Wall clock time and date at job start Tue Mar 31 2020 18:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47004 * 2 1 4 4 C 1.50701 * 109.47324 * 120.00038 * 2 1 3 5 5 O 1.34255 * 126.52534 * 299.97557 * 4 2 1 6 6 C 1.34047 * 108.22618 * 180.02562 * 5 4 2 7 7 N 1.29928 * 109.24345 * 0.24339 * 6 5 4 8 8 C 1.36070 * 108.47877 * 359.61438 * 7 6 5 9 9 C 1.47419 * 126.44942 * 180.15232 * 8 7 6 10 10 O 1.21614 * 119.99738 * 180.27202 * 9 8 7 11 11 N 1.34777 * 120.00136 * 0.26923 * 9 8 7 12 12 C 1.46496 * 120.00176 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47113 * 34.99755 * 12 11 9 14 14 C 1.53009 * 109.47262 * 275.00322 * 12 11 9 15 15 C 1.53003 * 109.47368 * 155.00226 * 12 11 9 16 16 C 1.53040 * 109.45848 * 300.06986 * 15 12 11 17 17 C 1.53188 * 109.31364 * 178.61562 * 16 15 12 18 18 N 1.46921 * 108.77604 * 54.63216 * 17 16 15 19 19 C 1.36942 * 120.62922 * 126.41842 * 18 17 16 20 20 H 1.08001 * 119.99401 * 207.66217 * 19 18 17 21 21 C 1.38806 * 119.99988 * 27.65928 * 19 18 17 22 22 N 1.31622 * 120.00201 * 17.37253 * 21 19 18 23 23 Si 1.86798 * 119.99906 * 197.36548 * 21 19 18 24 24 H 1.48509 * 109.46972 * 60.00546 * 23 21 19 25 25 H 1.48502 * 109.47146 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47563 * 300.00708 * 23 21 19 27 27 C 1.46924 * 118.74146 * 306.39074 * 18 17 16 28 28 C 1.53033 * 109.46013 * 179.97438 * 15 12 11 29 29 H 1.08999 * 109.47370 * 299.99342 * 1 2 3 30 30 H 1.08998 * 109.46997 * 60.00092 * 1 2 3 31 31 H 1.09005 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47370 * 240.00658 * 2 1 3 33 33 H 1.09008 * 109.47104 * 60.00025 * 3 2 1 34 34 H 1.08999 * 109.47184 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47348 * 300.00276 * 3 2 1 36 36 H 1.08004 * 125.37577 * 179.97438 * 6 5 4 37 37 H 0.96999 * 119.99724 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.47025 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46593 * 299.99751 * 14 12 11 40 40 H 1.08998 * 109.46953 * 59.99609 * 14 12 11 41 41 H 1.09002 * 109.45804 * 60.02479 * 15 12 11 42 42 H 1.09004 * 109.49492 * 298.56764 * 16 15 12 43 43 H 1.09004 * 109.49858 * 58.65637 * 16 15 12 44 44 H 1.09001 * 109.58617 * 294.84658 * 17 16 15 45 45 H 1.09000 * 109.58862 * 174.42637 * 17 16 15 46 46 H 0.96993 * 119.99962 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.58930 * 293.82521 * 27 18 17 48 48 H 1.09001 * 109.58974 * 173.39182 * 27 18 17 49 49 H 1.08994 * 109.50289 * 301.33368 * 28 15 12 50 50 H 1.09000 * 109.49889 * 61.43394 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.7906 -0.3676 2.5058 6 6 2.4135 -1.2479 3.3019 7 7 3.0372 -2.1211 2.5693 8 6 2.8181 -1.8212 1.2603 9 6 3.3384 -2.5576 0.0940 10 8 3.0716 -2.1812 -1.0312 11 7 4.1097 -3.6480 0.2748 12 6 4.6263 -4.3801 -0.8842 13 1 4.8507 -3.6778 -1.6870 14 6 3.5753 -5.3836 -1.3634 15 6 5.9016 -5.1271 -0.4885 16 6 6.9520 -4.1233 -0.0077 17 6 8.2149 -4.8774 0.4201 18 7 8.6579 -5.7277 -0.6932 19 6 9.9412 -5.6475 -1.1645 20 1 10.1549 -5.8958 -2.1936 21 6 10.9671 -5.2471 -0.3196 22 7 10.7937 -5.2737 0.9849 23 14 12.5940 -4.6707 -1.0339 24 1 12.3622 -3.4883 -1.9021 25 1 13.5163 -4.3016 0.0699 26 1 13.1971 -5.7641 -1.8375 27 6 7.6982 -6.6660 -1.2908 28 6 6.4406 -5.8923 -1.6993 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.4027 -1.2311 4.3817 37 1 4.3221 -3.9483 1.1723 38 1 3.9599 -5.9286 -2.2255 39 1 3.3509 -6.0858 -0.5606 40 1 2.6668 -4.8514 -1.6453 41 1 5.6768 -5.8296 0.3140 42 1 7.1956 -3.4356 -0.8175 43 1 6.5582 -3.5627 0.8402 44 1 7.9935 -5.4982 1.2883 45 1 8.9999 -4.1635 0.6696 46 1 11.5108 -4.9943 1.5752 47 1 7.4345 -7.4326 -0.5622 48 1 8.1422 -7.1322 -2.1704 49 1 5.6831 -6.5905 -2.0551 50 1 6.6890 -5.1883 -2.4935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997387313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:12 Heat of formation + Delta-G solvation = -13.201679 kcal Electronic energy + Delta-G solvation = -29785.688475 eV Core-core repulsion = 25814.495368 eV Total energy + Delta-G solvation = -3971.193107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.68315 -39.79990 -37.92219 -36.05382 -35.22833 -34.97067 -32.83369 -31.05082 -30.18417 -29.84404 -28.72347 -27.52583 -25.49183 -24.61126 -23.62904 -22.81182 -21.93413 -21.07546 -20.48405 -20.29512 -19.17362 -18.13462 -17.00694 -16.74809 -16.39998 -16.02884 -15.35934 -15.06208 -14.87705 -14.68991 -14.16424 -13.90346 -13.85255 -13.50387 -13.47051 -13.32340 -13.29121 -12.90103 -12.56271 -12.35472 -12.20572 -12.03861 -11.67331 -11.62282 -11.57370 -11.43941 -11.37310 -11.17129 -10.93662 -10.91622 -10.64842 -10.40277 -10.21620 -10.12631 -9.98721 -9.84149 -9.47517 -9.42622 -9.20523 -8.86330 -8.42262 -6.62668 -5.74914 -3.16546 0.91206 1.87057 2.31706 3.15237 3.26522 3.40865 3.46438 3.48162 3.83829 4.22858 4.51791 4.53363 4.72696 4.75903 4.94463 5.01520 5.23813 5.25849 5.26759 5.37451 5.42343 5.43191 5.44865 5.54135 5.54618 5.66776 5.70394 5.76869 5.85184 5.86361 5.86842 5.97870 6.05280 6.13414 6.16770 6.31912 6.37391 6.50974 6.62824 6.67635 6.74364 6.82978 6.89127 7.03276 7.19401 7.42783 7.62392 7.70483 7.83051 8.19803 8.49426 9.25726 9.89715 10.46369 11.33486 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.002643 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.181268 B =10592.637112 C =11180.081627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C -0.147 4.147 4 C 0.051 3.949 5 O -0.198 6.198 6 C 0.172 3.828 7 N -0.460 5.460 8 C -0.074 4.074 9 C 0.603 3.397 10 O -0.540 6.540 11 N -0.698 5.698 12 C 0.144 3.856 13 H 0.087 0.913 14 C -0.162 4.162 15 C -0.084 4.084 16 C -0.134 4.134 17 C 0.172 3.828 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.146 3.854 28 C -0.125 4.125 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.255 0.745 37 H 0.408 0.592 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.016 0.984 45 H 0.086 0.914 46 H 0.253 0.747 47 H 0.016 0.984 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.179 9.244 2.279 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.049 4.049 3 C -0.204 4.204 4 C -0.006 4.006 5 O -0.084 6.084 6 C -0.057 4.057 7 N -0.189 5.189 8 C -0.194 4.194 9 C 0.388 3.612 10 O -0.419 6.419 11 N -0.348 5.348 12 C 0.040 3.960 13 H 0.106 0.894 14 C -0.220 4.220 15 C -0.103 4.103 16 C -0.173 4.173 17 C 0.046 3.954 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.019 3.981 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.270 0.730 37 H 0.244 0.756 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.849 9.027 1.839 23.712 hybrid contribution 0.655 0.640 0.380 0.991 sum -21.194 9.667 2.219 23.400 Atomic orbital electron populations 1.21850 0.93212 1.02555 1.02664 1.20342 0.96665 0.96473 0.91374 1.21858 1.01827 0.94061 1.02647 1.23795 0.97314 0.95392 0.84102 1.84349 1.59107 1.48760 1.16210 1.28019 0.93193 0.85608 0.98866 1.70761 1.20776 1.26023 1.01346 1.21558 1.06222 0.99484 0.92136 1.16690 0.78374 0.80033 0.86096 1.90716 1.59726 1.68088 1.23333 1.45912 1.50062 1.27639 1.11155 1.21228 0.93390 0.93517 0.87875 0.89448 1.22212 0.99003 0.99121 1.01665 1.21329 0.92754 0.97373 0.98864 1.22222 0.97555 0.97662 0.99870 1.20754 0.92680 0.93260 0.88671 1.44053 1.08079 1.40670 1.38714 1.19149 0.83438 1.41902 0.93598 0.91788 1.25021 0.97546 1.02079 0.95080 1.70026 1.32822 1.50537 1.01415 0.86386 0.83527 0.79014 0.77953 1.21066 1.21677 1.20915 1.20888 0.89405 0.91384 0.96375 1.22080 0.98531 0.99152 0.96727 0.92294 0.91093 0.92202 0.84664 0.92296 0.92026 0.91068 0.72981 0.75588 0.90997 0.92625 0.92688 0.91433 0.92755 0.93440 0.96583 0.89586 0.93655 0.96577 0.92816 0.92648 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.18 37.16 0.34 -0.78 16 2 C -0.03 -0.30 3.24 -91.77 -0.30 -0.59 16 3 C -0.15 -1.21 9.18 37.16 0.34 -0.87 16 4 C 0.05 0.58 5.95 -35.08 -0.21 0.37 16 5 O -0.20 -1.94 10.73 6.52 0.07 -1.87 16 6 C 0.17 1.49 13.19 51.96 0.69 2.17 16 7 N -0.46 -5.60 11.06 -11.49 -0.13 -5.73 16 8 C -0.07 -0.99 6.99 -83.02 -0.58 -1.57 16 9 C 0.60 8.97 7.78 -12.52 -0.10 8.87 16 10 O -0.54 -8.85 14.13 5.26 0.07 -8.78 16 11 N -0.70 -9.93 4.36 -54.88 -0.24 -10.17 16 12 C 0.14 2.09 2.16 -67.93 -0.15 1.95 16 13 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 14 C -0.16 -2.06 9.13 37.16 0.34 -1.72 16 15 C -0.08 -1.37 1.79 -90.58 -0.16 -1.54 16 16 C -0.13 -2.58 5.22 -26.61 -0.14 -2.72 16 17 C 0.17 4.13 5.31 -3.72 -0.02 4.11 16 18 N -0.59 -14.92 3.00 -172.32 -0.52 -15.44 16 19 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 20 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 22 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 23 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 28 C -0.13 -2.12 5.05 -26.61 -0.13 -2.26 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.58 5.52 -51.93 -0.29 1.29 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.25 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.41 5.60 8.12 -40.82 -0.33 5.27 16 38 H 0.07 0.85 6.40 -51.93 -0.33 0.52 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.86 7.40 -51.93 -0.38 0.47 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 49 H 0.05 0.79 6.36 -51.93 -0.33 0.46 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -32.37 395.96 -7.76 -40.13 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.25 Total: 3.54 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.33 Total: 1.28 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.26 Total: -57.21 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.14 Total: -10.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.37 -7.76 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997387313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.928 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds