Wall clock time and date at job start Tue Mar 31 2020 19:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47266 * 2 1 4 4 C 1.50695 * 109.47259 * 120.00228 * 2 1 3 5 5 C 1.35313 * 126.66702 * 120.32099 * 4 2 1 6 6 C 1.42271 * 103.92360 * 180.08534 * 5 4 2 7 7 C 1.48330 * 126.93818 * 179.89070 * 6 5 4 8 8 O 1.21489 * 120.00249 * 359.69967 * 7 6 5 9 9 N 1.34777 * 119.99812 * 179.70528 * 7 6 5 10 10 C 1.46503 * 120.00303 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46812 * 34.99756 * 10 9 7 12 12 C 1.53002 * 109.47108 * 275.00146 * 10 9 7 13 13 C 1.52994 * 109.47461 * 154.99631 * 10 9 7 14 14 H 1.08997 * 109.50040 * 305.06373 * 13 10 9 15 15 C 1.53039 * 109.49852 * 185.00035 * 13 10 9 16 16 C 1.53039 * 109.54019 * 178.68410 * 15 13 10 17 17 C 1.53191 * 109.31370 * 61.36811 * 16 15 13 18 18 N 1.46933 * 108.77443 * 305.36677 * 17 16 15 19 19 C 1.36933 * 120.63187 * 233.59063 * 18 17 16 20 20 H 1.08000 * 120.00528 * 151.84397 * 19 18 17 21 21 C 1.38819 * 119.99740 * 331.83729 * 19 18 17 22 22 N 1.31616 * 119.99988 * 343.07710 * 21 19 18 23 23 Si 1.86799 * 119.99793 * 163.07744 * 21 19 18 24 24 H 1.48501 * 109.47364 * 60.00336 * 23 21 19 25 25 H 1.48506 * 109.46891 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47172 * 299.99817 * 23 21 19 27 27 C 1.46927 * 118.73678 * 53.60362 * 18 17 16 28 28 N 1.30985 * 106.12477 * 359.62045 * 6 5 4 29 29 O 1.20912 * 111.43720 * 0.24447 * 28 6 5 30 30 H 1.09001 * 109.46526 * 299.99824 * 1 2 3 31 31 H 1.09000 * 109.47111 * 59.99534 * 1 2 3 32 32 H 1.08991 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46526 * 240.00176 * 2 1 3 34 34 H 1.09000 * 109.47436 * 300.00267 * 3 2 1 35 35 H 1.09009 * 109.47179 * 59.99970 * 3 2 1 36 36 H 1.09000 * 109.47514 * 180.02562 * 3 2 1 37 37 H 1.08003 * 128.03777 * 359.94341 * 5 4 2 38 38 H 0.97004 * 120.00264 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.47353 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46966 * 299.99516 * 12 10 9 41 41 H 1.08999 * 109.46921 * 59.99288 * 12 10 9 42 42 H 1.09001 * 109.46122 * 298.70628 * 15 13 10 43 43 H 1.08999 * 109.46385 * 58.66265 * 15 13 10 44 44 H 1.08999 * 109.49670 * 181.31498 * 16 15 13 45 45 H 1.08998 * 109.49558 * 301.41629 * 16 15 13 46 46 H 1.08994 * 109.59411 * 185.57934 * 17 16 15 47 47 H 1.09005 * 109.58628 * 65.14664 * 17 16 15 48 48 H 0.96999 * 120.00068 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.58491 * 186.60854 * 27 18 17 50 50 H 1.08999 * 109.58504 * 66.18432 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8184 -1.8114 1.2635 6 6 2.9923 -2.0663 2.6523 7 6 3.7730 -3.1685 3.2654 8 8 4.3436 -3.9750 2.5585 9 7 3.8492 -3.2752 4.6068 10 6 4.6197 -4.3641 5.2124 11 1 5.4927 -4.5780 4.5958 12 6 3.7448 -5.6155 5.3093 13 6 5.0741 -3.9496 6.6133 14 1 5.6218 -3.0091 6.5548 15 6 5.9823 -5.0340 7.1975 16 6 6.4637 -4.6055 8.5855 17 6 5.2550 -4.4370 9.5114 18 7 4.3072 -3.5040 8.8867 19 6 3.8589 -2.4043 9.5683 20 1 3.5610 -1.5181 9.0276 21 6 3.7870 -2.4285 10.9544 22 7 3.8221 -3.5776 11.5952 23 14 3.6406 -0.8302 11.9101 24 1 2.4032 -0.1193 11.4992 25 1 3.5821 -1.1265 13.3641 26 1 4.8205 0.0258 11.6269 27 6 3.8495 -3.7737 7.5168 28 7 2.3287 -1.1277 3.2803 29 8 1.7928 -0.3708 2.5045 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1301 1.4425 -0.0005 37 1 3.2186 -2.3687 0.4293 38 1 3.3938 -2.6310 5.1713 39 1 4.3182 -6.4258 5.7595 40 1 2.8718 -5.4016 5.9259 41 1 3.4212 -5.9107 4.3113 42 1 5.4268 -5.9684 7.2782 43 1 6.8423 -5.1786 6.5435 44 1 7.1291 -5.3676 8.9911 45 1 6.9981 -3.6586 8.5089 46 1 5.5825 -4.0371 10.4710 47 1 4.7720 -5.4027 9.6611 48 1 3.7716 -3.5946 12.5637 49 1 3.2498 -2.9362 7.1604 50 1 3.2520 -4.6853 7.5040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025497178.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:01 Heat of formation + Delta-G solvation = 8.663663 kcal Electronic energy + Delta-G solvation = -29421.257101 eV Core-core repulsion = 25451.012146 eV Total energy + Delta-G solvation = -3970.244955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.21556 -41.18697 -39.55161 -37.03923 -36.77967 -35.17772 -34.67789 -32.62314 -32.29293 -31.63107 -29.57083 -28.01407 -27.25416 -26.61002 -24.94194 -24.22054 -23.93682 -23.14498 -21.92301 -20.93742 -20.09123 -18.90037 -18.73507 -18.30836 -17.96478 -17.13670 -16.86806 -16.26724 -16.12064 -15.83713 -15.74068 -15.44810 -15.10463 -14.94946 -14.75055 -14.51001 -14.13494 -14.10906 -14.00654 -13.79202 -13.36622 -13.07706 -13.01315 -12.89434 -12.78317 -12.73984 -12.35854 -12.34390 -12.16197 -12.11380 -11.99047 -11.79927 -11.77807 -11.61524 -11.58524 -11.48650 -11.21267 -11.09917 -10.53859 -10.51168 -10.27506 -8.67219 -7.88813 -5.34163 -0.00977 0.61871 1.44633 1.46804 1.53517 1.75365 1.97535 2.00359 2.49139 2.82853 3.25389 3.34691 3.53535 3.81510 3.85530 3.93451 3.98990 3.99765 4.06751 4.15408 4.31165 4.32049 4.35183 4.42939 4.56437 4.60364 4.64630 4.80250 4.82498 4.83646 4.85485 4.90170 4.98131 4.98854 5.00593 5.09798 5.15167 5.15803 5.25138 5.31055 5.35071 5.38922 5.40911 5.44486 5.54804 5.65466 5.77732 6.20926 6.37696 6.81431 6.99862 7.13804 7.85067 8.36391 9.16931 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.002777 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.508208 B =10080.410270 C =11832.591912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.009 4.009 3 C -0.152 4.152 4 C -0.012 4.012 5 C -0.189 4.189 6 C -0.047 4.047 7 C 0.599 3.401 8 O -0.551 6.551 9 N -0.703 5.703 10 C 0.157 3.843 11 H 0.091 0.909 12 C -0.160 4.160 13 C -0.098 4.098 14 H 0.063 0.937 15 C -0.096 4.096 16 C -0.132 4.132 17 C 0.174 3.826 18 N -0.609 5.609 19 C -0.265 4.265 20 H 0.062 0.938 21 C -0.048 4.048 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.151 3.849 28 N -0.352 5.352 29 O 0.127 5.873 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.197 0.803 38 H 0.408 0.592 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.051 0.949 47 H -0.002 1.002 48 H 0.250 0.750 49 H 0.043 0.957 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 4.880 -25.838 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 C -0.209 4.209 4 C -0.076 4.076 5 C -0.212 4.212 6 C -0.205 4.205 7 C 0.384 3.616 8 O -0.428 6.428 9 N -0.354 5.354 10 C 0.053 3.947 11 H 0.109 0.891 12 C -0.218 4.218 13 C -0.119 4.119 14 H 0.081 0.919 15 C -0.134 4.134 16 C -0.171 4.171 17 C 0.048 3.952 18 N -0.332 5.332 19 C -0.395 4.395 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.206 1.206 27 C 0.026 3.974 28 N -0.051 5.051 29 O 0.050 5.950 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.214 0.786 38 H 0.244 0.756 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.017 0.983 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.462 4.484 -24.797 25.319 hybrid contribution -0.145 0.563 0.879 1.054 sum -2.607 5.047 -23.918 24.583 Atomic orbital electron populations 1.21924 0.92312 1.02828 1.03832 1.20091 0.97307 0.96430 0.88989 1.21926 1.01495 0.93657 1.03833 1.25205 0.98582 0.96554 0.87219 1.22683 1.03286 0.99481 0.95732 1.23553 1.03990 0.98714 0.94267 1.17060 0.79523 0.82672 0.82391 1.90748 1.47070 1.42832 1.62176 1.46128 1.52096 1.31358 1.05778 1.21046 0.94457 0.86142 0.93067 0.89114 1.22218 1.00496 0.97277 1.01784 1.21744 0.97952 0.99593 0.92594 0.91876 1.21414 0.98786 0.97385 0.95800 1.22019 0.98089 1.00486 0.96460 1.20638 0.88358 0.90911 0.95256 1.44264 1.49574 1.27201 1.12159 1.19433 1.38751 0.91781 0.89565 0.91992 1.25759 1.01011 0.99341 0.98258 1.70172 1.55233 1.25115 1.07305 0.85392 0.78272 0.79862 0.77238 1.20172 1.21865 1.20553 1.21094 0.93811 0.97785 0.84757 1.74255 1.10008 1.03072 1.17794 1.84744 1.53679 1.42019 1.14598 0.92527 0.88990 0.92393 0.85309 0.88990 0.92525 0.92412 0.78564 0.75616 0.89804 0.92448 0.92673 0.91433 0.90337 0.90893 0.93430 0.93101 0.98348 0.94077 0.93883 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.18 71.98 0.66 -0.46 16 2 C -0.01 -0.08 3.34 -11.54 -0.04 -0.11 16 3 C -0.15 -1.13 9.17 71.98 0.66 -0.47 16 4 C -0.01 -0.21 5.98 25.01 0.15 -0.06 16 5 C -0.19 -3.81 10.91 22.60 0.25 -3.57 16 6 C -0.05 -1.28 7.19 42.96 0.31 -0.97 16 7 C 0.60 18.26 7.81 86.93 0.68 18.94 16 8 O -0.55 -18.71 16.61 -3.68 -0.06 -18.77 16 9 N -0.70 -20.99 5.01 -444.95 -2.23 -23.22 16 10 C 0.16 4.56 2.35 44.99 0.11 4.67 16 11 H 0.09 2.62 7.58 -2.39 -0.02 2.60 16 12 C -0.16 -4.39 8.76 71.98 0.63 -3.76 16 13 C -0.10 -3.25 2.27 -10.72 -0.02 -3.28 16 14 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.10 -2.98 4.89 30.62 0.15 -2.83 16 16 C -0.13 -4.87 6.08 30.67 0.19 -4.68 16 17 C 0.17 8.42 5.30 86.36 0.46 8.87 16 18 N -0.61 -30.74 2.99 -699.07 -2.09 -32.83 16 19 C -0.27 -14.80 9.58 84.04 0.81 -14.00 16 20 H 0.06 3.40 7.88 -2.91 -0.02 3.38 16 21 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 22 N -0.93 -55.64 11.20 21.65 0.24 -55.40 16 23 Si 0.96 45.53 29.59 68.60 2.03 47.56 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 C 0.15 6.19 5.26 86.36 0.45 6.64 16 28 N -0.35 -9.67 11.84 -49.51 -0.59 -10.25 16 29 O 0.13 2.85 11.18 71.84 0.80 3.66 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.13 0.53 8.12 -2.39 -0.02 0.51 16 34 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.41 12.46 7.04 -92.71 -0.65 11.81 16 39 H 0.08 2.08 6.60 -2.39 -0.02 2.07 16 40 H 0.06 1.69 6.23 -2.39 -0.01 1.67 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 2.03 6.63 -2.39 -0.02 2.02 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 47 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 48 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.04 1.76 6.75 -2.38 -0.02 1.75 16 50 H 0.03 1.05 6.06 -2.39 -0.01 1.03 16 Total: -1.00 -69.31 395.76 4.24 -65.06 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.29 Total: 21.57 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.85 Total: 2.62 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -4.67 Total: -121.70 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.74 Total: -15.11 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.31 4.24 -65.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025497178.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.725 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds