Wall clock time and date at job start Tue Mar 31 2020 18:47:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52991 * 109.47164 * 2 1
4 4 C 1.50700 * 109.47348 * 120.00277 * 2 1 3
5 5 O 1.33494 * 126.83055 * 300.02491 * 4 2 1
6 6 N 1.20654 * 113.16042 * 180.02562 * 5 4 2
7 7 C 1.30012 * 112.29784 * 359.97438 * 6 5 4
8 8 C 1.37360 * 126.83127 * 119.70878 * 4 2 1
9 9 C 1.47400 * 128.56137 * 359.96005 * 8 4 2
10 10 O 1.21604 * 120.00376 * 0.02562 * 9 8 4
11 11 N 1.34780 * 119.99522 * 179.97438 * 9 8 4
12 12 C 1.46504 * 119.99732 * 179.97438 * 11 9 8
13 13 H 1.09007 * 109.46550 * 35.00498 * 12 11 9
14 14 C 1.52994 * 109.47476 * 275.00595 * 12 11 9
15 15 C 1.53004 * 109.46870 * 155.00282 * 12 11 9
16 16 C 1.53042 * 109.45915 * 300.03090 * 15 12 11
17 17 C 1.53190 * 109.30854 * 178.60384 * 16 15 12
18 18 N 1.46922 * 108.76813 * 54.65358 * 17 16 15
19 19 C 1.36945 * 120.62776 * 126.40597 * 18 17 16
20 20 H 1.07991 * 120.00015 * 331.82628 * 19 18 17
21 21 C 1.38816 * 119.99386 * 151.82966 * 19 18 17
22 22 N 1.31615 * 120.00480 * 343.06264 * 21 19 18
23 23 Si 1.86804 * 119.99709 * 163.06812 * 21 19 18
24 24 H 1.48504 * 109.46823 * 359.97438 * 23 21 19
25 25 H 1.48499 * 109.47310 * 119.99429 * 23 21 19
26 26 H 1.48500 * 109.47164 * 239.99964 * 23 21 19
27 27 C 1.46922 * 118.74256 * 306.38337 * 18 17 16
28 28 C 1.53044 * 109.45614 * 179.97438 * 15 12 11
29 29 H 1.09003 * 109.46883 * 299.99910 * 1 2 3
30 30 H 1.09004 * 109.47296 * 179.97438 * 1 2 3
31 31 H 1.08993 * 109.47343 * 59.99811 * 1 2 3
32 32 H 1.09003 * 109.46883 * 240.00090 * 2 1 3
33 33 H 1.09003 * 109.47147 * 60.00252 * 3 2 1
34 34 H 1.09002 * 109.47577 * 180.02562 * 3 2 1
35 35 H 1.09000 * 109.47506 * 300.00192 * 3 2 1
36 36 H 1.08004 * 127.33132 * 180.02562 * 7 6 5
37 37 H 0.96996 * 120.00561 * 0.02562 * 11 9 8
38 38 H 1.08997 * 109.46994 * 299.99640 * 14 12 11
39 39 H 1.09001 * 109.46976 * 59.99809 * 14 12 11
40 40 H 1.09005 * 109.47167 * 180.02562 * 14 12 11
41 41 H 1.08999 * 109.45700 * 60.00330 * 15 12 11
42 42 H 1.09001 * 109.49361 * 298.56309 * 16 15 12
43 43 H 1.08996 * 109.49786 * 58.66093 * 16 15 12
44 44 H 1.09003 * 109.59881 * 294.86635 * 17 16 15
45 45 H 1.09000 * 109.70063 * 174.50876 * 17 16 15
46 46 H 0.97001 * 119.99995 * 179.97438 * 22 21 19
47 47 H 1.09008 * 109.58393 * 293.82412 * 27 18 17
48 48 H 1.09000 * 109.70991 * 173.46457 * 27 18 17
49 49 H 1.08998 * 109.49705 * 301.33697 * 28 15 12
50 50 H 1.09003 * 109.49554 * 61.43825 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0324 -0.7105 1.2304
5 8 1.7951 -0.3757 2.5007
6 7 2.3208 -1.1181 3.2933
7 6 2.9922 -2.0667 2.7103
8 6 2.8206 -1.8348 1.2679
9 6 3.3625 -2.6150 0.1408
10 8 3.1222 -2.2787 -1.0028
11 7 4.1251 -3.7007 0.3779
12 6 4.6633 -4.4766 -0.7423
13 1 4.9079 -3.8048 -1.5652
14 6 3.6186 -5.4931 -1.2072
15 6 5.9267 -5.2130 -0.2923
16 6 6.9711 -4.1959 0.1733
17 6 8.2213 -4.9383 0.6557
18 7 8.6840 -5.8307 -0.4158
19 6 9.9773 -5.7725 -0.8623
20 1 10.5290 -4.8462 -0.8000
21 6 10.5791 -6.9044 -1.3951
22 7 10.0564 -8.0923 -1.1765
23 14 12.1309 -6.7413 -2.4222
24 1 12.5123 -5.3094 -2.5188
25 1 13.2314 -7.5050 -1.7811
26 1 11.8822 -7.2798 -3.7836
27 6 7.7331 -6.7869 -0.9989
28 6 6.4882 -6.0239 -1.4625
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 -0.8899
32 1 1.8933 -0.5138 -0.8900
33 1 1.6767 1.9562 0.8900
34 1 3.1300 1.4425 -0.0005
35 1 1.6767 1.9563 -0.8899
36 1 3.5526 -2.8590 3.1843
37 1 4.3171 -3.9689 1.2900
38 1 3.3741 -6.1648 -0.3843
39 1 2.7186 -4.9684 -1.5277
40 1 4.0192 -6.0707 -2.0403
41 1 5.6818 -5.8846 0.5306
42 1 7.2348 -3.5397 -0.6562
43 1 6.5621 -3.6028 0.9912
44 1 7.9787 -5.5258 1.5412
45 1 9.0049 -4.2201 0.8971
46 1 10.4768 -8.8832 -1.5491
47 1 7.4507 -7.5251 -0.2482
48 1 8.1922 -7.2890 -1.8505
49 1 5.7354 -6.7320 -1.8088
50 1 6.7565 -5.3502 -2.2763
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000997375606.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:47:04
Heat of formation + Delta-G solvation = 5.934194 kcal
Electronic energy + Delta-G solvation = -29671.824654 eV
Core-core repulsion = 25701.461341 eV
Total energy + Delta-G solvation = -3970.363314 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-45.97445 -41.01833 -39.40346 -37.15584 -36.59476 -34.94530 -34.36320 -32.86667
-31.87145 -31.38372 -30.44078 -28.09992 -27.17993 -26.16439 -24.77666 -24.14469
-23.62486 -22.34380 -21.60324 -21.35993 -20.65405 -19.02197 -18.74469 -18.53145
-17.41989 -17.18480 -16.79760 -16.17361 -16.00288 -15.71995 -15.58766 -15.30481
-14.89785 -14.85149 -14.73201 -14.58939 -14.30288 -14.17074 -14.00314 -13.52637
-13.38555 -13.08177 -12.93015 -12.88101 -12.71269 -12.62992 -12.41368 -12.39188
-12.25682 -12.13638 -11.99144 -11.83995 -11.78330 -11.49478 -11.45804 -11.26963
-11.07654 -10.97440 -10.56626 -10.53270 -10.05513 -8.65326 -7.86957 -5.31524
-0.00021 0.76039 1.44756 1.47326 1.57179 1.69114 2.13835 2.18572
2.51190 3.22546 3.24748 3.27232 3.49027 3.69557 3.75023 3.87477
3.97243 4.07480 4.07617 4.10978 4.26693 4.43128 4.49007 4.57433
4.59426 4.61463 4.75802 4.75906 4.79152 4.82627 4.89123 4.89623
4.92587 5.01141 5.05736 5.10471 5.14677 5.20201 5.29193 5.29863
5.33828 5.38305 5.46857 5.51546 5.57402 5.67389 5.82272 6.40829
6.48440 7.10471 7.14828 7.16998 7.89416 8.39421 9.18954
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.021400 B = 0.002355 C = 0.002332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1308.072928 B =11887.929019 C =12004.181283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.031 4.031
3 C -0.145 4.145
4 C 0.063 3.937
5 O 0.087 5.913
6 N -0.376 5.376
7 C 0.037 3.963
8 C -0.282 4.282
9 C 0.600 3.400
10 O -0.566 6.566
11 N -0.700 5.700
12 C 0.158 3.842
13 H 0.069 0.931
14 C -0.158 4.158
15 C -0.073 4.073
16 C -0.113 4.113
17 C 0.141 3.859
18 N -0.612 5.612
19 C -0.261 4.261
20 H 0.061 0.939
21 C -0.050 4.050
22 N -0.933 5.933
23 Si 0.962 3.038
24 H -0.269 1.269
25 H -0.292 1.292
26 H -0.290 1.290
27 C 0.177 3.823
28 C -0.121 4.121
29 H 0.070 0.930
30 H 0.052 0.948
31 H 0.088 0.912
32 H 0.112 0.888
33 H 0.070 0.930
34 H 0.049 0.951
35 H 0.088 0.912
36 H 0.232 0.768
37 H 0.412 0.588
38 H 0.069 0.931
39 H 0.051 0.949
40 H 0.073 0.927
41 H 0.080 0.920
42 H 0.043 0.957
43 H 0.080 0.920
44 H 0.019 0.981
45 H 0.046 0.954
46 H 0.250 0.750
47 H 0.000 1.000
48 H 0.050 0.950
49 H 0.077 0.923
50 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.889 14.249 4.895 25.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.050 4.050
3 C -0.202 4.202
4 C -0.002 4.002
5 O 0.031 5.969
6 N -0.083 5.083
7 C -0.146 4.146
8 C -0.289 4.289
9 C 0.388 3.612
10 O -0.447 6.447
11 N -0.350 5.350
12 C 0.054 3.946
13 H 0.087 0.913
14 C -0.216 4.216
15 C -0.092 4.092
16 C -0.152 4.152
17 C 0.016 3.984
18 N -0.336 5.336
19 C -0.391 4.391
20 H 0.079 0.921
21 C -0.245 4.245
22 N -0.579 5.579
23 Si 0.791 3.209
24 H -0.194 1.194
25 H -0.219 1.219
26 H -0.216 1.216
27 C 0.051 3.949
28 C -0.160 4.160
29 H 0.089 0.911
30 H 0.071 0.929
31 H 0.107 0.893
32 H 0.130 0.870
33 H 0.089 0.911
34 H 0.069 0.931
35 H 0.107 0.893
36 H 0.248 0.752
37 H 0.249 0.751
38 H 0.088 0.912
39 H 0.070 0.930
40 H 0.092 0.908
41 H 0.099 0.901
42 H 0.062 0.938
43 H 0.098 0.902
44 H 0.037 0.963
45 H 0.065 0.935
46 H 0.059 0.941
47 H 0.018 0.982
48 H 0.068 0.932
49 H 0.095 0.905
50 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -21.232 14.702 5.320 26.367
hybrid contribution 1.688 -1.039 -0.677 2.094
sum -19.544 13.663 4.643 24.294
Atomic orbital electron populations
1.21860 0.91366 1.02636 1.04220 1.20320 0.98072 0.96930 0.89699
1.21868 1.01095 0.93035 1.04238 1.25289 0.93595 0.93539 0.87760
1.84550 1.55803 1.44020 1.12572 1.73666 1.12721 1.05369 1.16574
1.26882 0.99106 0.99211 0.89426 1.22086 1.10295 1.01976 0.94541
1.16897 0.77850 0.79840 0.86623 1.90742 1.60704 1.70194 1.23040
1.45756 1.50841 1.27409 1.11003 1.20906 0.92637 0.92458 0.88581
0.91262 1.22158 0.98305 0.98779 1.02348 1.21199 0.92845 0.96621
0.98547 1.21890 0.95538 0.97232 1.00557 1.21050 0.95144 0.92327
0.89908 1.44338 1.07464 1.42018 1.39764 1.19504 0.90273 0.94016
1.35305 0.92080 1.25740 1.00975 0.94786 1.03041 1.70171 1.42870
0.97379 1.47505 0.85285 0.79581 0.77705 0.78353 1.19380 1.21878
1.21629 1.20592 0.88107 0.90009 0.96184 1.22062 0.97730 0.99014
0.97224 0.91120 0.92873 0.89313 0.87037 0.91084 0.93133 0.89290
0.75164 0.75092 0.91213 0.93014 0.90836 0.90143 0.93800 0.90153
0.96259 0.93492 0.94128 0.98184 0.93155 0.90461 0.93587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.71 9.18 71.98 0.66 -1.05 16
2 C -0.03 -0.49 3.28 -11.54 -0.04 -0.53 16
3 C -0.15 -1.84 9.17 71.98 0.66 -1.18 16
4 C 0.06 1.21 6.06 25.48 0.15 1.36 16
5 O 0.09 1.72 11.06 76.98 0.85 2.58 16
6 N -0.38 -7.67 12.01 -54.21 -0.65 -8.32 16
7 C 0.04 0.61 11.95 87.29 1.04 1.66 16
8 C -0.28 -5.69 6.47 -18.75 -0.12 -5.81 16
9 C 0.60 14.11 7.78 86.66 0.67 14.79 16
10 O -0.57 -16.70 14.52 -4.04 -0.06 -16.76 16
11 N -0.70 -14.16 4.36 -445.81 -1.94 -16.10 16
12 C 0.16 3.83 2.16 44.99 0.10 3.92 16
13 H 0.07 2.01 7.58 -2.38 -0.02 1.99 16
14 C -0.16 -3.45 9.13 71.98 0.66 -2.79 16
15 C -0.07 -2.04 1.79 -10.76 -0.02 -2.06 16
16 C -0.11 -3.46 5.22 30.67 0.16 -3.30 16
17 C 0.14 5.57 6.52 86.36 0.56 6.13 16
18 N -0.61 -30.15 2.99 -699.09 -2.09 -32.25 16
19 C -0.26 -14.35 9.58 84.03 0.81 -13.54 16
20 H 0.06 3.33 7.88 -2.92 -0.02 3.30 16
21 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16
22 N -0.93 -54.83 11.19 21.65 0.24 -54.59 16
23 Si 0.96 45.01 29.59 68.60 2.03 47.04 16
24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16
27 C 0.18 8.21 5.30 86.36 0.46 8.67 16
28 C -0.12 -4.19 5.04 30.67 0.15 -4.03 16
29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16
32 H 0.11 2.26 5.89 -2.39 -0.01 2.24 16
33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
36 H 0.23 2.10 7.88 -2.91 -0.02 2.08 16
37 H 0.41 6.15 7.75 -92.71 -0.72 5.43 16
38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
40 H 0.07 1.61 6.40 -2.38 -0.02 1.60 16
41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
43 H 0.08 1.94 7.41 -2.39 -0.02 1.93 16
44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
45 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16
46 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16
47 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16
48 H 0.05 2.70 6.07 -2.39 -0.01 2.69 16
49 H 0.08 2.32 6.36 -2.39 -0.02 2.30 16
50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
Total: -1.00 -68.80 395.89 4.92 -63.87
By element:
Atomic # 1 Polarization: 14.46 SS G_CDS: 0.22 Total: 14.68 kcal
Atomic # 6 Polarization: -6.47 SS G_CDS: 6.33 Total: -0.15 kcal
Atomic # 7 Polarization: -106.82 SS G_CDS: -4.44 Total: -111.26 kcal
Atomic # 8 Polarization: -14.98 SS G_CDS: 0.79 Total: -14.19 kcal
Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal
Total: -68.80 4.92 -63.87 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997375606.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.808 kcal
(2) G-P(sol) polarization free energy of solvation -68.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.934 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds