Wall clock time and date at job start Tue Mar 31 2020 19:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46833 * 2 1 4 4 C 1.50697 * 109.47177 * 119.99511 * 2 1 3 5 5 N 1.30021 * 127.33453 * 300.04699 * 4 2 1 6 6 O 1.20659 * 112.29979 * 179.97438 * 5 4 2 7 7 C 1.33493 * 113.15766 * 359.72038 * 6 5 4 8 8 C 1.37361 * 106.34119 * 0.44530 * 7 6 5 9 9 C 1.47398 * 128.56553 * 179.85490 * 8 7 6 10 10 O 1.21612 * 119.99855 * 179.68471 * 9 8 7 11 11 N 1.34779 * 119.99860 * 359.67987 * 9 8 7 12 12 C 1.46501 * 119.99662 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47211 * 34.99891 * 12 11 9 14 14 C 1.52997 * 109.46818 * 274.99943 * 12 11 9 15 15 C 1.52996 * 109.46843 * 154.99937 * 12 11 9 16 16 H 1.09002 * 109.52298 * 60.08136 * 15 12 11 17 17 C 1.53047 * 109.49837 * 180.15722 * 15 12 11 18 18 C 1.53350 * 109.60670 * 181.32578 * 17 15 12 19 19 C 1.53183 * 109.15064 * 298.71391 * 18 17 15 20 20 N 1.46925 * 108.89687 * 54.57998 * 19 18 17 21 21 C 1.36934 * 120.63472 * 126.34115 * 20 19 18 22 22 H 1.08001 * 119.99754 * 332.55305 * 21 20 19 23 23 C 1.38811 * 120.00585 * 152.55692 * 21 20 19 24 24 N 1.31612 * 120.00286 * 159.33252 * 23 21 20 25 25 Si 1.86806 * 119.99505 * 339.32877 * 23 21 20 26 26 H 1.48501 * 109.46946 * 92.92636 * 25 23 21 27 27 H 1.48496 * 109.46962 * 212.93106 * 25 23 21 28 28 H 1.48503 * 109.47163 * 332.92869 * 25 23 21 29 29 C 1.46929 * 118.73802 * 306.32031 * 20 19 18 30 30 H 1.08996 * 109.47243 * 300.00550 * 1 2 3 31 31 H 1.09002 * 109.46655 * 60.00370 * 1 2 3 32 32 H 1.09000 * 109.46507 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47516 * 239.99881 * 2 1 3 34 34 H 1.09002 * 109.46890 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46800 * 299.99940 * 3 2 1 36 36 H 1.08999 * 109.47167 * 59.99667 * 3 2 1 37 37 H 1.07999 * 126.83186 * 180.30941 * 7 6 5 38 38 H 0.96997 * 119.99627 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47196 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.47187 * 299.99963 * 14 12 11 41 41 H 1.08998 * 109.47702 * 60.00323 * 14 12 11 42 42 H 1.09000 * 109.45647 * 301.34344 * 17 15 12 43 43 H 1.09000 * 109.45570 * 61.30756 * 17 15 12 44 44 H 1.09004 * 109.68089 * 178.74458 * 18 17 15 45 45 H 1.09000 * 109.47420 * 58.55606 * 18 17 15 46 46 H 1.09006 * 109.58732 * 294.72093 * 19 18 17 47 47 H 1.09000 * 109.58904 * 174.44143 * 19 18 17 48 48 H 0.97001 * 119.99805 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.59035 * 173.39179 * 29 20 19 50 50 H 1.09001 * 109.58707 * 293.67756 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.8072 -0.3932 2.4712 6 8 2.3430 -1.1512 3.2420 7 6 3.0245 -2.1243 2.6331 8 6 2.8814 -1.9104 1.2838 9 6 3.4364 -2.6937 0.1653 10 8 3.2041 -2.3642 -0.9820 11 7 4.2014 -3.7751 0.4142 12 6 4.7535 -4.5533 -0.6975 13 1 5.0029 -3.8840 -1.5210 14 6 3.7176 -5.5763 -1.1678 15 6 6.0157 -5.2822 -0.2325 16 1 5.7668 -5.9528 0.5900 17 6 6.5952 -6.0923 -1.3945 18 6 7.8418 -6.8503 -0.9221 19 6 8.8974 -5.8418 -0.4583 20 7 8.3021 -4.9634 0.5581 21 6 8.9001 -4.8046 1.7797 22 1 9.5143 -5.5940 2.1870 23 6 8.7167 -3.6290 2.4946 24 7 8.9256 -3.6095 3.7939 25 14 8.1735 -2.0745 1.6125 26 1 6.6930 -1.9695 1.6609 27 1 8.7758 -0.8915 2.2781 28 1 8.6200 -2.1268 0.1971 29 6 7.0533 -4.2584 0.2386 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.5799 -2.9201 3.1070 38 1 4.3870 -4.0376 1.3293 39 1 4.1284 -6.1556 -1.9946 40 1 3.4681 -6.2456 -0.3444 41 1 2.8184 -5.0570 -1.4991 42 1 5.8498 -6.8049 -1.7476 43 1 6.8668 -5.4184 -2.2070 44 1 8.2427 -7.4451 -1.7428 45 1 7.5759 -7.5060 -0.0930 46 1 9.2304 -5.2448 -1.3073 47 1 9.7470 -6.3732 -0.0296 48 1 8.7971 -2.7880 4.2935 49 1 6.6845 -3.7471 1.1277 50 1 7.2365 -3.5306 -0.5519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025443744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:47 Heat of formation + Delta-G solvation = 27.698360 kcal Electronic energy + Delta-G solvation = -30624.967943 eV Core-core repulsion = 26655.548394 eV Total energy + Delta-G solvation = -3969.419549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.98147 -39.89495 -38.18955 -36.42173 -35.31633 -33.39699 -32.75996 -31.80065 -31.19339 -30.52046 -28.97497 -27.32917 -25.57596 -24.93958 -23.73690 -23.34521 -22.50285 -20.79884 -20.60616 -19.94691 -19.45747 -18.19438 -17.73461 -16.89360 -16.61833 -16.05760 -15.52851 -14.99846 -14.90718 -14.71092 -14.26862 -14.06216 -13.96161 -13.60413 -13.48202 -13.39457 -13.26873 -12.93062 -12.83516 -12.43837 -12.39243 -12.20298 -11.89028 -11.69298 -11.53014 -11.47832 -11.43223 -11.29221 -10.96541 -10.82440 -10.56892 -10.49266 -10.17070 -10.06036 -10.03225 -9.88547 -9.82577 -9.75529 -9.50304 -9.01321 -8.68425 -7.03807 -6.03037 -3.38374 0.99106 1.71859 2.81220 3.18751 3.21064 3.24653 3.43552 3.46626 3.89947 4.13338 4.43896 4.66098 4.73761 4.85768 4.96080 4.98389 5.05334 5.08562 5.12823 5.24396 5.31121 5.36159 5.41617 5.45544 5.53496 5.58692 5.60683 5.64611 5.76571 5.82352 5.87377 5.89197 5.96176 6.02961 6.05087 6.07663 6.21675 6.23313 6.26451 6.30469 6.45823 6.52112 6.57015 6.65394 6.68215 6.92016 7.47876 7.89009 8.10236 8.17598 8.25496 8.87236 9.64485 10.03261 11.12702 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.004175 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.878880 B = 6704.677606 C = 8051.380825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C -0.143 4.143 4 C 0.078 3.922 5 N -0.357 5.357 6 O 0.097 5.903 7 C 0.000 4.000 8 C -0.255 4.255 9 C 0.598 3.402 10 O -0.534 6.534 11 N -0.713 5.713 12 C 0.147 3.853 13 H 0.088 0.912 14 C -0.161 4.161 15 C -0.113 4.113 16 H 0.079 0.921 17 C -0.103 4.103 18 C -0.134 4.134 19 C 0.145 3.855 20 N -0.606 5.606 21 C -0.258 4.258 22 H 0.086 0.914 23 C 0.025 3.975 24 N -0.907 5.907 25 Si 0.878 3.122 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.273 1.273 29 C 0.135 3.865 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.227 0.773 38 H 0.401 0.599 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.021 0.979 47 H 0.062 0.938 48 H 0.263 0.737 49 H 0.071 0.929 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.476 -0.044 -7.500 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.201 4.201 4 C -0.086 4.086 5 N -0.063 5.063 6 O 0.038 5.962 7 C -0.082 4.082 8 C -0.262 4.262 9 C 0.385 3.615 10 O -0.412 6.412 11 N -0.363 5.363 12 C 0.043 3.957 13 H 0.106 0.894 14 C -0.219 4.219 15 C -0.134 4.134 16 H 0.097 0.903 17 C -0.141 4.141 18 C -0.173 4.173 19 C 0.019 3.981 20 N -0.329 5.329 21 C -0.387 4.387 22 H 0.104 0.896 23 C -0.174 4.174 24 N -0.550 5.550 25 Si 0.709 3.291 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.198 1.198 29 C 0.009 3.991 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.244 0.756 38 H 0.236 0.764 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.039 0.961 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -15.255 1.233 -7.524 17.054 hybrid contribution 0.353 0.246 -0.279 0.513 sum -14.902 1.479 -7.802 16.885 Atomic orbital electron populations 1.21803 0.93507 1.02170 1.02355 1.19810 0.96112 0.95752 0.92794 1.21822 1.01533 0.94378 1.02351 1.24798 0.96362 0.93585 0.93814 1.73606 1.17016 1.13861 1.01830 1.84583 1.48492 1.29281 1.33845 1.26530 0.95475 0.94083 0.92161 1.22388 1.08254 1.01448 0.94159 1.16794 0.78111 0.79609 0.87026 1.90737 1.59820 1.69250 1.21387 1.45950 1.51193 1.28337 1.10846 1.21096 0.92868 0.92679 0.89053 0.89401 1.22199 0.99170 0.98935 1.01581 1.22005 0.93732 0.98660 0.98964 0.90255 1.21503 0.97331 0.98349 0.96880 1.22043 0.96649 0.98535 1.00119 1.20959 0.94235 0.91445 0.91418 1.44350 1.22082 1.52836 1.13631 1.18951 1.28089 0.99877 0.91745 0.89592 1.25252 0.99287 0.97323 0.95494 1.69830 1.52171 1.27573 1.05396 0.87052 0.77209 0.84482 0.80342 1.21731 1.23192 1.19762 1.21327 0.86195 0.92885 0.98658 0.92280 0.91578 0.92523 0.86918 0.92380 0.91532 0.92246 0.75639 0.76404 0.91159 0.92447 0.92440 0.92393 0.92399 0.92549 0.91948 0.96067 0.91963 0.92749 0.91135 0.95864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 2 C -0.03 -0.32 3.33 -91.77 -0.31 -0.62 16 3 C -0.14 -1.62 9.18 37.16 0.34 -1.28 16 4 C 0.08 1.10 6.09 -79.76 -0.49 0.62 16 5 N -0.36 -5.11 12.01 34.78 0.42 -4.69 16 6 O 0.10 1.28 11.06 18.65 0.21 1.49 16 7 C 0.00 0.00 11.85 30.41 0.36 0.36 16 8 C -0.26 -3.66 6.47 -102.89 -0.67 -4.32 16 9 C 0.60 9.31 7.78 -12.53 -0.10 9.21 16 10 O -0.53 -9.43 14.92 5.27 0.08 -9.35 16 11 N -0.71 -10.16 4.47 -54.89 -0.25 -10.41 16 12 C 0.15 2.09 2.16 -67.93 -0.15 1.94 16 13 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 14 C -0.16 -1.88 9.14 37.16 0.34 -1.54 16 15 C -0.11 -1.76 1.98 -90.50 -0.18 -1.94 16 16 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.10 -1.43 4.86 -26.53 -0.13 -1.56 16 18 C -0.13 -2.01 6.11 -26.46 -0.16 -2.17 16 19 C 0.15 2.72 6.50 -3.72 -0.02 2.70 16 20 N -0.61 -13.66 2.77 -172.32 -0.48 -14.14 16 21 C -0.26 -6.91 10.03 -15.06 -0.15 -7.06 16 22 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 23 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 24 N -0.91 -26.62 13.97 55.49 0.78 -25.85 16 25 Si 0.88 21.97 24.34 -169.99 -4.14 17.84 16 26 H -0.29 -6.80 6.62 56.52 0.37 -6.43 16 27 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 28 H -0.27 -6.92 6.64 56.52 0.38 -6.54 16 29 C 0.14 2.75 3.25 -3.71 -0.01 2.73 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 1.55 6.29 -51.93 -0.33 1.23 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.23 1.90 7.68 -52.49 -0.40 1.50 16 38 H 0.40 5.15 7.60 -40.82 -0.31 4.84 16 39 H 0.07 0.74 6.40 -51.93 -0.33 0.41 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.07 1.54 4.01 -51.93 -0.21 1.33 16 50 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -31.99 390.17 -6.76 -38.75 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.19 Total: 3.90 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.07 Total: -3.43 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.47 Total: -55.08 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.28 Total: -7.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.99 -6.76 -38.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025443744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.453 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds