Wall clock time and date at job start Tue Mar 31 2020 19:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47085 * 2 1 4 4 C 1.50698 * 109.47022 * 119.99479 * 2 1 3 5 5 N 1.30014 * 127.33630 * 299.96104 * 4 2 1 6 6 O 1.20659 * 112.30372 * 180.02562 * 5 4 2 7 7 C 1.33501 * 113.15320 * 359.71868 * 6 5 4 8 8 C 1.37353 * 106.34067 * 0.44743 * 7 6 5 9 9 C 1.47404 * 128.56222 * 179.85383 * 8 7 6 10 10 O 1.21614 * 119.99848 * 179.67906 * 9 8 7 11 11 N 1.34773 * 119.99957 * 359.68584 * 9 8 7 12 12 C 1.46498 * 119.99660 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47393 * 324.99521 * 12 11 9 14 14 C 1.52997 * 109.47495 * 84.99795 * 12 11 9 15 15 C 1.53005 * 109.46762 * 204.99515 * 12 11 9 16 16 H 1.08992 * 109.52393 * 300.07413 * 15 12 11 17 17 C 1.53046 * 109.49589 * 179.97438 * 15 12 11 18 18 C 1.53045 * 109.53628 * 178.68286 * 17 15 12 19 19 C 1.53188 * 109.31036 * 61.36865 * 18 17 15 20 20 N 1.46924 * 108.77926 * 305.36450 * 19 18 17 21 21 C 1.36931 * 120.63196 * 233.58995 * 20 19 18 22 22 H 1.08002 * 119.99989 * 152.79584 * 21 20 19 23 23 C 1.38813 * 120.00014 * 332.79609 * 21 20 19 24 24 N 1.31620 * 120.00218 * 159.75605 * 23 21 20 25 25 Si 1.86795 * 119.99965 * 339.75368 * 23 21 20 26 26 H 1.48505 * 109.47045 * 94.89373 * 25 23 21 27 27 H 1.48495 * 109.47297 * 214.89273 * 25 23 21 28 28 H 1.48504 * 109.47023 * 334.89518 * 25 23 21 29 29 C 1.46926 * 118.73802 * 53.60663 * 20 19 18 30 30 H 1.09007 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47729 * 300.00401 * 1 2 3 32 32 H 1.09006 * 109.46918 * 60.00704 * 1 2 3 33 33 H 1.08994 * 109.47729 * 239.99599 * 2 1 3 34 34 H 1.09002 * 109.47364 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46855 * 299.99965 * 3 2 1 36 36 H 1.08994 * 109.47164 * 59.99253 * 3 2 1 37 37 H 1.08003 * 126.82797 * 180.31625 * 7 6 5 38 38 H 0.96998 * 120.00026 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47496 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.46800 * 299.99273 * 14 12 11 41 41 H 1.08994 * 109.47480 * 59.99746 * 14 12 11 42 42 H 1.09000 * 109.46111 * 298.70633 * 17 15 12 43 43 H 1.08999 * 109.45569 * 58.68204 * 17 15 12 44 44 H 1.08997 * 109.49285 * 181.31787 * 18 17 15 45 45 H 1.09000 * 109.49725 * 301.38517 * 18 17 15 46 46 H 1.09002 * 109.58890 * 65.15277 * 19 18 17 47 47 H 1.08996 * 109.58456 * 185.57665 * 19 18 17 48 48 H 0.96997 * 120.00164 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.58737 * 186.61103 * 29 20 19 50 50 H 1.08999 * 109.58824 * 66.18283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.8084 -0.3923 2.4711 6 8 2.3445 -1.1501 3.2420 7 6 3.0251 -2.1238 2.6330 8 6 2.8809 -1.9107 1.2838 9 6 3.4346 -2.6950 0.1653 10 8 3.2013 -2.3662 -0.9821 11 7 4.1992 -3.7766 0.4142 12 6 4.7500 -4.5557 -0.6975 13 1 4.0364 -4.5677 -1.5215 14 6 6.0600 -3.9195 -1.1666 15 6 5.0167 -5.9889 -0.2329 16 1 5.7292 -5.9778 0.5919 17 6 5.5915 -6.8036 -1.3940 18 6 5.8894 -8.2284 -0.9214 19 6 4.5874 -8.8925 -0.4627 20 7 3.9538 -8.0402 0.5525 21 6 3.6016 -8.5524 1.7726 22 1 3.5578 -7.9066 2.6371 23 6 3.3009 -9.9018 1.8982 24 7 3.3536 -10.4806 3.0791 25 14 2.8215 -10.8961 0.3913 26 1 4.0231 -11.5758 -0.1561 27 1 1.8077 -11.9125 0.7709 28 1 2.2528 -9.9903 -0.6390 29 6 3.7048 -6.6277 0.2335 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 3.5806 -2.9196 3.1071 38 1 4.3855 -4.0387 1.3293 39 1 6.4700 -4.4995 -1.9934 40 1 5.8699 -2.8985 -1.4976 41 1 6.7735 -3.9075 -0.3427 42 1 4.8682 -6.8349 -2.2088 43 1 6.5126 -6.3373 -1.7438 44 1 6.3204 -8.8013 -1.7424 45 1 6.5943 -8.1963 -0.0906 46 1 3.9162 -9.0076 -1.3138 47 1 4.8073 -9.8700 -0.0335 48 1 3.1438 -11.4236 3.1668 49 1 3.3425 -6.1108 1.1221 50 1 2.9617 -6.5579 -0.5608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025443746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:51 Heat of formation + Delta-G solvation = 28.327148 kcal Electronic energy + Delta-G solvation = -29959.650111 eV Core-core repulsion = 25990.257829 eV Total energy + Delta-G solvation = -3969.392282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.08173 -39.95982 -38.21827 -36.49577 -35.43856 -33.44668 -32.70035 -31.86088 -31.15242 -30.68142 -29.00226 -27.38719 -25.56990 -25.00224 -23.82032 -23.60438 -22.00394 -21.09178 -20.73175 -20.02183 -19.52605 -18.25106 -17.83461 -16.87930 -16.61215 -16.12298 -15.46764 -15.10089 -14.98923 -14.80608 -14.33202 -14.14754 -13.94448 -13.72722 -13.51661 -13.43589 -13.26534 -13.02013 -12.74542 -12.44975 -12.41418 -12.16483 -11.94681 -11.76342 -11.56155 -11.53979 -11.42447 -11.36588 -11.02971 -10.85113 -10.61864 -10.45678 -10.19797 -10.11656 -10.08832 -9.93282 -9.86051 -9.69373 -9.47760 -9.12007 -8.65199 -7.02281 -5.99845 -3.35912 0.88978 1.63459 2.71868 3.10719 3.13572 3.28985 3.46034 3.48594 3.81536 4.04320 4.48948 4.61379 4.66004 4.77484 4.89950 4.91329 4.98091 5.07287 5.09667 5.18391 5.27163 5.33740 5.40063 5.40161 5.52232 5.54066 5.57099 5.59091 5.70204 5.80866 5.82239 5.84892 5.93882 5.98984 6.01740 6.05900 6.16048 6.20495 6.26444 6.34709 6.39645 6.52809 6.55252 6.65722 6.67222 6.92343 7.39431 7.90192 8.01806 8.09518 8.26465 8.88433 9.67156 10.05115 11.15981 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.003009 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.894235 B = 9304.692282 C =10226.481088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 C -0.141 4.141 4 C 0.078 3.922 5 N -0.356 5.356 6 O 0.097 5.903 7 C -0.003 4.003 8 C -0.253 4.253 9 C 0.597 3.403 10 O -0.532 6.532 11 N -0.712 5.712 12 C 0.150 3.850 13 H 0.089 0.911 14 C -0.162 4.162 15 C -0.113 4.113 16 H 0.077 0.923 17 C -0.102 4.102 18 C -0.134 4.134 19 C 0.124 3.876 20 N -0.605 5.605 21 C -0.261 4.261 22 H 0.085 0.915 23 C 0.024 3.976 24 N -0.909 5.909 25 Si 0.883 3.117 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.158 3.842 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.227 0.773 38 H 0.400 0.600 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.263 0.737 49 H 0.059 0.941 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 18.972 -5.946 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 C -0.199 4.199 4 C -0.086 4.086 5 N -0.062 5.062 6 O 0.038 5.962 7 C -0.085 4.085 8 C -0.260 4.260 9 C 0.384 3.616 10 O -0.410 6.410 11 N -0.362 5.362 12 C 0.045 3.955 13 H 0.107 0.893 14 C -0.220 4.220 15 C -0.134 4.134 16 H 0.096 0.904 17 C -0.140 4.140 18 C -0.174 4.174 19 C -0.002 4.002 20 N -0.329 5.329 21 C -0.389 4.389 22 H 0.102 0.898 23 C -0.175 4.175 24 N -0.551 5.551 25 Si 0.714 3.286 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.195 1.195 29 C 0.031 3.969 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.235 0.765 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.818 20.001 -6.017 20.965 hybrid contribution 0.271 -1.575 -0.680 1.737 sum 2.089 18.426 -6.697 19.716 Atomic orbital electron populations 1.21816 0.93436 1.02432 1.02367 1.19811 0.96251 0.95635 0.92793 1.21809 1.01247 0.94474 1.02389 1.24814 0.96285 0.93668 0.93783 1.73621 1.16713 1.14041 1.01873 1.84594 1.48419 1.29342 1.33875 1.26500 0.95922 0.93999 0.92098 1.22390 1.08293 1.01224 0.94125 1.16800 0.77923 0.79914 0.87010 1.90757 1.59785 1.69015 1.21443 1.45930 1.51449 1.28109 1.10751 1.21076 0.95324 0.90018 0.89039 0.89279 1.22210 0.97084 1.01108 1.01633 1.21985 1.00746 0.91669 0.99005 0.90448 1.21452 0.99932 0.95727 0.96919 1.22001 0.99579 0.95588 1.00183 1.21351 0.91907 0.95005 0.91914 1.44328 1.68789 1.05462 1.14287 1.18879 1.41483 0.93804 0.84751 0.89777 1.25259 0.99255 0.96927 0.96072 1.69823 1.51056 1.11376 1.22890 0.86942 0.77887 0.79697 0.84094 1.21688 1.23209 1.19485 1.20888 0.92444 0.85397 0.98123 0.92325 0.92273 0.91555 0.86902 0.92533 0.91562 0.92288 0.75649 0.76511 0.91158 0.92479 0.92510 0.92381 0.92405 0.92708 0.91726 0.95723 0.91140 0.92749 0.92227 0.96015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.17 37.16 0.34 -1.05 16 2 C -0.03 -0.28 3.33 -91.77 -0.31 -0.59 16 3 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 4 C 0.08 0.94 6.09 -79.77 -0.49 0.46 16 5 N -0.36 -4.38 12.01 34.78 0.42 -3.96 16 6 O 0.10 1.05 11.06 18.63 0.21 1.25 16 7 C 0.00 -0.02 11.85 30.41 0.36 0.34 16 8 C -0.25 -2.93 6.47 -102.89 -0.67 -3.60 16 9 C 0.60 7.72 7.78 -12.53 -0.10 7.62 16 10 O -0.53 -8.34 14.92 5.27 0.08 -8.26 16 11 N -0.71 -8.08 4.47 -54.89 -0.25 -8.33 16 12 C 0.15 1.84 2.16 -67.93 -0.15 1.69 16 13 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 14 C -0.16 -1.74 9.13 37.16 0.34 -1.40 16 15 C -0.11 -1.60 1.97 -90.49 -0.18 -1.78 16 16 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.10 -1.42 4.85 -26.68 -0.13 -1.55 16 18 C -0.13 -2.20 6.08 -26.61 -0.16 -2.37 16 19 C 0.12 2.59 4.19 -3.71 -0.02 2.57 16 20 N -0.61 -13.62 2.77 -172.32 -0.48 -14.10 16 21 C -0.26 -6.98 10.04 -15.06 -0.15 -7.13 16 22 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 23 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 24 N -0.91 -27.23 13.97 55.49 0.78 -26.45 16 25 Si 0.88 22.08 24.35 -169.99 -4.14 17.94 16 26 H -0.29 -6.98 6.70 56.52 0.38 -6.60 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 28 H -0.27 -6.66 6.45 56.52 0.36 -6.29 16 29 C 0.16 2.86 5.56 -3.71 -0.02 2.83 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 1.38 6.29 -51.93 -0.33 1.05 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.23 1.09 7.68 -52.48 -0.40 0.69 16 38 H 0.40 3.75 7.61 -40.82 -0.31 3.44 16 39 H 0.07 0.70 6.40 -51.92 -0.33 0.37 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.52 6.98 -51.93 -0.36 0.16 16 47 H 0.07 1.63 4.50 -51.93 -0.23 1.40 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.06 1.05 7.45 -51.93 -0.39 0.66 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 389.97 15.07 5.88 5.88 Total: -1.00 -32.50 389.97 -6.77 -39.27 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.19 Total: 1.07 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.07 Total: -4.32 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.47 Total: -52.83 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.28 Total: -7.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.50 -6.77 -39.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025443746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.596 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds