Wall clock time and date at job start Tue Mar 31 2020 18:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47010 * 2 1 4 4 C 1.50697 * 109.47288 * 120.00563 * 2 1 3 5 5 N 1.30019 * 127.33123 * 300.02018 * 4 2 1 6 6 O 1.20658 * 112.29953 * 179.97438 * 5 4 2 7 7 C 1.33494 * 113.15949 * 0.02562 * 6 5 4 8 8 C 1.37359 * 106.34084 * 359.74013 * 7 6 5 9 9 C 1.47401 * 128.56910 * 180.26026 * 8 7 6 10 10 O 1.21601 * 120.00018 * 180.13233 * 9 8 7 11 11 N 1.34775 * 119.99788 * 0.13213 * 9 8 7 12 12 C 1.46491 * 120.00041 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47545 * 324.99653 * 12 11 9 14 14 C 1.52997 * 109.47437 * 84.99752 * 12 11 9 15 15 C 1.53004 * 109.47360 * 204.99852 * 12 11 9 16 16 C 1.53042 * 109.45897 * 300.06958 * 15 12 11 17 17 C 1.53192 * 109.31286 * 178.61230 * 16 15 12 18 18 N 1.46924 * 108.77606 * 54.63170 * 17 16 15 19 19 C 1.36937 * 120.62993 * 126.41571 * 18 17 16 20 20 H 1.07998 * 119.99877 * 207.66796 * 19 18 17 21 21 C 1.38810 * 119.99841 * 27.66298 * 19 18 17 22 22 N 1.31614 * 120.00329 * 17.36781 * 21 19 18 23 23 Si 1.86799 * 119.99697 * 197.36810 * 21 19 18 24 24 H 1.48502 * 109.47525 * 60.00247 * 23 21 19 25 25 H 1.48500 * 109.47101 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47222 * 300.00157 * 23 21 19 27 27 C 1.46922 * 118.73958 * 306.39483 * 18 17 16 28 28 C 1.53030 * 109.46291 * 179.97438 * 15 12 11 29 29 H 1.09001 * 109.46880 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47373 * 60.00126 * 1 2 3 31 31 H 1.08997 * 109.47121 * 299.99427 * 1 2 3 32 32 H 1.09002 * 109.46951 * 240.00133 * 2 1 3 33 33 H 1.09002 * 109.47155 * 60.00258 * 3 2 1 34 34 H 1.09007 * 109.47259 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47597 * 300.00298 * 3 2 1 36 36 H 1.07991 * 126.83093 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99595 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47472 * 300.00386 * 14 12 11 39 39 H 1.09001 * 109.47043 * 60.00221 * 14 12 11 40 40 H 1.09004 * 109.47604 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.45798 * 60.02451 * 15 12 11 42 42 H 1.09002 * 109.49562 * 298.56341 * 16 15 12 43 43 H 1.09004 * 109.49638 * 58.65963 * 16 15 12 44 44 H 1.09002 * 109.58561 * 294.84652 * 17 16 15 45 45 H 1.08997 * 109.59046 * 174.42341 * 17 16 15 46 46 H 0.97001 * 120.00433 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.58530 * 293.81618 * 27 18 17 48 48 H 1.09005 * 109.59123 * 173.39607 * 27 18 17 49 49 H 1.08997 * 109.50205 * 301.34109 * 28 15 12 50 50 H 1.09005 * 109.49948 * 61.43778 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.8076 -0.3933 2.4711 6 8 2.3432 -1.1515 3.2418 7 6 3.0296 -2.1211 2.6328 8 6 2.8769 -1.9139 1.2835 9 6 3.4255 -2.7015 0.1649 10 8 3.1914 -2.3730 -0.9823 11 7 4.1865 -3.7857 0.4135 12 6 4.7322 -4.5682 -0.6982 13 1 4.0171 -4.5784 -1.5208 14 6 6.0437 -3.9375 -1.1704 15 6 4.9943 -6.0019 -0.2325 16 6 5.9970 -5.9871 0.9236 17 6 6.2306 -7.4209 1.4099 18 7 6.6402 -8.2474 0.2663 19 6 7.7895 -8.9900 0.3183 20 1 8.3233 -9.2233 -0.5911 21 6 8.2685 -9.4429 1.5400 22 7 7.4755 -9.4663 2.5901 23 14 10.0388 -10.0191 1.6934 24 1 10.9545 -8.9048 1.3399 25 1 10.2996 -10.4504 3.0903 26 1 10.2695 -11.1607 0.7721 27 6 5.7930 -8.2623 -0.9340 28 6 5.5637 -6.8192 -1.3942 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 3.5900 -2.9133 3.1066 37 1 4.3734 -4.0474 1.3287 38 1 5.8571 -2.9162 -1.5021 39 1 6.7588 -3.9274 -0.3478 40 1 6.4500 -4.5200 -1.9973 41 1 4.0597 -6.4511 0.1034 42 1 6.9401 -5.5607 0.5817 43 1 5.6004 -5.3856 1.7415 44 1 5.3086 -7.8172 1.8355 45 1 7.0163 -7.4271 2.1653 46 1 7.8100 -9.7831 3.4436 47 1 4.8354 -8.7272 -0.6995 48 1 6.2900 -8.8236 -1.7252 49 1 4.8590 -6.8098 -2.2256 50 1 6.5109 -6.3852 -1.7146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997614916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:21 Heat of formation + Delta-G solvation = 7.201463 kcal Electronic energy + Delta-G solvation = -29657.230374 eV Core-core repulsion = 25686.922013 eV Total energy + Delta-G solvation = -3970.308361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.96295 -41.06330 -39.44316 -37.35901 -36.69906 -34.69135 -33.76213 -32.77127 -32.25354 -31.57155 -30.18181 -28.14124 -27.15486 -26.20446 -24.65309 -24.59453 -23.88067 -22.31204 -21.62324 -20.86442 -20.18051 -19.28719 -18.72045 -18.53492 -17.64137 -17.05603 -16.78341 -16.11937 -15.91432 -15.74954 -15.62302 -15.43882 -15.27796 -14.99866 -14.65230 -14.33005 -14.27249 -14.08332 -14.05030 -13.61015 -13.17534 -13.13891 -12.92502 -12.87200 -12.78483 -12.51299 -12.46248 -12.33743 -12.33183 -12.15844 -11.92785 -11.89952 -11.67301 -11.50992 -11.21166 -11.01578 -10.99604 -10.93332 -10.79800 -10.48000 -10.11197 -8.62954 -7.84274 -5.27871 0.06500 0.73617 1.48896 1.50387 1.57021 1.86338 2.13910 2.27555 2.53886 2.96604 3.22365 3.29806 3.73258 3.76090 3.82952 3.92496 3.96346 4.08030 4.10819 4.11098 4.17851 4.41763 4.47063 4.55137 4.60024 4.67276 4.68887 4.72118 4.76300 4.80751 4.84224 4.90103 4.98638 5.00918 5.06024 5.06891 5.19540 5.22495 5.27651 5.31564 5.33652 5.36722 5.47735 5.50014 5.61769 5.71541 5.87006 6.43191 6.46863 7.11822 7.19766 7.20014 7.92424 8.42454 9.21421 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.002422 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.722552 B =11557.843128 C =12246.171919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.136 4.136 4 C 0.065 3.935 5 N -0.373 5.373 6 O 0.096 5.904 7 C 0.027 3.973 8 C -0.281 4.281 9 C 0.598 3.402 10 O -0.566 6.566 11 N -0.704 5.704 12 C 0.160 3.840 13 H 0.080 0.920 14 C -0.158 4.158 15 C -0.075 4.075 16 C -0.122 4.122 17 C 0.175 3.825 18 N -0.610 5.610 19 C -0.260 4.260 20 H 0.063 0.937 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.279 1.279 27 C 0.140 3.860 28 C -0.116 4.116 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.270 0.730 37 H 0.410 0.590 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.074 0.926 44 H -0.005 1.005 45 H 0.053 0.947 46 H 0.249 0.751 47 H 0.011 0.989 48 H 0.050 0.950 49 H 0.077 0.923 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.429 18.399 -2.436 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.049 4.049 3 C -0.194 4.194 4 C -0.097 4.097 5 N -0.080 5.080 6 O 0.038 5.962 7 C -0.055 4.055 8 C -0.289 4.289 9 C 0.385 3.615 10 O -0.446 6.446 11 N -0.356 5.356 12 C 0.055 3.945 13 H 0.098 0.902 14 C -0.216 4.216 15 C -0.094 4.094 16 C -0.161 4.161 17 C 0.050 3.950 18 N -0.334 5.334 19 C -0.391 4.391 20 H 0.081 0.919 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.205 1.205 27 C 0.015 3.985 28 C -0.155 4.155 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.285 0.715 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.013 0.987 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.228 19.505 -2.462 22.640 hybrid contribution 1.421 -1.524 0.296 2.105 sum -9.807 17.981 -2.165 20.596 Atomic orbital electron populations 1.21776 0.92520 1.01978 1.03176 1.19846 0.97016 0.96194 0.91836 1.21772 1.00794 0.93687 1.03174 1.25100 0.96554 0.93947 0.94144 1.73629 1.17754 1.14683 1.01926 1.84572 1.48149 1.29745 1.33724 1.27215 0.93799 0.93425 0.91068 1.22327 1.09867 1.01809 0.94897 1.16974 0.77592 0.79984 0.86929 1.90741 1.61002 1.69970 1.22869 1.45916 1.51005 1.27438 1.11232 1.20901 0.95359 0.89483 0.88707 0.90172 1.22186 0.96927 1.00417 1.02114 1.21186 0.98709 0.93183 0.96362 1.22097 0.98839 0.97643 0.97492 1.20617 0.96741 0.88118 0.89550 1.44322 1.24341 1.50809 1.13926 1.19453 0.99860 1.26548 0.93201 0.91920 1.25701 1.01723 1.00032 0.97007 1.70160 1.35130 1.51522 1.01118 0.85430 0.81052 0.78240 0.76255 1.20474 1.22108 1.20476 1.21046 0.92990 0.95404 0.89108 1.21938 1.01013 0.95562 0.97032 0.93286 0.89844 0.92363 0.88513 0.92358 0.93245 0.89863 0.71450 0.75189 0.93268 0.91890 0.90832 0.91398 0.92304 0.90741 0.98670 0.92857 0.94162 0.97116 0.93115 0.90404 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.18 71.98 0.66 -1.69 16 2 C -0.03 -0.60 3.33 -11.54 -0.04 -0.64 16 3 C -0.14 -2.33 9.17 71.98 0.66 -1.67 16 4 C 0.07 1.46 6.09 45.16 0.28 1.73 16 5 N -0.37 -8.21 12.01 -44.78 -0.54 -8.75 16 6 O 0.10 1.72 11.06 76.98 0.85 2.58 16 7 C 0.03 0.37 11.85 67.61 0.80 1.17 16 8 C -0.28 -5.75 6.47 -18.74 -0.12 -5.87 16 9 C 0.60 14.25 7.78 86.66 0.67 14.92 16 10 O -0.57 -17.17 14.92 -4.03 -0.06 -17.23 16 11 N -0.70 -14.31 4.99 -445.85 -2.23 -16.54 16 12 C 0.16 3.73 2.40 44.99 0.11 3.84 16 13 H 0.08 2.04 7.58 -2.39 -0.02 2.02 16 14 C -0.16 -3.69 8.78 71.98 0.63 -3.06 16 15 C -0.08 -2.03 2.14 -10.77 -0.02 -2.05 16 16 C -0.12 -3.73 4.82 30.67 0.15 -3.58 16 17 C 0.18 7.67 5.31 86.36 0.46 8.13 16 18 N -0.61 -28.96 3.00 -699.10 -2.09 -31.05 16 19 C -0.26 -13.85 9.59 84.03 0.81 -13.05 16 20 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 21 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 22 N -0.93 -53.30 11.19 21.65 0.24 -53.05 16 23 Si 0.96 43.71 29.59 68.60 2.03 45.74 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.14 5.44 6.51 86.36 0.56 6.00 16 28 C -0.12 -3.43 4.97 30.67 0.15 -3.27 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 2.30 6.29 -2.39 -0.02 2.28 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.27 0.91 7.68 -2.92 -0.02 0.89 16 37 H 0.41 6.33 6.03 -92.71 -0.56 5.77 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.47 6.46 -2.39 -0.02 1.45 16 40 H 0.07 1.69 6.46 -2.38 -0.02 1.67 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.89 6.51 -2.39 -0.02 1.87 16 43 H 0.07 1.77 6.46 -2.38 -0.02 1.75 16 44 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.05 2.70 6.04 -2.39 -0.01 2.68 16 46 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 47 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 48 H 0.05 1.96 7.93 -2.38 -0.02 1.95 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.06 1.95 6.51 -2.38 -0.02 1.94 16 Total: -1.00 -68.79 391.07 4.77 -64.02 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.39 Total: 15.63 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 6.17 Total: -1.34 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.62 Total: -109.40 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.79 Total: -14.65 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -68.79 4.77 -64.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997614916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.224 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds