Wall clock time and date at job start Tue Mar 31 2020 19:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46833 * 2 1 4 4 C 1.50697 * 109.47177 * 119.99511 * 2 1 3 5 5 N 1.30021 * 127.33453 * 300.04699 * 4 2 1 6 6 O 1.20659 * 112.29979 * 179.97438 * 5 4 2 7 7 C 1.33493 * 113.15766 * 359.72038 * 6 5 4 8 8 C 1.37361 * 106.34119 * 0.44530 * 7 6 5 9 9 C 1.47398 * 128.56553 * 179.85490 * 8 7 6 10 10 O 1.21612 * 119.99855 * 179.68471 * 9 8 7 11 11 N 1.34779 * 119.99860 * 359.67987 * 9 8 7 12 12 C 1.46501 * 119.99662 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47211 * 34.99891 * 12 11 9 14 14 C 1.52997 * 109.46818 * 274.99943 * 12 11 9 15 15 C 1.52996 * 109.46843 * 154.99937 * 12 11 9 16 16 H 1.09002 * 109.52298 * 60.08136 * 15 12 11 17 17 C 1.53047 * 109.49837 * 180.15722 * 15 12 11 18 18 C 1.53350 * 109.60670 * 181.32578 * 17 15 12 19 19 C 1.53183 * 109.15064 * 298.71391 * 18 17 15 20 20 N 1.46925 * 108.89687 * 54.57998 * 19 18 17 21 21 C 1.36934 * 120.63472 * 126.34115 * 20 19 18 22 22 H 1.08001 * 119.99754 * 332.55305 * 21 20 19 23 23 C 1.38811 * 120.00585 * 152.55692 * 21 20 19 24 24 N 1.31612 * 120.00286 * 159.33252 * 23 21 20 25 25 Si 1.86806 * 119.99505 * 339.32877 * 23 21 20 26 26 H 1.48501 * 109.46946 * 92.92636 * 25 23 21 27 27 H 1.48496 * 109.46962 * 212.93106 * 25 23 21 28 28 H 1.48503 * 109.47163 * 332.92869 * 25 23 21 29 29 C 1.46929 * 118.73802 * 306.32031 * 20 19 18 30 30 H 1.08996 * 109.47243 * 300.00550 * 1 2 3 31 31 H 1.09002 * 109.46655 * 60.00370 * 1 2 3 32 32 H 1.09000 * 109.46507 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47516 * 239.99881 * 2 1 3 34 34 H 1.09002 * 109.46890 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46800 * 299.99940 * 3 2 1 36 36 H 1.08999 * 109.47167 * 59.99667 * 3 2 1 37 37 H 1.07999 * 126.83186 * 180.30941 * 7 6 5 38 38 H 0.96997 * 119.99627 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47196 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.47187 * 299.99963 * 14 12 11 41 41 H 1.08998 * 109.47702 * 60.00323 * 14 12 11 42 42 H 1.09000 * 109.45647 * 301.34344 * 17 15 12 43 43 H 1.09000 * 109.45570 * 61.30756 * 17 15 12 44 44 H 1.09004 * 109.68089 * 178.74458 * 18 17 15 45 45 H 1.09000 * 109.47420 * 58.55606 * 18 17 15 46 46 H 1.09006 * 109.58732 * 294.72093 * 19 18 17 47 47 H 1.09000 * 109.58904 * 174.44143 * 19 18 17 48 48 H 0.97001 * 119.99805 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.59035 * 173.39179 * 29 20 19 50 50 H 1.09001 * 109.58707 * 293.67756 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.8072 -0.3932 2.4712 6 8 2.3430 -1.1512 3.2420 7 6 3.0245 -2.1243 2.6331 8 6 2.8814 -1.9104 1.2838 9 6 3.4364 -2.6937 0.1653 10 8 3.2041 -2.3642 -0.9820 11 7 4.2014 -3.7751 0.4142 12 6 4.7535 -4.5533 -0.6975 13 1 5.0029 -3.8840 -1.5210 14 6 3.7176 -5.5763 -1.1678 15 6 6.0157 -5.2822 -0.2325 16 1 5.7668 -5.9528 0.5900 17 6 6.5952 -6.0923 -1.3945 18 6 7.8418 -6.8503 -0.9221 19 6 8.8974 -5.8418 -0.4583 20 7 8.3021 -4.9634 0.5581 21 6 8.9001 -4.8046 1.7797 22 1 9.5143 -5.5940 2.1870 23 6 8.7167 -3.6290 2.4946 24 7 8.9256 -3.6095 3.7939 25 14 8.1735 -2.0745 1.6125 26 1 6.6930 -1.9695 1.6609 27 1 8.7758 -0.8915 2.2781 28 1 8.6200 -2.1268 0.1971 29 6 7.0533 -4.2584 0.2386 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.5799 -2.9201 3.1070 38 1 4.3870 -4.0376 1.3293 39 1 4.1284 -6.1556 -1.9946 40 1 3.4681 -6.2456 -0.3444 41 1 2.8184 -5.0570 -1.4991 42 1 5.8498 -6.8049 -1.7476 43 1 6.8668 -5.4184 -2.2070 44 1 8.2427 -7.4451 -1.7428 45 1 7.5759 -7.5060 -0.0930 46 1 9.2304 -5.2448 -1.3073 47 1 9.7470 -6.3732 -0.0296 48 1 8.7971 -2.7880 4.2935 49 1 6.6845 -3.7471 1.1277 50 1 7.2365 -3.5306 -0.5519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025443744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:46 Heat of formation + Delta-G solvation = 7.601525 kcal Electronic energy + Delta-G solvation = -30625.839407 eV Core-core repulsion = 26655.548394 eV Total energy + Delta-G solvation = -3970.291013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.03323 -41.10453 -39.57409 -37.42235 -36.66214 -34.91913 -34.04260 -32.95448 -32.66252 -31.95492 -30.20282 -28.18236 -27.15432 -26.23346 -24.71370 -24.63088 -24.05468 -22.10267 -21.75656 -21.00468 -20.79740 -19.30275 -18.81112 -18.77242 -17.75868 -17.31523 -17.14997 -16.17920 -15.96788 -15.84217 -15.80257 -15.47814 -15.13007 -15.07719 -14.75710 -14.53467 -14.36866 -14.32883 -14.09458 -13.88584 -13.61596 -13.29664 -13.21187 -12.91599 -12.75066 -12.67207 -12.53598 -12.39329 -12.37982 -12.11478 -11.95386 -11.92905 -11.68484 -11.55608 -11.34531 -11.24058 -11.08231 -11.06701 -10.88475 -10.65130 -10.17014 -8.91676 -8.18199 -5.47838 -0.04059 0.65444 1.19929 1.37323 1.42465 1.77434 2.05419 2.18659 2.34945 2.88567 3.03120 3.14032 3.31332 3.69401 3.76471 3.84859 3.93653 3.99228 4.04736 4.06196 4.11239 4.28942 4.38506 4.42780 4.44901 4.52116 4.63407 4.65147 4.65604 4.71628 4.79979 4.80450 4.85466 4.88037 5.00182 5.00822 5.01900 5.11517 5.18396 5.19510 5.22106 5.26604 5.30225 5.43904 5.47329 5.61778 5.87490 6.13011 6.35300 6.92195 7.01245 7.09025 7.62645 8.04193 9.01597 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.004175 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.878880 B = 6704.677606 C = 8051.380825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.029 4.029 3 C -0.139 4.139 4 C 0.069 3.931 5 N -0.370 5.370 6 O 0.095 5.905 7 C 0.021 3.979 8 C -0.285 4.285 9 C 0.598 3.402 10 O -0.561 6.561 11 N -0.710 5.710 12 C 0.151 3.849 13 H 0.072 0.928 14 C -0.151 4.151 15 C -0.099 4.099 16 H 0.082 0.918 17 C -0.101 4.101 18 C -0.124 4.124 19 C 0.135 3.865 20 N -0.620 5.620 21 C -0.244 4.244 22 H 0.057 0.943 23 C -0.019 4.019 24 N -0.949 5.949 25 Si 0.931 3.069 26 H -0.269 1.269 27 H -0.318 1.318 28 H -0.280 1.280 29 C 0.133 3.867 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.261 0.739 38 H 0.408 0.592 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.026 0.974 47 H 0.053 0.947 48 H 0.262 0.738 49 H 0.053 0.947 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 -1.099 -9.037 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 C -0.197 4.197 4 C -0.094 4.094 5 N -0.078 5.078 6 O 0.037 5.963 7 C -0.061 4.061 8 C -0.292 4.292 9 C 0.385 3.615 10 O -0.441 6.441 11 N -0.361 5.361 12 C 0.046 3.954 13 H 0.090 0.910 14 C -0.209 4.209 15 C -0.120 4.120 16 H 0.100 0.900 17 C -0.139 4.139 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.075 0.925 23 C -0.215 4.215 24 N -0.595 5.595 25 Si 0.762 3.238 26 H -0.195 1.195 27 H -0.247 1.247 28 H -0.205 1.205 29 C 0.008 3.992 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.276 0.724 38 H 0.244 0.756 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -16.893 0.147 -9.086 19.182 hybrid contribution 0.955 0.500 0.185 1.094 sum -15.938 0.647 -8.901 18.266 Atomic orbital electron populations 1.21760 0.91850 1.02205 1.03314 1.19884 0.97495 0.95938 0.91524 1.21800 1.00469 0.93951 1.03435 1.25159 0.96220 0.93733 0.94329 1.73599 1.17785 1.14501 1.01895 1.84566 1.48490 1.29423 1.33775 1.27122 0.93873 0.93635 0.91468 1.22428 1.09740 1.02223 0.94827 1.16931 0.77954 0.79677 0.86947 1.90717 1.60949 1.69996 1.22448 1.45971 1.50704 1.28055 1.11363 1.21070 0.93026 0.92821 0.88445 0.91020 1.22120 0.97901 0.98280 1.02575 1.21833 0.92801 0.97448 0.99900 0.89972 1.21548 0.97623 0.98748 0.95951 1.21939 0.95811 0.97497 1.01002 1.21193 0.95467 0.91788 0.90477 1.44514 1.23206 1.53564 1.13137 1.18913 1.26694 0.98707 0.93015 0.92477 1.25659 1.00614 0.99393 0.95789 1.69924 1.54888 1.28033 1.06643 0.86191 0.78003 0.81123 0.78462 1.19542 1.24739 1.20548 1.21308 0.86539 0.93834 0.97518 0.92338 0.89543 0.92942 0.88403 0.93963 0.89338 0.92248 0.72356 0.75614 0.89286 0.91177 0.93233 0.88858 0.92223 0.89346 0.92382 0.95625 0.92830 0.92903 0.92875 0.97158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.18 71.98 0.66 -1.95 16 2 C -0.03 -0.71 3.33 -11.54 -0.04 -0.75 16 3 C -0.14 -3.04 9.18 71.98 0.66 -2.38 16 4 C 0.07 1.92 6.09 45.15 0.28 2.20 16 5 N -0.37 -10.34 12.01 -44.77 -0.54 -10.88 16 6 O 0.09 2.39 11.06 76.98 0.85 3.24 16 7 C 0.02 0.48 11.85 67.61 0.80 1.28 16 8 C -0.28 -7.91 6.47 -18.74 -0.12 -8.03 16 9 C 0.60 18.06 7.78 86.65 0.67 18.74 16 10 O -0.56 -19.61 14.92 -4.07 -0.06 -19.67 16 11 N -0.71 -19.07 4.47 -445.83 -1.99 -21.06 16 12 C 0.15 3.92 2.16 44.99 0.10 4.02 16 13 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 14 C -0.15 -3.03 9.14 71.98 0.66 -2.37 16 15 C -0.10 -2.84 1.98 -10.71 -0.02 -2.86 16 16 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 17 C -0.10 -2.42 4.86 30.73 0.15 -2.27 16 18 C -0.12 -3.28 6.11 30.77 0.19 -3.10 16 19 C 0.14 4.88 6.50 86.36 0.56 5.44 16 20 N -0.62 -27.56 2.77 -699.10 -1.94 -29.50 16 21 C -0.24 -13.18 10.03 84.03 0.84 -12.33 16 22 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 23 C -0.02 -1.07 5.23 84.86 0.44 -0.63 16 24 N -0.95 -56.80 13.97 21.65 0.30 -56.50 16 25 Si 0.93 46.07 24.34 68.60 1.67 47.74 16 26 H -0.27 -12.19 6.62 99.48 0.66 -11.53 16 27 H -0.32 -16.37 7.11 99.48 0.71 -15.66 16 28 H -0.28 -14.01 6.64 99.48 0.66 -13.35 16 29 C 0.13 5.24 3.25 86.36 0.28 5.52 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 2.70 6.29 -2.39 -0.02 2.69 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.26 3.69 7.68 -2.91 -0.02 3.67 16 38 H 0.41 9.68 7.60 -92.71 -0.70 8.98 16 39 H 0.09 1.46 6.40 -2.39 -0.02 1.44 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.67 6.36 -2.39 -0.02 1.65 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 48 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.05 2.26 4.01 -2.39 -0.01 2.25 16 50 H 0.01 0.44 7.07 -2.39 -0.02 0.43 16 Total: -1.00 -70.84 390.17 4.55 -66.29 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.14 Total: 19.81 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 6.11 Total: 0.51 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -4.17 Total: -117.93 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.79 Total: -16.43 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.74 kcal Total: -70.84 4.55 -66.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025443744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.894 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds