Wall clock time and date at job start Tue Mar 31 2020 18:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47392 * 2 1 4 4 C 1.50700 * 109.46710 * 119.99844 * 2 1 3 5 5 C 1.41262 * 126.70545 * 274.99599 * 4 2 1 6 6 C 1.36831 * 103.84657 * 180.28572 * 5 4 2 7 7 C 1.47506 * 126.94141 * 179.74125 * 6 5 4 8 8 O 1.21580 * 120.00665 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99779 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99818 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47679 * 325.00604 * 10 9 7 12 12 C 1.53006 * 109.46878 * 85.00552 * 10 9 7 13 13 C 1.53006 * 109.47251 * 204.99870 * 10 9 7 14 14 C 1.53039 * 109.45884 * 300.03350 * 13 10 9 15 15 C 1.53193 * 109.31044 * 178.59606 * 14 13 10 16 16 N 1.46934 * 108.76484 * 54.65413 * 15 14 13 17 17 C 1.36938 * 120.62771 * 126.40189 * 16 15 14 18 18 H 1.07999 * 120.00147 * 331.82670 * 17 16 15 19 19 C 1.38814 * 119.99765 * 151.82810 * 17 16 15 20 20 N 1.31623 * 120.00028 * 343.07376 * 19 17 16 21 21 Si 1.86795 * 120.00199 * 163.07522 * 19 17 16 22 22 H 1.48494 * 109.47241 * 90.00056 * 21 19 17 23 23 H 1.48503 * 109.47170 * 210.00319 * 21 19 17 24 24 H 1.48508 * 109.46918 * 329.99768 * 21 19 17 25 25 C 1.46923 * 118.73669 * 306.38788 * 16 15 14 26 26 C 1.53032 * 109.46066 * 179.97438 * 13 10 9 27 27 O 1.34646 * 106.10838 * 359.59623 * 6 5 4 28 28 N 1.20877 * 111.47069 * 0.43729 * 27 6 5 29 29 H 1.09001 * 109.46659 * 300.00172 * 1 2 3 30 30 H 1.08996 * 109.46651 * 60.00115 * 1 2 3 31 31 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46919 * 239.99538 * 2 1 3 33 33 H 1.08994 * 109.47060 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46927 * 300.00102 * 3 2 1 35 35 H 1.08999 * 109.47193 * 59.99494 * 3 2 1 36 36 H 1.07995 * 128.07941 * 0.02562 * 5 4 2 37 37 H 0.96997 * 119.99532 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.47376 * 59.99376 * 12 10 9 39 39 H 1.08999 * 109.46940 * 180.02562 * 12 10 9 40 40 H 1.09005 * 109.46955 * 299.99508 * 12 10 9 41 41 H 1.09001 * 109.45588 * 60.00162 * 13 10 9 42 42 H 1.09001 * 109.49740 * 298.55970 * 14 13 10 43 43 H 1.08996 * 109.50133 * 58.65958 * 14 13 10 44 44 H 1.09001 * 109.60095 * 294.86762 * 15 14 13 45 45 H 1.09000 * 109.70407 * 174.50546 * 15 14 13 46 46 H 0.96991 * 120.00134 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.58498 * 293.81605 * 25 16 15 48 48 H 1.08999 * 109.69996 * 173.46524 * 25 16 15 49 49 H 1.09000 * 109.50061 * 301.33924 * 26 13 10 50 50 H 1.09006 * 109.49949 * 61.43680 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2207 -0.1478 2.5125 6 6 2.6907 -1.1914 3.2623 7 6 3.0624 -1.1610 4.6894 8 8 2.9630 -0.1273 5.3217 9 7 3.5123 -2.2792 5.2926 10 6 3.8819 -2.2489 6.7098 11 1 4.3242 -1.2820 6.9494 12 6 2.6332 -2.4649 7.5673 13 6 4.8955 -3.3586 6.9964 14 6 4.2743 -4.7160 6.6594 15 6 5.3037 -5.8215 6.9143 16 7 5.7883 -5.7065 8.2966 17 6 5.7433 -6.7817 9.1434 18 1 4.9894 -7.5434 9.0094 19 6 6.6665 -6.8925 10.1741 20 7 7.7688 -6.1736 10.1504 21 14 6.3445 -8.0618 11.5947 22 1 6.9124 -9.3963 11.2759 23 1 6.9843 -7.5329 12.8260 24 1 4.8806 -8.1858 11.8118 25 6 6.3225 -4.4161 8.7527 26 6 5.2819 -3.3263 8.4768 27 8 2.7424 -2.2524 2.4349 28 7 2.3776 -1.9619 1.3197 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.0403 0.8697 2.8264 37 1 3.5919 -3.1038 4.7881 38 1 2.1908 -3.4318 7.3277 39 1 2.9081 -2.4419 8.6217 40 1 1.9111 -1.6743 7.3631 41 1 5.7850 -3.2045 6.3855 42 1 3.3991 -4.8816 7.2876 43 1 3.9778 -4.7301 5.6106 44 1 6.1394 -5.7094 6.2235 45 1 4.8388 -6.7968 6.7700 46 1 8.4137 -6.2508 10.8707 47 1 7.2414 -4.1892 8.2119 48 1 6.5296 -4.4614 9.8219 49 1 5.7027 -2.3511 8.7218 50 1 4.3971 -3.5051 9.0878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997777648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:55 Heat of formation + Delta-G solvation = 27.910683 kcal Electronic energy + Delta-G solvation = -29213.170860 eV Core-core repulsion = 25243.760518 eV Total energy + Delta-G solvation = -3969.410342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.30107 -40.09816 -38.13417 -37.00511 -35.43897 -33.13322 -32.81536 -32.12133 -31.05591 -29.80792 -28.89506 -27.68751 -25.61482 -24.63559 -24.45431 -23.08209 -22.36395 -21.85011 -20.58422 -20.01149 -18.81552 -18.38073 -18.02367 -16.71475 -16.48717 -16.19088 -15.32611 -15.06447 -14.79447 -14.75916 -14.38534 -14.19108 -13.88609 -13.84773 -13.69472 -13.59224 -13.11609 -12.77601 -12.67626 -12.51939 -12.24907 -12.09001 -12.00405 -11.79788 -11.71349 -11.44281 -11.29876 -11.27839 -10.93844 -10.70380 -10.52035 -10.46416 -10.44820 -10.21399 -10.12162 -10.00994 -9.91509 -9.54342 -9.44286 -9.16345 -8.46708 -6.66366 -5.78955 -3.21169 0.54986 1.73224 2.37700 2.80388 3.04251 3.37120 3.44441 3.46562 3.58701 4.10635 4.49549 4.52423 4.59473 4.61878 4.73140 4.88552 4.97144 5.09068 5.09914 5.14769 5.28831 5.32670 5.36122 5.38463 5.47144 5.49661 5.61695 5.62077 5.67674 5.73658 5.75302 5.78935 5.95445 6.05607 6.11785 6.24120 6.32119 6.36164 6.46067 6.61404 6.70362 6.75079 6.80147 6.98204 7.20677 7.37587 7.66139 7.75739 7.79665 7.87689 8.45446 9.21758 9.85321 10.42076 11.29564 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.002081 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.029693 B =13453.651243 C =13795.046237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.017 3.983 5 C -0.150 4.150 6 C -0.079 4.079 7 C 0.603 3.397 8 O -0.516 6.516 9 N -0.703 5.703 10 C 0.144 3.856 11 H 0.089 0.911 12 C -0.164 4.164 13 C -0.086 4.086 14 C -0.131 4.131 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.171 3.829 26 C -0.134 4.134 27 O 0.118 5.882 28 N -0.344 5.344 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.181 0.819 37 H 0.407 0.593 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.016 0.984 45 H 0.053 0.947 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.088 0.912 49 H 0.050 0.950 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.714 14.208 -17.657 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.173 4.173 6 C -0.145 4.145 7 C 0.385 3.615 8 O -0.392 6.392 9 N -0.354 5.354 10 C 0.041 3.959 11 H 0.107 0.893 12 C -0.222 4.222 13 C -0.105 4.105 14 C -0.170 4.170 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.045 3.955 26 C -0.173 4.173 27 O 0.045 5.955 28 N -0.044 5.044 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.199 0.801 37 H 0.244 0.756 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.106 0.894 49 H 0.069 0.931 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.598 13.911 -17.916 25.946 hybrid contribution -0.082 -0.305 0.818 0.876 sum -12.680 13.607 -17.098 25.264 Atomic orbital electron populations 1.21840 0.93171 1.02558 1.02677 1.19561 0.96298 0.95526 0.92274 1.21864 1.01631 0.94134 1.02818 1.23634 1.02585 0.90454 0.97409 1.22784 1.01632 1.01407 0.91458 1.24365 1.07210 0.88364 0.94595 1.16554 0.78090 0.84610 0.82219 1.90866 1.54150 1.31113 1.63077 1.46203 1.64484 1.11903 1.12839 1.21291 0.95874 1.00864 0.77887 0.89343 1.22245 0.97349 1.01922 1.00669 1.21343 0.96675 0.93398 0.99050 1.22138 1.00210 0.95793 0.98843 1.20880 0.93984 0.95642 0.87615 1.44037 1.72999 1.07756 1.06622 1.19160 1.09398 1.01553 1.07986 0.91788 1.25044 0.94780 0.99002 1.00878 1.70026 1.08378 1.43621 1.32709 0.86325 0.77779 0.80536 0.82299 1.21446 1.21581 1.20507 1.20761 0.91130 0.82336 1.01226 1.22265 1.01614 1.00069 0.93377 1.84994 1.62243 1.34223 1.14055 1.73740 1.14165 1.17063 0.99413 0.92023 0.91365 0.92278 0.89160 0.92088 0.91353 0.91852 0.80119 0.75637 0.91855 0.90653 0.92865 0.91198 0.91568 0.93650 0.96602 0.92841 0.93654 0.96515 0.89415 0.93089 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.18 37.16 0.34 -0.50 16 2 C -0.02 -0.12 3.38 -91.77 -0.31 -0.43 16 3 C -0.15 -0.77 8.81 37.16 0.33 -0.44 16 4 C 0.02 0.17 6.20 -82.16 -0.51 -0.34 16 5 C -0.15 -1.48 10.13 -38.94 -0.39 -1.88 16 6 C -0.08 -0.89 7.29 -36.32 -0.26 -1.16 16 7 C 0.60 7.64 7.78 -12.48 -0.10 7.54 16 8 O -0.52 -7.88 16.58 5.30 0.09 -7.79 16 9 N -0.70 -8.36 5.00 -54.86 -0.27 -8.63 16 10 C 0.14 1.90 2.40 -67.93 -0.16 1.74 16 11 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 12 C -0.16 -2.10 8.78 37.16 0.33 -1.78 16 13 C -0.09 -1.29 2.14 -90.58 -0.19 -1.49 16 14 C -0.13 -2.03 4.81 -26.61 -0.13 -2.16 16 15 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 16 N -0.59 -14.29 2.99 -172.31 -0.52 -14.80 16 17 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 18 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 20 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 21 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 26 C -0.13 -2.36 4.96 -26.62 -0.13 -2.49 16 27 O 0.12 1.35 11.04 15.54 0.17 1.53 16 28 N -0.34 -3.99 12.04 33.52 0.40 -3.59 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.31 7.48 -51.93 -0.39 -0.08 16 36 H 0.18 1.47 7.65 -52.49 -0.40 1.07 16 37 H 0.41 4.29 6.67 -40.82 -0.27 4.02 16 38 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 39 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.07 6.51 -51.93 -0.34 0.73 16 43 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.06 1.11 6.51 -51.93 -0.34 0.77 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -30.52 393.49 -8.14 -38.66 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.07 Total: 1.10 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.47 Total: -3.56 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.24 Total: -52.28 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: 0.26 Total: -6.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.52 -8.14 -38.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997777648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.569 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds