Wall clock time and date at job start Tue Mar 31 2020 18:47:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52991 * 109.47164 * 2 1
4 4 C 1.50700 * 109.47348 * 120.00277 * 2 1 3
5 5 O 1.33494 * 126.83055 * 300.02491 * 4 2 1
6 6 N 1.20654 * 113.16042 * 180.02562 * 5 4 2
7 7 C 1.30012 * 112.29784 * 359.97438 * 6 5 4
8 8 C 1.37360 * 126.83127 * 119.70878 * 4 2 1
9 9 C 1.47400 * 128.56137 * 359.96005 * 8 4 2
10 10 O 1.21604 * 120.00376 * 0.02562 * 9 8 4
11 11 N 1.34780 * 119.99522 * 179.97438 * 9 8 4
12 12 C 1.46504 * 119.99732 * 179.97438 * 11 9 8
13 13 H 1.09007 * 109.46550 * 35.00498 * 12 11 9
14 14 C 1.52994 * 109.47476 * 275.00595 * 12 11 9
15 15 C 1.53004 * 109.46870 * 155.00282 * 12 11 9
16 16 C 1.53042 * 109.45915 * 300.03090 * 15 12 11
17 17 C 1.53190 * 109.30854 * 178.60384 * 16 15 12
18 18 N 1.46922 * 108.76813 * 54.65358 * 17 16 15
19 19 C 1.36945 * 120.62776 * 126.40597 * 18 17 16
20 20 H 1.07991 * 120.00015 * 331.82628 * 19 18 17
21 21 C 1.38816 * 119.99386 * 151.82966 * 19 18 17
22 22 N 1.31615 * 120.00480 * 343.06264 * 21 19 18
23 23 Si 1.86804 * 119.99709 * 163.06812 * 21 19 18
24 24 H 1.48504 * 109.46823 * 359.97438 * 23 21 19
25 25 H 1.48499 * 109.47310 * 119.99429 * 23 21 19
26 26 H 1.48500 * 109.47164 * 239.99964 * 23 21 19
27 27 C 1.46922 * 118.74256 * 306.38337 * 18 17 16
28 28 C 1.53044 * 109.45614 * 179.97438 * 15 12 11
29 29 H 1.09003 * 109.46883 * 299.99910 * 1 2 3
30 30 H 1.09004 * 109.47296 * 179.97438 * 1 2 3
31 31 H 1.08993 * 109.47343 * 59.99811 * 1 2 3
32 32 H 1.09003 * 109.46883 * 240.00090 * 2 1 3
33 33 H 1.09003 * 109.47147 * 60.00252 * 3 2 1
34 34 H 1.09002 * 109.47577 * 180.02562 * 3 2 1
35 35 H 1.09000 * 109.47506 * 300.00192 * 3 2 1
36 36 H 1.08004 * 127.33132 * 180.02562 * 7 6 5
37 37 H 0.96996 * 120.00561 * 0.02562 * 11 9 8
38 38 H 1.08997 * 109.46994 * 299.99640 * 14 12 11
39 39 H 1.09001 * 109.46976 * 59.99809 * 14 12 11
40 40 H 1.09005 * 109.47167 * 180.02562 * 14 12 11
41 41 H 1.08999 * 109.45700 * 60.00330 * 15 12 11
42 42 H 1.09001 * 109.49361 * 298.56309 * 16 15 12
43 43 H 1.08996 * 109.49786 * 58.66093 * 16 15 12
44 44 H 1.09003 * 109.59881 * 294.86635 * 17 16 15
45 45 H 1.09000 * 109.70063 * 174.50876 * 17 16 15
46 46 H 0.97001 * 119.99995 * 179.97438 * 22 21 19
47 47 H 1.09008 * 109.58393 * 293.82412 * 27 18 17
48 48 H 1.09000 * 109.70991 * 173.46457 * 27 18 17
49 49 H 1.08998 * 109.49705 * 301.33697 * 28 15 12
50 50 H 1.09003 * 109.49554 * 61.43825 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0324 -0.7105 1.2304
5 8 1.7951 -0.3757 2.5007
6 7 2.3208 -1.1181 3.2933
7 6 2.9922 -2.0667 2.7103
8 6 2.8206 -1.8348 1.2679
9 6 3.3625 -2.6150 0.1408
10 8 3.1222 -2.2787 -1.0028
11 7 4.1251 -3.7007 0.3779
12 6 4.6633 -4.4766 -0.7423
13 1 4.9079 -3.8048 -1.5652
14 6 3.6186 -5.4931 -1.2072
15 6 5.9267 -5.2130 -0.2923
16 6 6.9711 -4.1959 0.1733
17 6 8.2213 -4.9383 0.6557
18 7 8.6840 -5.8307 -0.4158
19 6 9.9773 -5.7725 -0.8623
20 1 10.5290 -4.8462 -0.8000
21 6 10.5791 -6.9044 -1.3951
22 7 10.0564 -8.0923 -1.1765
23 14 12.1309 -6.7413 -2.4222
24 1 12.5123 -5.3094 -2.5188
25 1 13.2314 -7.5050 -1.7811
26 1 11.8822 -7.2798 -3.7836
27 6 7.7331 -6.7869 -0.9989
28 6 6.4882 -6.0239 -1.4625
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 -0.8899
32 1 1.8933 -0.5138 -0.8900
33 1 1.6767 1.9562 0.8900
34 1 3.1300 1.4425 -0.0005
35 1 1.6767 1.9563 -0.8899
36 1 3.5526 -2.8590 3.1843
37 1 4.3171 -3.9689 1.2900
38 1 3.3741 -6.1648 -0.3843
39 1 2.7186 -4.9684 -1.5277
40 1 4.0192 -6.0707 -2.0403
41 1 5.6818 -5.8846 0.5306
42 1 7.2348 -3.5397 -0.6562
43 1 6.5621 -3.6028 0.9912
44 1 7.9787 -5.5258 1.5412
45 1 9.0049 -4.2201 0.8971
46 1 10.4768 -8.8832 -1.5491
47 1 7.4507 -7.5251 -0.2482
48 1 8.1922 -7.2890 -1.8505
49 1 5.7354 -6.7320 -1.8088
50 1 6.7565 -5.3502 -2.2763
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000997375606.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:47:05
Heat of formation + Delta-G solvation = 23.500427 kcal
Electronic energy + Delta-G solvation = -29671.062925 eV
Core-core repulsion = 25701.461341 eV
Total energy + Delta-G solvation = -3969.601585 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-45.19240 -39.96069 -38.01500 -36.34067 -35.31571 -34.05893 -32.82411 -31.48877
-30.95830 -29.72661 -29.10376 -27.56514 -25.63552 -25.03793 -23.88275 -22.85768
-22.05319 -21.31953 -20.59507 -20.31371 -19.19692 -17.99176 -17.95398 -16.79744
-16.56880 -16.12104 -15.37058 -15.10292 -14.86459 -14.72231 -14.12438 -14.09811
-13.75352 -13.62944 -13.58222 -13.38134 -13.31639 -12.96271 -12.59544 -12.39755
-12.32244 -12.07855 -11.84862 -11.81219 -11.67144 -11.41813 -11.18228 -11.12641
-11.00078 -10.73600 -10.68416 -10.44948 -10.24431 -10.18510 -10.10959 -9.91076
-9.74892 -9.56508 -9.46840 -9.02612 -8.48079 -6.67450 -5.79907 -3.22167
0.81919 1.52684 2.50008 3.06679 3.09919 3.36319 3.44536 3.46734
3.94106 3.99032 4.27535 4.49076 4.51131 4.66714 4.79030 4.90372
5.01388 5.17567 5.23890 5.24351 5.30659 5.36960 5.41848 5.47641
5.49486 5.50298 5.63805 5.65537 5.69129 5.82639 5.83020 5.89574
5.95408 6.05027 6.14395 6.23789 6.30775 6.41983 6.48179 6.59483
6.69185 6.75008 6.82629 6.97166 7.34038 7.41347 7.64766 7.79350
7.88376 8.07342 8.44617 9.21013 9.84428 10.40966 11.28557
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.021400 B = 0.002355 C = 0.002332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1308.072928 B =11887.929019 C =12004.181283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.029 4.029
3 C -0.148 4.148
4 C 0.057 3.943
5 O 0.093 5.907
6 N -0.355 5.355
7 C 0.023 3.977
8 C -0.262 4.262
9 C 0.598 3.402
10 O -0.536 6.536
11 N -0.709 5.709
12 C 0.146 3.854
13 H 0.088 0.912
14 C -0.163 4.163
15 C -0.084 4.084
16 C -0.126 4.126
17 C 0.146 3.854
18 N -0.592 5.592
19 C -0.251 4.251
20 H 0.065 0.935
21 C 0.001 3.999
22 N -0.903 5.903
23 Si 0.901 3.099
24 H -0.278 1.278
25 H -0.290 1.290
26 H -0.289 1.289
27 C 0.172 3.828
28 C -0.133 4.133
29 H 0.062 0.938
30 H 0.060 0.940
31 H 0.072 0.928
32 H 0.130 0.870
33 H 0.062 0.938
34 H 0.061 0.939
35 H 0.072 0.928
36 H 0.201 0.799
37 H 0.399 0.601
38 H 0.055 0.945
39 H 0.054 0.946
40 H 0.073 0.927
41 H 0.067 0.933
42 H 0.058 0.942
43 H 0.047 0.953
44 H 0.015 0.985
45 H 0.052 0.948
46 H 0.253 0.747
47 H 0.017 0.983
48 H 0.087 0.913
49 H 0.054 0.946
50 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.546 13.129 4.163 23.911
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.048 4.048
3 C -0.206 4.206
4 C -0.007 4.007
5 O 0.033 5.967
6 N -0.060 5.060
7 C -0.160 4.160
8 C -0.270 4.270
9 C 0.385 3.615
10 O -0.415 6.415
11 N -0.358 5.358
12 C 0.042 3.958
13 H 0.107 0.893
14 C -0.221 4.221
15 C -0.103 4.103
16 C -0.165 4.165
17 C 0.019 3.981
18 N -0.315 5.315
19 C -0.380 4.380
20 H 0.083 0.917
21 C -0.197 4.197
22 N -0.548 5.548
23 Si 0.731 3.269
24 H -0.203 1.203
25 H -0.218 1.218
26 H -0.215 1.215
27 C 0.046 3.954
28 C -0.173 4.173
29 H 0.081 0.919
30 H 0.079 0.921
31 H 0.091 0.909
32 H 0.148 0.852
33 H 0.081 0.919
34 H 0.080 0.920
35 H 0.091 0.909
36 H 0.218 0.782
37 H 0.233 0.767
38 H 0.074 0.926
39 H 0.073 0.927
40 H 0.092 0.908
41 H 0.086 0.914
42 H 0.077 0.923
43 H 0.065 0.935
44 H 0.033 0.967
45 H 0.070 0.930
46 H 0.063 0.937
47 H 0.035 0.965
48 H 0.106 0.894
49 H 0.073 0.927
50 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -19.867 13.550 4.560 24.476
hybrid contribution 1.274 -0.715 -0.489 1.541
sum -18.593 12.835 4.070 22.956
Atomic orbital electron populations
1.21867 0.92853 1.02751 1.03007 1.20265 0.96876 0.96505 0.91200
1.21870 1.01848 0.93836 1.02997 1.24921 0.94525 0.93863 0.87414
1.84555 1.55611 1.43905 1.12614 1.73671 1.11675 1.04577 1.16095
1.26407 1.00097 0.99308 0.90207 1.22170 1.09125 1.01373 0.94285
1.16758 0.78190 0.79894 0.86686 1.90748 1.59600 1.69417 1.21737
1.45931 1.51287 1.27870 1.10751 1.21232 0.93206 0.92672 0.88688
0.89344 1.22208 0.98986 0.99020 1.01855 1.21347 0.92535 0.96986
0.99455 1.22045 0.96983 0.97425 1.00070 1.20883 0.93599 0.92859
0.90734 1.44057 1.07879 1.41265 1.38300 1.19225 0.89023 0.94195
1.35586 0.91748 1.25039 0.97976 0.95005 1.01671 1.70035 1.41465
0.96934 1.46350 0.86249 0.82969 0.77568 0.80158 1.20270 1.21751
1.21542 1.20765 0.86607 0.89919 0.98138 1.22270 0.99517 0.98958
0.96558 0.91919 0.92105 0.90922 0.85232 0.91914 0.91983 0.90913
0.78209 0.76680 0.92631 0.92672 0.90811 0.91449 0.92293 0.93472
0.96694 0.92966 0.93711 0.96519 0.89439 0.92742 0.92452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.99 9.18 37.16 0.34 -0.65 16
2 C -0.03 -0.25 3.28 -91.78 -0.30 -0.55 16
3 C -0.15 -1.04 9.17 37.15 0.34 -0.70 16
4 C 0.06 0.59 6.06 -34.63 -0.21 0.38 16
5 O 0.09 0.99 11.06 18.65 0.21 1.19 16
6 N -0.35 -3.96 12.01 31.80 0.38 -3.58 16
7 C 0.02 0.22 11.95 -14.73 -0.18 0.04 16
8 C -0.26 -2.88 6.47 -102.89 -0.67 -3.54 16
9 C 0.60 7.53 7.78 -12.53 -0.10 7.43 16
10 O -0.54 -8.12 14.52 5.27 0.08 -8.04 16
11 N -0.71 -8.08 4.36 -54.88 -0.24 -8.32 16
12 C 0.15 1.91 2.16 -67.93 -0.15 1.76 16
13 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16
14 C -0.16 -1.97 9.13 37.15 0.34 -1.63 16
15 C -0.08 -1.26 1.79 -90.57 -0.16 -1.42 16
16 C -0.13 -2.05 5.22 -26.61 -0.14 -2.19 16
17 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16
18 N -0.59 -14.46 2.99 -172.32 -0.52 -14.97 16
19 C -0.25 -6.81 9.58 -15.05 -0.14 -6.95 16
20 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16
21 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16
22 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16
23 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16
24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16
26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
27 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16
28 C -0.13 -2.36 5.04 -26.61 -0.13 -2.50 16
29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.13 1.33 5.89 -51.93 -0.31 1.03 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
36 H 0.20 1.29 7.88 -52.48 -0.41 0.87 16
37 H 0.40 3.70 7.75 -40.82 -0.32 3.38 16
38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
40 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16
41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
43 H 0.05 0.65 7.41 -51.93 -0.38 0.26 16
44 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
45 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16
46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16
47 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16
48 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16
49 H 0.05 0.86 6.36 -51.93 -0.33 0.53 16
50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
LS Contribution 395.89 15.07 5.97 5.97
Total: -1.00 -31.15 395.89 -8.06 -39.21
By element:
Atomic # 1 Polarization: 9.27 SS G_CDS: -8.25 Total: 1.02 kcal
Atomic # 6 Polarization: -2.45 SS G_CDS: -1.28 Total: -3.73 kcal
Atomic # 7 Polarization: -52.41 SS G_CDS: 0.25 Total: -52.16 kcal
Atomic # 8 Polarization: -7.13 SS G_CDS: 0.28 Total: -6.85 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -31.15 -8.06 -39.21 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997375606.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.715 kcal
(2) G-P(sol) polarization free energy of solvation -31.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.565 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds