Wall clock time and date at job start Tue Mar 31 2020 18:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47010 * 2 1 4 4 C 1.50697 * 109.47288 * 120.00563 * 2 1 3 5 5 N 1.30019 * 127.33123 * 300.02018 * 4 2 1 6 6 O 1.20658 * 112.29953 * 179.97438 * 5 4 2 7 7 C 1.33494 * 113.15949 * 0.02562 * 6 5 4 8 8 C 1.37359 * 106.34084 * 359.74013 * 7 6 5 9 9 C 1.47401 * 128.56910 * 180.26026 * 8 7 6 10 10 O 1.21601 * 120.00018 * 180.13233 * 9 8 7 11 11 N 1.34775 * 119.99788 * 0.13213 * 9 8 7 12 12 C 1.46491 * 120.00041 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47545 * 324.99653 * 12 11 9 14 14 C 1.52997 * 109.47437 * 84.99752 * 12 11 9 15 15 C 1.53004 * 109.47360 * 204.99852 * 12 11 9 16 16 C 1.53042 * 109.45897 * 300.06958 * 15 12 11 17 17 C 1.53192 * 109.31286 * 178.61230 * 16 15 12 18 18 N 1.46924 * 108.77606 * 54.63170 * 17 16 15 19 19 C 1.36937 * 120.62993 * 126.41571 * 18 17 16 20 20 H 1.07998 * 119.99877 * 207.66796 * 19 18 17 21 21 C 1.38810 * 119.99841 * 27.66298 * 19 18 17 22 22 N 1.31614 * 120.00329 * 17.36781 * 21 19 18 23 23 Si 1.86799 * 119.99697 * 197.36810 * 21 19 18 24 24 H 1.48502 * 109.47525 * 60.00247 * 23 21 19 25 25 H 1.48500 * 109.47101 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47222 * 300.00157 * 23 21 19 27 27 C 1.46922 * 118.73958 * 306.39483 * 18 17 16 28 28 C 1.53030 * 109.46291 * 179.97438 * 15 12 11 29 29 H 1.09001 * 109.46880 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47373 * 60.00126 * 1 2 3 31 31 H 1.08997 * 109.47121 * 299.99427 * 1 2 3 32 32 H 1.09002 * 109.46951 * 240.00133 * 2 1 3 33 33 H 1.09002 * 109.47155 * 60.00258 * 3 2 1 34 34 H 1.09007 * 109.47259 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47597 * 300.00298 * 3 2 1 36 36 H 1.07991 * 126.83093 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99595 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47472 * 300.00386 * 14 12 11 39 39 H 1.09001 * 109.47043 * 60.00221 * 14 12 11 40 40 H 1.09004 * 109.47604 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.45798 * 60.02451 * 15 12 11 42 42 H 1.09002 * 109.49562 * 298.56341 * 16 15 12 43 43 H 1.09004 * 109.49638 * 58.65963 * 16 15 12 44 44 H 1.09002 * 109.58561 * 294.84652 * 17 16 15 45 45 H 1.08997 * 109.59046 * 174.42341 * 17 16 15 46 46 H 0.97001 * 120.00433 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.58530 * 293.81618 * 27 18 17 48 48 H 1.09005 * 109.59123 * 173.39607 * 27 18 17 49 49 H 1.08997 * 109.50205 * 301.34109 * 28 15 12 50 50 H 1.09005 * 109.49948 * 61.43778 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.8076 -0.3933 2.4711 6 8 2.3432 -1.1515 3.2418 7 6 3.0296 -2.1211 2.6328 8 6 2.8769 -1.9139 1.2835 9 6 3.4255 -2.7015 0.1649 10 8 3.1914 -2.3730 -0.9823 11 7 4.1865 -3.7857 0.4135 12 6 4.7322 -4.5682 -0.6982 13 1 4.0171 -4.5784 -1.5208 14 6 6.0437 -3.9375 -1.1704 15 6 4.9943 -6.0019 -0.2325 16 6 5.9970 -5.9871 0.9236 17 6 6.2306 -7.4209 1.4099 18 7 6.6402 -8.2474 0.2663 19 6 7.7895 -8.9900 0.3183 20 1 8.3233 -9.2233 -0.5911 21 6 8.2685 -9.4429 1.5400 22 7 7.4755 -9.4663 2.5901 23 14 10.0388 -10.0191 1.6934 24 1 10.9545 -8.9048 1.3399 25 1 10.2996 -10.4504 3.0903 26 1 10.2695 -11.1607 0.7721 27 6 5.7930 -8.2623 -0.9340 28 6 5.5637 -6.8192 -1.3942 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 3.5900 -2.9133 3.1066 37 1 4.3734 -4.0474 1.3287 38 1 5.8571 -2.9162 -1.5021 39 1 6.7588 -3.9274 -0.3478 40 1 6.4500 -4.5200 -1.9973 41 1 4.0597 -6.4511 0.1034 42 1 6.9401 -5.5607 0.5817 43 1 5.6004 -5.3856 1.7415 44 1 5.3086 -7.8172 1.8355 45 1 7.0163 -7.4271 2.1653 46 1 7.8100 -9.7831 3.4436 47 1 4.8354 -8.7272 -0.6995 48 1 6.2900 -8.8236 -1.7252 49 1 4.8590 -6.8098 -2.2256 50 1 6.5109 -6.3852 -1.7146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997614916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:22 Heat of formation + Delta-G solvation = 25.264148 kcal Electronic energy + Delta-G solvation = -29656.447117 eV Core-core repulsion = 25686.922013 eV Total energy + Delta-G solvation = -3969.525104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.15572 -40.00187 -38.12036 -36.52672 -35.33050 -33.44601 -32.55915 -31.88930 -30.86008 -30.06277 -28.82431 -27.44054 -25.71585 -25.02340 -23.87887 -23.21301 -22.41132 -20.98541 -20.60219 -20.00065 -18.83439 -18.31967 -17.91031 -16.82964 -16.68317 -16.02617 -15.14605 -15.08368 -14.86454 -14.85149 -14.28879 -14.21092 -13.89755 -13.67913 -13.56783 -13.43903 -13.08096 -12.79612 -12.53873 -12.50138 -12.29841 -12.00440 -11.69899 -11.60714 -11.59655 -11.55659 -11.24799 -11.08190 -10.89590 -10.74269 -10.55631 -10.25565 -10.23207 -10.18264 -10.09488 -10.00764 -9.89362 -9.63556 -9.42509 -9.09639 -8.50120 -6.71281 -5.83053 -3.24604 0.81732 1.56622 2.66101 3.06750 3.09569 3.35388 3.41376 3.42628 3.75305 3.97647 4.46401 4.56946 4.68439 4.83648 4.84601 4.90496 5.00850 5.10285 5.18874 5.27560 5.35123 5.35621 5.47365 5.47902 5.53771 5.59132 5.64510 5.67724 5.77117 5.79639 5.93247 5.95463 6.06635 6.08968 6.11252 6.21582 6.28853 6.38992 6.47890 6.54591 6.66956 6.70482 6.77498 6.95849 7.30289 7.38572 7.59063 7.75725 7.94872 8.06161 8.41167 9.17793 9.81364 10.37805 11.25501 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.002422 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.722552 B =11557.843128 C =12246.171919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 C -0.142 4.142 4 C 0.078 3.922 5 N -0.356 5.356 6 O 0.097 5.903 7 C -0.006 4.006 8 C -0.252 4.252 9 C 0.594 3.406 10 O -0.532 6.532 11 N -0.713 5.713 12 C 0.147 3.853 13 H 0.085 0.915 14 C -0.163 4.163 15 C -0.086 4.086 16 C -0.137 4.137 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.145 3.855 28 C -0.126 4.126 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.227 0.773 37 H 0.399 0.601 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.016 0.984 45 H 0.087 0.913 46 H 0.254 0.746 47 H 0.016 0.984 48 H 0.054 0.946 49 H 0.052 0.948 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 17.299 -2.341 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 C -0.200 4.200 4 C -0.085 4.085 5 N -0.062 5.062 6 O 0.038 5.962 7 C -0.088 4.088 8 C -0.259 4.259 9 C 0.380 3.620 10 O -0.410 6.410 11 N -0.364 5.364 12 C 0.044 3.956 13 H 0.103 0.897 14 C -0.221 4.221 15 C -0.105 4.105 16 C -0.176 4.176 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.019 3.981 28 C -0.165 4.165 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.235 0.765 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.182 18.396 -2.367 21.657 hybrid contribution 1.442 -1.127 0.273 1.851 sum -9.740 17.269 -2.094 19.936 Atomic orbital electron populations 1.21812 0.93449 1.02309 1.02413 1.19818 0.96216 0.95716 0.92782 1.21810 1.01347 0.94400 1.02417 1.24829 0.96388 0.93532 0.93787 1.73626 1.16861 1.13842 1.01889 1.84591 1.48203 1.29553 1.33884 1.26482 0.96024 0.94201 0.92111 1.22433 1.08156 1.01196 0.94160 1.16838 0.78073 0.80059 0.87009 1.90754 1.59765 1.69077 1.21441 1.46074 1.51414 1.27917 1.10991 1.21158 0.95308 0.90654 0.88492 0.89703 1.22235 0.97195 1.00641 1.02055 1.21332 0.99502 0.92159 0.97529 1.22308 0.98177 1.01272 0.95829 1.20760 0.99130 0.85126 0.90469 1.44029 1.24281 1.50568 1.12534 1.19147 0.98836 1.26925 0.93223 0.91745 1.25018 0.98411 0.99112 0.97122 1.70016 1.33764 1.50092 1.00963 0.86386 0.85119 0.78621 0.76751 1.21055 1.21654 1.20889 1.20896 0.94055 0.92622 0.90553 1.22070 1.00144 0.98425 0.95906 0.92438 0.91501 0.92282 0.86880 0.92276 0.92466 0.91509 0.75706 0.76516 0.92905 0.91892 0.91040 0.91345 0.91924 0.94077 0.96595 0.89454 0.93606 0.96578 0.92744 0.92974 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 2 C -0.03 -0.27 3.33 -91.78 -0.31 -0.58 16 3 C -0.14 -1.27 9.17 37.15 0.34 -0.93 16 4 C 0.08 0.90 6.09 -79.76 -0.49 0.41 16 5 N -0.36 -4.14 12.01 34.78 0.42 -3.72 16 6 O 0.10 0.97 11.06 18.65 0.21 1.18 16 7 C -0.01 -0.05 11.85 30.41 0.36 0.31 16 8 C -0.25 -2.80 6.47 -102.89 -0.67 -3.46 16 9 C 0.59 7.58 7.78 -12.53 -0.10 7.49 16 10 O -0.53 -8.30 14.92 5.28 0.08 -8.22 16 11 N -0.71 -8.18 4.99 -54.90 -0.27 -8.46 16 12 C 0.15 1.91 2.40 -67.93 -0.16 1.74 16 13 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 14 C -0.16 -2.09 8.78 37.16 0.33 -1.76 16 15 C -0.09 -1.26 2.14 -90.58 -0.19 -1.45 16 16 C -0.14 -2.22 4.82 -26.61 -0.13 -2.35 16 17 C 0.17 3.74 5.31 -3.71 -0.02 3.73 16 18 N -0.59 -14.01 3.00 -172.32 -0.52 -14.52 16 19 C -0.25 -6.66 9.59 -15.06 -0.14 -6.80 16 20 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 23 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.15 2.87 6.51 -3.71 -0.02 2.85 16 28 C -0.13 -1.98 4.97 -26.62 -0.13 -2.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 1.34 6.29 -51.93 -0.33 1.01 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.23 0.91 7.68 -52.49 -0.40 0.51 16 37 H 0.40 3.79 6.03 -40.82 -0.25 3.55 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.82 6.46 -51.93 -0.34 0.48 16 40 H 0.07 0.90 6.46 -51.93 -0.34 0.57 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.07 6.51 -51.93 -0.34 0.73 16 43 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 2.18 6.04 -51.93 -0.31 1.86 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -31.01 391.07 -7.66 -38.67 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.98 Total: 1.70 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.08 Total: -3.89 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.25 Total: -51.42 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.28 Total: -7.04 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.01 -7.66 -38.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997614916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.932 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds