Wall clock time and date at job start Tue Mar 31 2020 18:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47392 * 2 1 4 4 C 1.50700 * 109.46710 * 119.99844 * 2 1 3 5 5 C 1.41262 * 126.70545 * 274.99599 * 4 2 1 6 6 C 1.36831 * 103.84657 * 180.28572 * 5 4 2 7 7 C 1.47506 * 126.94141 * 179.74125 * 6 5 4 8 8 O 1.21580 * 120.00665 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99779 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99818 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47679 * 325.00604 * 10 9 7 12 12 C 1.53006 * 109.46878 * 85.00552 * 10 9 7 13 13 C 1.53006 * 109.47251 * 204.99870 * 10 9 7 14 14 C 1.53039 * 109.45884 * 300.03350 * 13 10 9 15 15 C 1.53193 * 109.31044 * 178.59606 * 14 13 10 16 16 N 1.46934 * 108.76484 * 54.65413 * 15 14 13 17 17 C 1.36938 * 120.62771 * 126.40189 * 16 15 14 18 18 H 1.07999 * 120.00147 * 331.82670 * 17 16 15 19 19 C 1.38814 * 119.99765 * 151.82810 * 17 16 15 20 20 N 1.31623 * 120.00028 * 343.07376 * 19 17 16 21 21 Si 1.86795 * 120.00199 * 163.07522 * 19 17 16 22 22 H 1.48494 * 109.47241 * 90.00056 * 21 19 17 23 23 H 1.48503 * 109.47170 * 210.00319 * 21 19 17 24 24 H 1.48508 * 109.46918 * 329.99768 * 21 19 17 25 25 C 1.46923 * 118.73669 * 306.38788 * 16 15 14 26 26 C 1.53032 * 109.46066 * 179.97438 * 13 10 9 27 27 O 1.34646 * 106.10838 * 359.59623 * 6 5 4 28 28 N 1.20877 * 111.47069 * 0.43729 * 27 6 5 29 29 H 1.09001 * 109.46659 * 300.00172 * 1 2 3 30 30 H 1.08996 * 109.46651 * 60.00115 * 1 2 3 31 31 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46919 * 239.99538 * 2 1 3 33 33 H 1.08994 * 109.47060 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46927 * 300.00102 * 3 2 1 35 35 H 1.08999 * 109.47193 * 59.99494 * 3 2 1 36 36 H 1.07995 * 128.07941 * 0.02562 * 5 4 2 37 37 H 0.96997 * 119.99532 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.47376 * 59.99376 * 12 10 9 39 39 H 1.08999 * 109.46940 * 180.02562 * 12 10 9 40 40 H 1.09005 * 109.46955 * 299.99508 * 12 10 9 41 41 H 1.09001 * 109.45588 * 60.00162 * 13 10 9 42 42 H 1.09001 * 109.49740 * 298.55970 * 14 13 10 43 43 H 1.08996 * 109.50133 * 58.65958 * 14 13 10 44 44 H 1.09001 * 109.60095 * 294.86762 * 15 14 13 45 45 H 1.09000 * 109.70407 * 174.50546 * 15 14 13 46 46 H 0.96991 * 120.00134 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.58498 * 293.81605 * 25 16 15 48 48 H 1.08999 * 109.69996 * 173.46524 * 25 16 15 49 49 H 1.09000 * 109.50061 * 301.33924 * 26 13 10 50 50 H 1.09006 * 109.49949 * 61.43680 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2207 -0.1478 2.5125 6 6 2.6907 -1.1914 3.2623 7 6 3.0624 -1.1610 4.6894 8 8 2.9630 -0.1273 5.3217 9 7 3.5123 -2.2792 5.2926 10 6 3.8819 -2.2489 6.7098 11 1 4.3242 -1.2820 6.9494 12 6 2.6332 -2.4649 7.5673 13 6 4.8955 -3.3586 6.9964 14 6 4.2743 -4.7160 6.6594 15 6 5.3037 -5.8215 6.9143 16 7 5.7883 -5.7065 8.2966 17 6 5.7433 -6.7817 9.1434 18 1 4.9894 -7.5434 9.0094 19 6 6.6665 -6.8925 10.1741 20 7 7.7688 -6.1736 10.1504 21 14 6.3445 -8.0618 11.5947 22 1 6.9124 -9.3963 11.2759 23 1 6.9843 -7.5329 12.8260 24 1 4.8806 -8.1858 11.8118 25 6 6.3225 -4.4161 8.7527 26 6 5.2819 -3.3263 8.4768 27 8 2.7424 -2.2524 2.4349 28 7 2.3776 -1.9619 1.3197 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.0403 0.8697 2.8264 37 1 3.5919 -3.1038 4.7881 38 1 2.1908 -3.4318 7.3277 39 1 2.9081 -2.4419 8.6217 40 1 1.9111 -1.6743 7.3631 41 1 5.7850 -3.2045 6.3855 42 1 3.3991 -4.8816 7.2876 43 1 3.9778 -4.7301 5.6106 44 1 6.1394 -5.7094 6.2235 45 1 4.8388 -6.7968 6.7700 46 1 8.4137 -6.2508 10.8707 47 1 7.2414 -4.1892 8.2119 48 1 6.5296 -4.4614 9.8219 49 1 5.7027 -2.3511 8.7218 50 1 4.3971 -3.5051 9.0878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997777648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:54 Heat of formation + Delta-G solvation = 10.428132 kcal Electronic energy + Delta-G solvation = -29213.928960 eV Core-core repulsion = 25243.760518 eV Total energy + Delta-G solvation = -3970.168442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.11276 -41.18537 -39.51351 -37.61277 -36.88168 -34.59385 -33.58283 -33.25064 -32.44146 -31.38984 -30.28495 -28.10266 -27.16289 -25.86764 -25.14996 -24.46916 -23.80485 -22.74488 -22.00722 -20.91049 -20.18334 -19.31682 -18.85975 -18.53261 -17.37882 -17.29228 -16.75801 -16.15852 -16.02115 -15.64643 -15.47684 -15.32929 -15.25669 -15.02908 -14.67643 -14.67530 -14.20355 -14.12158 -14.08247 -13.65478 -13.06696 -13.02053 -12.99095 -12.90083 -12.80022 -12.61277 -12.51329 -12.44861 -12.26920 -12.14050 -11.95324 -11.82447 -11.68609 -11.63974 -11.44807 -11.16124 -11.11520 -10.95026 -10.87485 -10.50561 -10.23346 -8.63690 -7.84858 -5.29509 -0.31847 0.97298 1.47082 1.47616 1.49049 1.58338 1.84927 2.12106 2.53185 2.92167 3.29674 3.35553 3.70444 3.76655 3.87079 3.88782 3.90863 4.05778 4.08337 4.12995 4.24730 4.37861 4.43806 4.48238 4.60428 4.63213 4.73985 4.77965 4.80449 4.83912 4.91577 4.94411 4.94917 4.97239 5.05835 5.13170 5.14920 5.25403 5.30007 5.30594 5.33249 5.34963 5.40282 5.46569 5.60408 5.69958 5.83751 6.23789 6.42514 6.84633 7.00695 7.18504 7.90997 8.41859 9.21238 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.002081 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.029693 B =13453.651243 C =13795.046237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 C -0.144 4.144 4 C 0.022 3.978 5 C -0.143 4.143 6 C -0.091 4.091 7 C 0.609 3.391 8 O -0.543 6.543 9 N -0.696 5.696 10 C 0.156 3.844 11 H 0.084 0.916 12 C -0.160 4.160 13 C -0.076 4.076 14 C -0.118 4.118 15 C 0.139 3.861 16 N -0.610 5.610 17 C -0.258 4.258 18 H 0.066 0.934 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.177 3.823 26 C -0.121 4.121 27 O 0.110 5.890 28 N -0.365 5.365 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.198 0.802 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.011 0.989 45 H 0.052 0.948 46 H 0.249 0.751 47 H -0.008 1.008 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 15.225 -19.136 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.202 4.202 4 C -0.136 4.136 5 C -0.165 4.165 6 C -0.157 4.157 7 C 0.393 3.607 8 O -0.421 6.421 9 N -0.348 5.348 10 C 0.053 3.947 11 H 0.102 0.898 12 C -0.218 4.218 13 C -0.095 4.095 14 C -0.157 4.157 15 C 0.014 3.986 16 N -0.333 5.333 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.248 4.248 20 N -0.582 5.582 21 Si 0.792 3.208 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.051 3.949 26 C -0.160 4.160 27 O 0.039 5.961 28 N -0.067 5.067 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.215 0.785 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.029 0.971 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.010 0.990 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.603 14.909 -19.421 28.508 hybrid contribution 0.540 -0.620 1.170 1.430 sum -14.063 14.289 -18.250 27.111 Atomic orbital electron populations 1.21835 0.92245 1.02138 1.03751 1.19741 0.96987 0.96173 0.90942 1.21871 1.01243 0.93116 1.03983 1.24130 1.01320 0.89868 0.98298 1.23076 1.00312 1.01826 0.91245 1.24179 1.08358 0.89017 0.94133 1.16584 0.77462 0.84137 0.82565 1.90854 1.55387 1.31998 1.63873 1.46067 1.64155 1.12220 1.12312 1.21019 0.95437 0.99543 0.78745 0.89788 1.22202 0.97006 1.02187 1.00368 1.21183 0.97224 0.94054 0.97027 1.21992 0.98564 0.94051 1.01069 1.21066 0.94796 0.97488 0.85285 1.44313 1.73199 1.07582 1.08230 1.19495 1.08908 1.02042 1.08422 0.91647 1.25780 0.94757 1.00996 1.03287 1.70182 1.09293 1.45496 1.33240 0.85330 0.77883 0.78445 0.79111 1.21341 1.22025 1.19489 1.20571 0.91946 0.83793 0.98605 1.22050 0.99907 0.98669 0.95416 1.84976 1.62733 1.34306 1.14073 1.73734 1.15200 1.18209 0.99539 0.91875 0.89404 0.93429 0.89101 0.92701 0.89575 0.91370 0.78484 0.74706 0.91430 0.90892 0.92717 0.91452 0.91516 0.90145 0.97081 0.92895 0.94228 0.98958 0.92988 0.91499 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 71.98 0.66 -0.67 16 2 C -0.02 -0.22 3.38 -11.54 -0.04 -0.26 16 3 C -0.14 -1.16 8.81 71.98 0.63 -0.53 16 4 C 0.02 0.38 6.20 43.55 0.27 0.65 16 5 C -0.14 -2.55 10.13 22.68 0.23 -2.32 16 6 C -0.09 -1.91 7.29 24.39 0.18 -1.73 16 7 C 0.61 14.40 7.78 86.69 0.67 15.07 16 8 O -0.54 -15.74 16.58 -3.97 -0.07 -15.80 16 9 N -0.70 -15.08 5.00 -445.73 -2.23 -17.30 16 10 C 0.16 3.80 2.40 45.00 0.11 3.91 16 11 H 0.08 2.20 7.58 -2.39 -0.02 2.19 16 12 C -0.16 -3.76 8.78 71.98 0.63 -3.12 16 13 C -0.08 -2.17 2.14 -10.77 -0.02 -2.19 16 14 C -0.12 -3.42 4.81 30.67 0.15 -3.27 16 15 C 0.14 5.44 6.52 86.36 0.56 6.00 16 16 N -0.61 -29.78 2.99 -699.08 -2.09 -31.87 16 17 C -0.26 -14.03 9.58 84.03 0.81 -13.22 16 18 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 19 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16 20 N -0.94 -55.34 11.19 21.65 0.24 -55.10 16 21 Si 0.96 44.75 29.59 68.60 2.03 46.77 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.18 8.29 5.30 86.36 0.46 8.75 16 26 C -0.12 -4.20 4.96 30.67 0.15 -4.05 16 27 O 0.11 2.39 11.04 65.80 0.73 3.12 16 28 N -0.36 -8.02 12.04 -48.86 -0.59 -8.61 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.49 7.48 -2.39 -0.02 0.47 16 36 H 0.20 2.76 7.65 -2.91 -0.02 2.74 16 37 H 0.41 7.70 6.67 -92.71 -0.62 7.09 16 38 H 0.07 1.53 6.46 -2.39 -0.02 1.52 16 39 H 0.07 1.76 6.46 -2.39 -0.02 1.74 16 40 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 1.98 6.51 -2.39 -0.02 1.97 16 43 H 0.08 1.80 6.46 -2.39 -0.02 1.78 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 46 H 0.25 14.28 8.31 -92.72 -0.77 13.51 16 47 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 48 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 49 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.06 2.20 6.51 -2.38 -0.02 2.19 16 Total: -1.00 -66.96 393.49 4.22 -62.74 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.33 Total: 15.56 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.87 Total: 0.50 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.66 Total: -112.89 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.66 Total: -12.68 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.96 4.22 -62.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997777648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.165 kcal (2) G-P(sol) polarization free energy of solvation -66.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds