Wall clock time and date at job start Tue Mar 31 2020 19:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47086 * 2 1 4 4 C 1.50699 * 109.47329 * 119.99585 * 2 1 3 5 5 N 1.30015 * 127.33428 * 300.02756 * 4 2 1 6 6 O 1.20665 * 112.30405 * 179.97438 * 5 4 2 7 7 C 1.33492 * 113.15277 * 0.02562 * 6 5 4 8 8 C 1.37365 * 106.34585 * 359.97438 * 7 6 5 9 9 C 1.47394 * 128.56737 * 179.97438 * 8 7 6 10 10 O 1.21610 * 119.99881 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00182 * 0.02562 * 9 8 7 12 12 C 1.46495 * 120.00277 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46860 * 34.99779 * 12 11 9 14 14 C 1.52997 * 109.47160 * 275.00492 * 12 11 9 15 15 C 1.53004 * 109.47308 * 154.99977 * 12 11 9 16 16 H 1.08999 * 109.49495 * 304.94189 * 15 12 11 17 17 C 1.53037 * 109.49730 * 184.83900 * 15 12 11 18 18 C 1.53038 * 109.53673 * 178.68550 * 17 15 12 19 19 C 1.53198 * 109.31412 * 61.36217 * 18 17 15 20 20 N 1.46922 * 108.77629 * 305.37021 * 19 18 17 21 21 C 1.36942 * 120.62813 * 233.58519 * 20 19 18 22 22 H 1.07992 * 119.99711 * 151.84487 * 21 20 19 23 23 C 1.38811 * 119.99830 * 331.84266 * 21 20 19 24 24 N 1.31621 * 119.99880 * 343.07526 * 23 21 20 25 25 Si 1.86800 * 119.99903 * 163.07470 * 23 21 20 26 26 H 1.48505 * 109.46801 * 59.99986 * 25 23 21 27 27 H 1.48499 * 109.46873 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47126 * 299.99797 * 25 23 21 29 29 C 1.46922 * 118.74215 * 53.60375 * 20 19 18 30 30 H 1.09000 * 109.47454 * 299.99919 * 1 2 3 31 31 H 1.09000 * 109.46879 * 60.00800 * 1 2 3 32 32 H 1.09007 * 109.46988 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47804 * 239.99666 * 2 1 3 34 34 H 1.08997 * 109.47299 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.46601 * 299.99581 * 3 2 1 36 36 H 1.08997 * 109.47555 * 59.99385 * 3 2 1 37 37 H 1.08003 * 126.82879 * 180.02562 * 7 6 5 38 38 H 0.97004 * 119.99831 * 0.02562 * 11 9 8 39 39 H 1.09010 * 109.46953 * 299.99586 * 14 12 11 40 40 H 1.08998 * 109.47731 * 59.99528 * 14 12 11 41 41 H 1.09004 * 109.47464 * 180.02562 * 14 12 11 42 42 H 1.09001 * 109.46087 * 298.70719 * 17 15 12 43 43 H 1.08993 * 109.45907 * 58.66445 * 17 15 12 44 44 H 1.09008 * 109.49762 * 301.41540 * 18 17 15 45 45 H 1.08995 * 109.52651 * 181.33518 * 18 17 15 46 46 H 1.08996 * 109.58780 * 185.57488 * 19 18 17 47 47 H 1.09000 * 109.58045 * 65.15447 * 19 18 17 48 48 H 0.97000 * 119.99712 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.59111 * 186.60475 * 29 20 19 50 50 H 1.09001 * 109.58626 * 66.17632 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.8075 -0.3930 2.4711 6 8 2.3432 -1.1511 3.2420 7 6 3.0297 -2.1207 2.6331 8 6 2.8814 -1.9105 1.2837 9 6 3.4367 -2.6935 0.1653 10 8 3.2043 -2.3640 -0.9820 11 7 4.2019 -3.7747 0.4141 12 6 4.7543 -4.5527 -0.6976 13 1 5.0037 -3.8833 -1.5209 14 6 3.7188 -5.5759 -1.1681 15 6 6.0167 -5.2814 -0.2325 16 1 6.7203 -4.5606 0.1840 17 6 6.6612 -5.9967 -1.4220 18 6 7.9417 -6.6988 -0.9645 19 6 7.5935 -7.7457 0.0984 20 7 6.8450 -7.0908 1.1798 21 6 7.2563 -7.2042 2.4811 22 1 7.0321 -6.4196 3.1885 23 6 7.9613 -8.3276 2.8907 24 7 7.9518 -9.4163 2.1512 25 14 8.9236 -8.2940 4.4914 26 1 7.9977 -8.0203 5.6198 27 1 9.5828 -9.6082 4.7003 28 1 9.9546 -7.2272 4.4270 29 6 5.6466 -6.3122 0.8387 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.5896 -2.9133 3.1071 38 1 4.3869 -4.0378 1.3292 39 1 3.4693 -6.2454 -0.3448 40 1 2.8194 -5.0569 -1.4995 41 1 4.1299 -6.1552 -1.9950 42 1 5.9657 -6.7344 -1.8224 43 1 6.9030 -5.2684 -2.1960 44 1 8.6277 -5.9650 -0.5413 45 1 8.4131 -7.1884 -1.8166 46 1 8.5101 -8.1789 0.4987 47 1 6.9809 -8.5293 -0.3475 48 1 8.4442 -10.2015 2.4376 49 1 5.2786 -5.7996 1.7275 50 1 4.8752 -6.9789 0.4532 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025443741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:44 Heat of formation + Delta-G solvation = 24.324773 kcal Electronic energy + Delta-G solvation = -29825.958784 eV Core-core repulsion = 25856.392945 eV Total energy + Delta-G solvation = -3969.565838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.09813 -39.93325 -38.09163 -36.48774 -35.22358 -33.41732 -32.68056 -31.86342 -30.79096 -30.51460 -28.15663 -27.40917 -25.39309 -25.34540 -23.83516 -23.54162 -22.24581 -20.94877 -20.54143 -19.93362 -18.86208 -18.17396 -17.85300 -16.89755 -16.53626 -15.98610 -15.08564 -15.07436 -14.90924 -14.80748 -14.40166 -14.14036 -13.92870 -13.57753 -13.52618 -13.39335 -13.14754 -12.60385 -12.47126 -12.44880 -12.33096 -11.99617 -11.85881 -11.69324 -11.56381 -11.56330 -11.06807 -11.02123 -10.96940 -10.62034 -10.55808 -10.26308 -10.20621 -10.13534 -10.03378 -9.94864 -9.92094 -9.66870 -9.45893 -9.03905 -8.51620 -6.72280 -5.84988 -3.28265 0.87725 1.61549 2.71961 3.12099 3.15185 3.32905 3.39904 3.40189 3.80202 4.02966 4.42459 4.62349 4.74114 4.87548 4.87976 4.94287 5.02945 5.16227 5.25312 5.33737 5.36179 5.38007 5.50343 5.52938 5.56795 5.63030 5.65103 5.68470 5.79593 5.81123 5.94426 5.96395 6.07054 6.14030 6.16313 6.19618 6.28161 6.42070 6.51206 6.55733 6.65343 6.71740 6.81593 6.91553 7.34909 7.43873 7.61898 7.72013 8.00058 8.11381 8.38488 9.14556 9.78123 10.34838 11.23127 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002839 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.961131 B = 9858.921290 C =11197.489694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 C -0.142 4.142 4 C 0.077 3.923 5 N -0.357 5.357 6 O 0.097 5.903 7 C -0.004 4.004 8 C -0.253 4.253 9 C 0.595 3.405 10 O -0.534 6.534 11 N -0.712 5.712 12 C 0.151 3.849 13 H 0.084 0.916 14 C -0.166 4.166 15 C -0.114 4.114 16 H 0.072 0.928 17 C -0.100 4.100 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.591 5.591 21 C -0.257 4.257 22 H 0.064 0.936 23 C 0.005 3.995 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.151 3.849 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.228 0.772 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.018 0.982 48 H 0.255 0.745 49 H 0.045 0.955 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 14.721 -4.436 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 C -0.200 4.200 4 C -0.086 4.086 5 N -0.063 5.063 6 O 0.037 5.963 7 C -0.086 4.086 8 C -0.260 4.260 9 C 0.381 3.619 10 O -0.412 6.412 11 N -0.363 5.363 12 C 0.047 3.953 13 H 0.102 0.898 14 C -0.224 4.224 15 C -0.135 4.135 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.386 4.386 22 H 0.081 0.919 23 C -0.194 4.194 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.210 1.210 29 C 0.025 3.975 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.236 0.764 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.036 0.964 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.054 15.716 -4.574 19.751 hybrid contribution 1.118 -0.882 0.892 1.680 sum -9.937 14.834 -3.682 18.230 Atomic orbital electron populations 1.21811 0.93490 1.02285 1.02380 1.19814 0.96175 0.95705 0.92804 1.21812 1.01372 0.94414 1.02381 1.24820 0.96378 0.93601 0.93781 1.73622 1.16915 1.13877 1.01876 1.84592 1.48266 1.29533 1.33876 1.26520 0.95832 0.94158 0.92131 1.22422 1.08114 1.01302 0.94157 1.16826 0.78268 0.79791 0.86993 1.90751 1.59564 1.69435 1.21432 1.46038 1.51208 1.28032 1.11008 1.21087 0.93405 0.92271 0.88518 0.89763 1.22268 0.98882 0.99122 1.02087 1.21975 0.94672 0.98368 0.98436 0.90912 1.21414 0.97882 0.98646 0.95877 1.22182 0.96262 1.00186 0.99548 1.20791 0.97470 0.90874 0.86461 1.44004 1.25294 1.58682 1.03302 1.19090 1.32462 1.00616 0.86445 0.91863 1.25039 1.01886 0.94639 0.97877 1.70022 1.43586 1.01669 1.39181 0.86394 0.80285 0.76798 0.83410 1.20868 1.21619 1.21020 1.20991 0.90115 0.92143 0.94270 0.92291 0.91539 0.92449 0.86881 0.92448 0.91544 0.92285 0.75620 0.76424 0.91520 0.92813 0.91243 0.92188 0.93493 0.92808 0.93190 0.89619 0.96424 0.93520 0.93615 0.95595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 2 C -0.03 -0.28 3.33 -91.77 -0.31 -0.58 16 3 C -0.14 -1.32 9.18 37.16 0.34 -0.98 16 4 C 0.08 0.93 6.09 -79.76 -0.49 0.44 16 5 N -0.36 -4.32 12.01 34.78 0.42 -3.91 16 6 O 0.10 1.03 11.06 18.65 0.21 1.24 16 7 C 0.00 -0.04 11.85 30.41 0.36 0.32 16 8 C -0.25 -2.94 6.47 -102.89 -0.67 -3.61 16 9 C 0.60 7.87 7.78 -12.53 -0.10 7.78 16 10 O -0.53 -8.47 14.92 5.27 0.08 -8.40 16 11 N -0.71 -8.65 5.01 -54.89 -0.27 -8.92 16 12 C 0.15 2.02 2.35 -67.93 -0.16 1.86 16 13 H 0.08 1.20 7.58 -51.93 -0.39 0.80 16 14 C -0.17 -2.16 8.76 37.16 0.33 -1.83 16 15 C -0.11 -1.74 2.27 -90.50 -0.21 -1.95 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 17 C -0.10 -1.55 4.89 -26.69 -0.13 -1.68 16 18 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 19 C 0.17 3.84 5.30 -3.71 -0.02 3.82 16 20 N -0.59 -13.71 2.99 -172.32 -0.52 -14.23 16 21 C -0.26 -6.61 9.58 -15.06 -0.14 -6.75 16 22 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 23 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 24 N -0.90 -25.23 11.20 55.49 0.62 -24.60 16 25 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C 0.15 2.78 5.26 -3.71 -0.02 2.76 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.11 1.37 6.29 -51.93 -0.33 1.04 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.23 1.15 7.68 -52.48 -0.40 0.75 16 38 H 0.40 4.22 6.46 -40.82 -0.26 3.95 16 39 H 0.07 0.90 6.23 -51.92 -0.32 0.57 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.87 6.59 -51.93 -0.34 0.53 16 42 H 0.06 0.92 6.62 -51.93 -0.34 0.57 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.05 0.78 6.75 -51.93 -0.35 0.43 16 50 H 0.03 0.49 6.06 -51.93 -0.31 0.18 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -30.61 391.60 -7.71 -38.31 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.00 Total: 2.87 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.11 Total: -4.06 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.25 Total: -51.66 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.28 Total: -7.16 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.61 -7.71 -38.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025443741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.638 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds