Wall clock time and date at job start Tue Mar 31 2020 19:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47266 * 2 1 4 4 C 1.50695 * 109.47259 * 120.00228 * 2 1 3 5 5 C 1.35313 * 126.66702 * 120.32099 * 4 2 1 6 6 C 1.42271 * 103.92360 * 180.08534 * 5 4 2 7 7 C 1.48330 * 126.93818 * 179.89070 * 6 5 4 8 8 O 1.21489 * 120.00249 * 359.69967 * 7 6 5 9 9 N 1.34777 * 119.99812 * 179.70528 * 7 6 5 10 10 C 1.46503 * 120.00303 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46812 * 34.99756 * 10 9 7 12 12 C 1.53002 * 109.47108 * 275.00146 * 10 9 7 13 13 C 1.52994 * 109.47461 * 154.99631 * 10 9 7 14 14 H 1.08997 * 109.50040 * 305.06373 * 13 10 9 15 15 C 1.53039 * 109.49852 * 185.00035 * 13 10 9 16 16 C 1.53039 * 109.54019 * 178.68410 * 15 13 10 17 17 C 1.53191 * 109.31370 * 61.36811 * 16 15 13 18 18 N 1.46933 * 108.77443 * 305.36677 * 17 16 15 19 19 C 1.36933 * 120.63187 * 233.59063 * 18 17 16 20 20 H 1.08000 * 120.00528 * 151.84397 * 19 18 17 21 21 C 1.38819 * 119.99740 * 331.83729 * 19 18 17 22 22 N 1.31616 * 119.99988 * 343.07710 * 21 19 18 23 23 Si 1.86799 * 119.99793 * 163.07744 * 21 19 18 24 24 H 1.48501 * 109.47364 * 60.00336 * 23 21 19 25 25 H 1.48506 * 109.46891 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47172 * 299.99817 * 23 21 19 27 27 C 1.46927 * 118.73678 * 53.60362 * 18 17 16 28 28 N 1.30985 * 106.12477 * 359.62045 * 6 5 4 29 29 O 1.20912 * 111.43720 * 0.24447 * 28 6 5 30 30 H 1.09001 * 109.46526 * 299.99824 * 1 2 3 31 31 H 1.09000 * 109.47111 * 59.99534 * 1 2 3 32 32 H 1.08991 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46526 * 240.00176 * 2 1 3 34 34 H 1.09000 * 109.47436 * 300.00267 * 3 2 1 35 35 H 1.09009 * 109.47179 * 59.99970 * 3 2 1 36 36 H 1.09000 * 109.47514 * 180.02562 * 3 2 1 37 37 H 1.08003 * 128.03777 * 359.94341 * 5 4 2 38 38 H 0.97004 * 120.00264 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.47353 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46966 * 299.99516 * 12 10 9 41 41 H 1.08999 * 109.46921 * 59.99288 * 12 10 9 42 42 H 1.09001 * 109.46122 * 298.70628 * 15 13 10 43 43 H 1.08999 * 109.46385 * 58.66265 * 15 13 10 44 44 H 1.08999 * 109.49670 * 181.31498 * 16 15 13 45 45 H 1.08998 * 109.49558 * 301.41629 * 16 15 13 46 46 H 1.08994 * 109.59411 * 185.57934 * 17 16 15 47 47 H 1.09005 * 109.58628 * 65.14664 * 17 16 15 48 48 H 0.96999 * 120.00068 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.58491 * 186.60854 * 27 18 17 50 50 H 1.08999 * 109.58504 * 66.18432 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8184 -1.8114 1.2635 6 6 2.9923 -2.0663 2.6523 7 6 3.7730 -3.1685 3.2654 8 8 4.3436 -3.9750 2.5585 9 7 3.8492 -3.2752 4.6068 10 6 4.6197 -4.3641 5.2124 11 1 5.4927 -4.5780 4.5958 12 6 3.7448 -5.6155 5.3093 13 6 5.0741 -3.9496 6.6133 14 1 5.6218 -3.0091 6.5548 15 6 5.9823 -5.0340 7.1975 16 6 6.4637 -4.6055 8.5855 17 6 5.2550 -4.4370 9.5114 18 7 4.3072 -3.5040 8.8867 19 6 3.8589 -2.4043 9.5683 20 1 3.5610 -1.5181 9.0276 21 6 3.7870 -2.4285 10.9544 22 7 3.8221 -3.5776 11.5952 23 14 3.6406 -0.8302 11.9101 24 1 2.4032 -0.1193 11.4992 25 1 3.5821 -1.1265 13.3641 26 1 4.8205 0.0258 11.6269 27 6 3.8495 -3.7737 7.5168 28 7 2.3287 -1.1277 3.2803 29 8 1.7928 -0.3708 2.5045 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1301 1.4425 -0.0005 37 1 3.2186 -2.3687 0.4293 38 1 3.3938 -2.6310 5.1713 39 1 4.3182 -6.4258 5.7595 40 1 2.8718 -5.4016 5.9259 41 1 3.4212 -5.9107 4.3113 42 1 5.4268 -5.9684 7.2782 43 1 6.8423 -5.1786 6.5435 44 1 7.1291 -5.3676 8.9911 45 1 6.9981 -3.6586 8.5089 46 1 5.5825 -4.0371 10.4710 47 1 4.7720 -5.4027 9.6611 48 1 3.7716 -3.5946 12.5637 49 1 3.2498 -2.9362 7.1604 50 1 3.2520 -4.6853 7.5040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025497178.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:02 Heat of formation + Delta-G solvation = 26.978046 kcal Electronic energy + Delta-G solvation = -29420.462930 eV Core-core repulsion = 25451.012146 eV Total energy + Delta-G solvation = -3969.450784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.28165 -39.91588 -38.04455 -36.50098 -35.25504 -34.16398 -33.01566 -31.31465 -30.64741 -30.45116 -28.12575 -27.64751 -25.50134 -25.30036 -23.70961 -23.38529 -22.40245 -21.98900 -20.45132 -19.80573 -18.61296 -17.95166 -17.55467 -17.03785 -16.58965 -15.92583 -15.48579 -14.98677 -14.92198 -14.70763 -14.36737 -14.05379 -13.85016 -13.77038 -13.70645 -13.45836 -13.09833 -12.66512 -12.57252 -12.39281 -12.29051 -12.07448 -11.85110 -11.81784 -11.75822 -11.65580 -11.31652 -10.99394 -10.91996 -10.63954 -10.57738 -10.49408 -10.32807 -10.19835 -10.06284 -9.86674 -9.71488 -9.62275 -9.40420 -9.02082 -8.45608 -6.65894 -5.78813 -3.21515 0.96826 1.46323 2.67149 2.95793 3.11274 3.38616 3.44129 3.45682 3.81839 4.09871 4.40847 4.48709 4.56125 4.71102 4.83563 4.97935 5.08159 5.15521 5.16695 5.20533 5.34947 5.38649 5.39592 5.40693 5.48701 5.56300 5.64580 5.67224 5.69765 5.74911 5.78524 5.83873 5.98813 6.10209 6.21215 6.23629 6.31983 6.46722 6.56357 6.59816 6.70135 6.77405 6.86261 6.97487 7.39732 7.42395 7.67271 7.79290 7.84622 8.08290 8.44998 9.21308 9.84510 10.41337 11.29484 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.002777 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.508208 B =10080.410270 C =11832.591912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.011 4.011 3 C -0.152 4.152 4 C -0.030 4.030 5 C -0.182 4.182 6 C -0.025 4.025 7 C 0.598 3.402 8 O -0.530 6.530 9 N -0.702 5.702 10 C 0.149 3.851 11 H 0.085 0.915 12 C -0.166 4.166 13 C -0.113 4.113 14 H 0.073 0.927 15 C -0.100 4.100 16 C -0.142 4.142 17 C 0.170 3.830 18 N -0.590 5.590 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.150 3.850 28 N -0.327 5.327 29 O 0.127 5.873 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.179 0.821 38 H 0.409 0.591 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.047 0.953 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 4.229 -23.276 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 C -0.210 4.210 4 C -0.093 4.093 5 C -0.204 4.204 6 C -0.184 4.184 7 C 0.381 3.619 8 O -0.405 6.405 9 N -0.353 5.353 10 C 0.045 3.955 11 H 0.103 0.897 12 C -0.224 4.224 13 C -0.134 4.134 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.024 3.976 28 N -0.027 5.027 29 O 0.050 5.950 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.197 0.803 38 H 0.245 0.755 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.640 3.833 -22.215 22.697 hybrid contribution -0.024 0.729 0.159 0.747 sum -2.664 4.562 -22.056 22.680 Atomic orbital electron populations 1.21908 0.92968 1.02884 1.03179 1.19816 0.96866 0.96175 0.90180 1.21910 1.01754 0.94104 1.03183 1.24503 1.00183 0.97305 0.87303 1.22419 1.02711 0.98740 0.96560 1.23573 1.03240 0.98699 0.92874 1.16877 0.79838 0.82558 0.82627 1.90773 1.46014 1.41876 1.61829 1.46110 1.52203 1.31416 1.05621 1.21152 0.94031 0.85893 0.94439 0.89694 1.22270 1.00918 0.97366 1.01812 1.21968 0.99649 0.99567 0.92244 0.90898 1.21418 0.97748 0.97642 0.96977 1.22182 1.00127 0.99896 0.95963 1.20794 0.86868 0.92488 0.95444 1.44009 1.48907 1.27543 1.10792 1.19130 1.39396 0.90871 0.89001 0.91832 1.25033 1.00577 0.96514 0.97390 1.70024 1.53772 1.23291 1.07535 0.86380 0.78158 0.83381 0.78919 1.20851 1.21629 1.21046 1.21002 0.92279 0.98098 0.86240 1.74256 1.09181 1.02488 1.16726 1.84780 1.54161 1.42493 1.13530 0.91575 0.91180 0.91976 0.87737 0.91181 0.91568 0.91979 0.80322 0.75462 0.91076 0.91430 0.92822 0.92165 0.93479 0.93162 0.92799 0.89584 0.96422 0.93586 0.93465 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.18 37.16 0.34 -0.40 16 2 C -0.01 -0.06 3.34 -91.77 -0.31 -0.37 16 3 C -0.15 -0.75 9.17 37.16 0.34 -0.41 16 4 C -0.03 -0.27 5.98 -35.35 -0.21 -0.48 16 5 C -0.18 -1.95 10.91 -39.08 -0.43 -2.38 16 6 C -0.02 -0.34 7.19 -82.53 -0.59 -0.93 16 7 C 0.60 9.23 7.81 -12.11 -0.09 9.14 16 8 O -0.53 -9.21 16.61 5.38 0.09 -9.12 16 9 N -0.70 -10.60 5.01 -54.60 -0.27 -10.88 16 10 C 0.15 2.26 2.35 -67.93 -0.16 2.10 16 11 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 12 C -0.17 -2.39 8.76 37.16 0.33 -2.06 16 13 C -0.11 -1.94 2.27 -90.50 -0.21 -2.14 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.10 -1.66 4.89 -26.69 -0.13 -1.79 16 16 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 17 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 18 N -0.59 -14.64 2.99 -172.31 -0.52 -15.16 16 19 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 20 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 23 Si 0.90 21.78 29.59 -169.99 -5.03 16.76 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 C 0.15 3.07 5.26 -3.71 -0.02 3.05 16 28 N -0.33 -4.49 11.84 33.29 0.39 -4.10 16 29 O 0.13 1.46 11.18 17.23 0.19 1.65 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.41 8.12 -51.93 -0.42 -0.02 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.41 6.20 7.04 -40.82 -0.29 5.91 16 39 H 0.07 0.96 6.60 -51.93 -0.34 0.62 16 40 H 0.07 1.02 6.23 -51.93 -0.32 0.69 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.98 6.63 -51.93 -0.34 0.63 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.05 0.95 6.75 -51.93 -0.35 0.60 16 50 H 0.03 0.54 6.06 -51.93 -0.31 0.23 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -31.45 395.76 -8.25 -39.70 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.14 Total: 3.37 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.55 Total: -2.64 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.23 Total: -55.68 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.45 -8.25 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025497178.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.678 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds