52 86.36 0.56 6.26 16 26 C -0.11 -3.62 5.04 30.67 0.15 -3.46 16 27 N -0.35 -8.89 11.84 -49.51 -0.59 -9.47 16 28 O 0.13 2.68 11.18 71.91 0.80 3.48 16 29 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.13 0.54 8.12 -2.39 -0.02 0.52 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.19 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.41 10.76 8.14 -92.71 -0.76 10.01 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.76 6.40 -2.38 -0.02 1.75 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.06 2.06 7.40 -2.39 -0.02 2.04 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16 46 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 47 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 2.22 7.93 -2.39 -0.02 2.21 16 49 H 0.09 2.33 6.36 -2.39 -0.02 2.31 16 50 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.16 400.40 4.53 -66.62 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.18 Total: 18.30 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.96 Total: 3.37 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -4.38 Total: -120.47 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.74 Total: -15.83 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.16 4.53 -66.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997249793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.212 kcal (2) G-P(sol) polarization free energy of solvation -71.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds