Wall clock time and date at job start Tue Mar 31 2020 19:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47085 * 2 1 4 4 C 1.50698 * 109.47022 * 119.99479 * 2 1 3 5 5 N 1.30014 * 127.33630 * 299.96104 * 4 2 1 6 6 O 1.20659 * 112.30372 * 180.02562 * 5 4 2 7 7 C 1.33501 * 113.15320 * 359.71868 * 6 5 4 8 8 C 1.37353 * 106.34067 * 0.44743 * 7 6 5 9 9 C 1.47404 * 128.56222 * 179.85383 * 8 7 6 10 10 O 1.21614 * 119.99848 * 179.67906 * 9 8 7 11 11 N 1.34773 * 119.99957 * 359.68584 * 9 8 7 12 12 C 1.46498 * 119.99660 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47393 * 324.99521 * 12 11 9 14 14 C 1.52997 * 109.47495 * 84.99795 * 12 11 9 15 15 C 1.53005 * 109.46762 * 204.99515 * 12 11 9 16 16 H 1.08992 * 109.52393 * 300.07413 * 15 12 11 17 17 C 1.53046 * 109.49589 * 179.97438 * 15 12 11 18 18 C 1.53045 * 109.53628 * 178.68286 * 17 15 12 19 19 C 1.53188 * 109.31036 * 61.36865 * 18 17 15 20 20 N 1.46924 * 108.77926 * 305.36450 * 19 18 17 21 21 C 1.36931 * 120.63196 * 233.58995 * 20 19 18 22 22 H 1.08002 * 119.99989 * 152.79584 * 21 20 19 23 23 C 1.38813 * 120.00014 * 332.79609 * 21 20 19 24 24 N 1.31620 * 120.00218 * 159.75605 * 23 21 20 25 25 Si 1.86795 * 119.99965 * 339.75368 * 23 21 20 26 26 H 1.48505 * 109.47045 * 94.89373 * 25 23 21 27 27 H 1.48495 * 109.47297 * 214.89273 * 25 23 21 28 28 H 1.48504 * 109.47023 * 334.89518 * 25 23 21 29 29 C 1.46926 * 118.73802 * 53.60663 * 20 19 18 30 30 H 1.09007 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47729 * 300.00401 * 1 2 3 32 32 H 1.09006 * 109.46918 * 60.00704 * 1 2 3 33 33 H 1.08994 * 109.47729 * 239.99599 * 2 1 3 34 34 H 1.09002 * 109.47364 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46855 * 299.99965 * 3 2 1 36 36 H 1.08994 * 109.47164 * 59.99253 * 3 2 1 37 37 H 1.08003 * 126.82797 * 180.31625 * 7 6 5 38 38 H 0.96998 * 120.00026 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47496 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.46800 * 299.99273 * 14 12 11 41 41 H 1.08994 * 109.47480 * 59.99746 * 14 12 11 42 42 H 1.09000 * 109.46111 * 298.70633 * 17 15 12 43 43 H 1.08999 * 109.45569 * 58.68204 * 17 15 12 44 44 H 1.08997 * 109.49285 * 181.31787 * 18 17 15 45 45 H 1.09000 * 109.49725 * 301.38517 * 18 17 15 46 46 H 1.09002 * 109.58890 * 65.15277 * 19 18 17 47 47 H 1.08996 * 109.58456 * 185.57665 * 19 18 17 48 48 H 0.96997 * 120.00164 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.58737 * 186.61103 * 29 20 19 50 50 H 1.08999 * 109.58824 * 66.18283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.8084 -0.3923 2.4711 6 8 2.3445 -1.1501 3.2420 7 6 3.0251 -2.1238 2.6330 8 6 2.8809 -1.9107 1.2838 9 6 3.4346 -2.6950 0.1653 10 8 3.2013 -2.3662 -0.9821 11 7 4.1992 -3.7766 0.4142 12 6 4.7500 -4.5557 -0.6975 13 1 4.0364 -4.5677 -1.5215 14 6 6.0600 -3.9195 -1.1666 15 6 5.0167 -5.9889 -0.2329 16 1 5.7292 -5.9778 0.5919 17 6 5.5915 -6.8036 -1.3940 18 6 5.8894 -8.2284 -0.9214 19 6 4.5874 -8.8925 -0.4627 20 7 3.9538 -8.0402 0.5525 21 6 3.6016 -8.5524 1.7726 22 1 3.5578 -7.9066 2.6371 23 6 3.3009 -9.9018 1.8982 24 7 3.3536 -10.4806 3.0791 25 14 2.8215 -10.8961 0.3913 26 1 4.0231 -11.5758 -0.1561 27 1 1.8077 -11.9125 0.7709 28 1 2.2528 -9.9903 -0.6390 29 6 3.7048 -6.6277 0.2335 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 3.5806 -2.9196 3.1071 38 1 4.3855 -4.0387 1.3293 39 1 6.4700 -4.4995 -1.9934 40 1 5.8699 -2.8985 -1.4976 41 1 6.7735 -3.9075 -0.3427 42 1 4.8682 -6.8349 -2.2088 43 1 6.5126 -6.3373 -1.7438 44 1 6.3204 -8.8013 -1.7424 45 1 6.5943 -8.1963 -0.0906 46 1 3.9162 -9.0076 -1.3138 47 1 4.8073 -9.8700 -0.0335 48 1 3.1438 -11.4236 3.1668 49 1 3.3425 -6.1108 1.1221 50 1 2.9617 -6.5579 -0.5608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025443746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:50 Heat of formation + Delta-G solvation = 7.625574 kcal Electronic energy + Delta-G solvation = -29960.547798 eV Core-core repulsion = 25990.257829 eV Total energy + Delta-G solvation = -3970.289970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.95526 -41.01761 -39.54483 -37.37936 -36.69945 -34.81412 -33.91095 -32.90292 -32.64821 -31.96109 -30.19003 -28.14329 -27.08782 -26.21943 -24.87267 -24.63221 -23.49344 -22.39470 -21.70006 -20.92198 -20.78186 -19.20598 -18.71858 -18.68481 -17.61744 -17.26790 -17.14185 -16.18397 -15.88733 -15.76679 -15.70887 -15.52117 -15.18875 -15.01498 -14.80477 -14.36026 -14.29336 -14.17936 -14.14275 -13.86920 -13.58799 -13.25724 -13.17796 -12.82756 -12.79340 -12.60252 -12.50426 -12.33675 -12.32879 -12.15937 -11.89381 -11.89268 -11.62396 -11.50568 -11.30873 -11.23989 -10.99202 -10.98025 -10.79386 -10.66828 -10.08479 -8.90456 -8.15574 -5.45963 0.07207 0.74038 1.28669 1.41060 1.48548 1.87253 2.15501 2.28388 2.41719 2.97092 3.07063 3.22666 3.31321 3.76692 3.81629 3.91728 3.99077 4.04839 4.10665 4.10926 4.17415 4.23846 4.37352 4.45906 4.54885 4.56642 4.66113 4.68591 4.72375 4.74339 4.80530 4.83961 4.89474 4.91417 5.00940 5.01961 5.06386 5.11338 5.18708 5.21678 5.22303 5.28762 5.34374 5.44754 5.50962 5.62357 5.88200 6.13981 6.47295 6.93420 7.12992 7.19770 7.64411 8.05644 9.03998 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.003009 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.894235 B = 9304.692282 C =10226.481088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.135 4.135 4 C 0.065 3.935 5 N -0.373 5.373 6 O 0.094 5.906 7 C 0.026 3.974 8 C -0.281 4.281 9 C 0.599 3.401 10 O -0.565 6.565 11 N -0.705 5.705 12 C 0.158 3.842 13 H 0.073 0.927 14 C -0.154 4.154 15 C -0.098 4.098 16 H 0.081 0.919 17 C -0.100 4.100 18 C -0.126 4.126 19 C 0.114 3.886 20 N -0.619 5.619 21 C -0.241 4.241 22 H 0.061 0.939 23 C -0.034 4.034 24 N -0.956 5.956 25 Si 0.940 3.060 26 H -0.277 1.277 27 H -0.315 1.315 28 H -0.265 1.265 29 C 0.154 3.846 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.268 0.732 38 H 0.411 0.589 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.026 0.974 47 H 0.045 0.955 48 H 0.260 0.740 49 H 0.059 0.941 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 20.048 -7.313 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.048 4.048 3 C -0.193 4.193 4 C -0.098 4.098 5 N -0.080 5.080 6 O 0.036 5.964 7 C -0.056 4.056 8 C -0.288 4.288 9 C 0.386 3.614 10 O -0.445 6.445 11 N -0.356 5.356 12 C 0.053 3.947 13 H 0.091 0.909 14 C -0.213 4.213 15 C -0.118 4.118 16 H 0.099 0.901 17 C -0.138 4.138 18 C -0.165 4.165 19 C -0.010 4.010 20 N -0.343 5.343 21 C -0.371 4.371 22 H 0.079 0.921 23 C -0.229 4.229 24 N -0.603 5.603 25 Si 0.770 3.230 26 H -0.204 1.204 27 H -0.245 1.245 28 H -0.190 1.190 29 C 0.029 3.971 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.283 0.717 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 3.265 21.102 -7.406 22.601 hybrid contribution -0.172 -1.852 -0.212 1.872 sum 3.094 19.250 -7.618 20.933 Atomic orbital electron populations 1.21785 0.92754 1.01842 1.03197 1.19845 0.96835 0.96338 0.91798 1.21766 1.00876 0.93487 1.03158 1.25115 0.96424 0.94082 0.94153 1.73619 1.17602 1.14875 1.01952 1.84571 1.48424 1.29582 1.33775 1.27194 0.93901 0.93318 0.91185 1.22351 1.09810 1.01798 0.94888 1.16922 0.77595 0.79990 0.86846 1.90739 1.61047 1.69964 1.22765 1.45851 1.50935 1.27522 1.11246 1.20932 0.95998 0.89084 0.88682 0.90867 1.22143 0.96075 1.00567 1.02467 1.21779 0.98228 0.92378 0.99408 0.90069 1.21483 1.01613 0.94169 0.96543 1.21907 0.96674 0.97094 1.00859 1.21432 0.94211 0.94243 0.91143 1.44484 1.69232 1.07278 1.13308 1.18907 1.39029 0.93281 0.85896 0.92111 1.25824 1.00566 0.98321 0.98177 1.69938 1.53847 1.11580 1.24893 0.86010 0.77507 0.78218 0.81233 1.20369 1.24465 1.19003 1.21055 0.94717 0.83288 0.98056 0.93584 0.92373 0.89749 0.88452 0.93028 0.89828 0.92422 0.71666 0.75249 0.89818 0.93322 0.91285 0.92136 0.88983 0.90163 0.92252 0.95652 0.93688 0.93110 0.92283 0.96595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.17 71.98 0.66 -2.00 16 2 C -0.03 -0.63 3.33 -11.54 -0.04 -0.66 16 3 C -0.14 -2.39 9.18 71.98 0.66 -1.73 16 4 C 0.07 1.56 6.09 45.16 0.28 1.84 16 5 N -0.37 -8.95 12.01 -44.78 -0.54 -9.48 16 6 O 0.09 1.91 11.06 76.92 0.85 2.76 16 7 C 0.03 0.42 11.85 67.61 0.80 1.22 16 8 C -0.28 -6.24 6.47 -18.74 -0.12 -6.36 16 9 C 0.60 14.90 7.78 86.66 0.67 15.58 16 10 O -0.56 -17.56 14.92 -4.08 -0.06 -17.62 16 11 N -0.70 -14.63 4.47 -445.82 -1.99 -16.62 16 12 C 0.16 3.48 2.16 44.99 0.10 3.58 16 13 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 14 C -0.15 -2.79 9.13 71.98 0.66 -2.13 16 15 C -0.10 -2.48 1.97 -10.71 -0.02 -2.50 16 16 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 17 C -0.10 -2.40 4.85 30.62 0.15 -2.25 16 18 C -0.13 -3.74 6.08 30.67 0.19 -3.56 16 19 C 0.11 4.60 4.19 86.36 0.36 4.96 16 20 N -0.62 -27.24 2.77 -699.11 -1.94 -29.18 16 21 C -0.24 -12.99 10.04 84.03 0.84 -12.15 16 22 H 0.06 3.49 8.05 -2.91 -0.02 3.47 16 23 C -0.03 -1.95 5.24 84.86 0.44 -1.50 16 24 N -0.96 -58.71 13.97 21.65 0.30 -58.41 16 25 Si 0.94 46.17 24.35 68.60 1.67 47.84 16 26 H -0.28 -12.87 6.70 99.48 0.67 -12.20 16 27 H -0.32 -15.92 7.11 99.48 0.71 -15.22 16 28 H -0.27 -12.62 6.45 99.48 0.64 -11.97 16 29 C 0.15 5.34 5.56 86.36 0.48 5.82 16 30 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.26 16 33 H 0.10 2.43 6.29 -2.39 -0.02 2.41 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.27 1.66 7.68 -2.91 -0.02 1.64 16 38 H 0.41 6.66 7.61 -92.71 -0.71 5.96 16 39 H 0.08 1.30 6.40 -2.38 -0.02 1.28 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.66 6.36 -2.39 -0.02 1.65 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.03 1.02 6.98 -2.39 -0.02 1.00 16 47 H 0.04 2.03 4.50 -2.39 -0.01 2.02 16 48 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.06 2.01 7.45 -2.39 -0.02 2.00 16 50 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -72.37 389.97 4.53 -67.84 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.13 Total: 14.74 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 6.11 Total: -1.86 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -4.17 Total: -113.69 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.79 Total: -14.86 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.67 Total: 47.84 kcal Total: -72.37 4.53 -67.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025443746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.465 kcal (2) G-P(sol) polarization free energy of solvation -72.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds