Wall clock time and date at job start Tue Mar 31 2020 19:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47083 * 2 1 4 4 C 1.50697 * 109.47606 * 120.00216 * 2 1 3 5 5 C 1.35317 * 126.66784 * 120.31505 * 4 2 1 6 6 C 1.42274 * 103.92188 * 180.08379 * 5 4 2 7 7 C 1.48320 * 126.93933 * 179.89111 * 6 5 4 8 8 O 1.21496 * 120.00304 * 359.70801 * 7 6 5 9 9 N 1.34779 * 120.00489 * 179.71064 * 7 6 5 10 10 C 1.46491 * 120.00617 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.47190 * 324.99971 * 10 9 7 12 12 C 1.52999 * 109.47576 * 84.99765 * 10 9 7 13 13 C 1.53000 * 109.47358 * 205.00299 * 10 9 7 14 14 H 1.08999 * 109.49739 * 299.93030 * 13 10 9 15 15 C 1.53042 * 109.52292 * 179.85175 * 13 10 9 16 16 C 1.53046 * 109.53636 * 178.66180 * 15 13 10 17 17 C 1.52762 * 109.37765 * 61.24308 * 16 15 13 18 18 N 1.46926 * 109.01244 * 305.58424 * 17 16 15 19 19 C 1.36935 * 120.63260 * 233.59040 * 18 17 16 20 20 H 1.07998 * 119.99964 * 152.10930 * 19 18 17 21 21 C 1.38818 * 119.99962 * 332.10221 * 19 18 17 22 22 N 1.31621 * 119.99780 * 335.26864 * 21 19 18 23 23 Si 1.86796 * 119.99944 * 154.99519 * 21 19 18 24 24 H 1.48508 * 109.47191 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47528 * 119.99834 * 23 21 19 26 26 H 1.48507 * 109.46927 * 240.00155 * 23 21 19 27 27 C 1.46923 * 118.73306 * 53.31086 * 18 17 16 28 28 N 1.30987 * 106.11869 * 359.62974 * 6 5 4 29 29 O 1.20906 * 111.44674 * 0.24140 * 28 6 5 30 30 H 1.08995 * 109.47129 * 60.00127 * 1 2 3 31 31 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47037 * 299.99571 * 1 2 3 33 33 H 1.09002 * 109.47037 * 240.00429 * 2 1 3 34 34 H 1.08994 * 109.47505 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47072 * 299.99987 * 3 2 1 36 36 H 1.09000 * 109.47096 * 59.99836 * 3 2 1 37 37 H 1.07997 * 128.03646 * 359.96230 * 5 4 2 38 38 H 0.97007 * 119.99532 * 0.02562 * 9 7 6 39 39 H 1.09007 * 109.46693 * 59.99901 * 12 10 9 40 40 H 1.08992 * 109.47479 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.47130 * 300.00933 * 12 10 9 42 42 H 1.08990 * 109.46523 * 298.68262 * 15 13 10 43 43 H 1.09002 * 109.46336 * 58.64808 * 15 13 10 44 44 H 1.08999 * 109.49604 * 181.31494 * 16 15 13 45 45 H 1.09000 * 109.50123 * 301.38654 * 16 15 13 46 46 H 1.09007 * 109.50585 * 185.70374 * 17 16 15 47 47 H 1.09001 * 109.43315 * 65.42700 * 17 16 15 48 48 H 0.97000 * 120.00039 * 353.97832 * 22 21 19 49 49 H 1.08999 * 109.59145 * 66.43478 * 27 18 17 50 50 H 1.09001 * 109.58720 * 186.85599 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 2.8184 -1.8115 1.2634 6 6 2.9925 -2.0662 2.6523 7 6 3.7731 -3.1683 3.2654 8 8 4.3438 -3.9750 2.5585 9 7 3.8494 -3.2751 4.6068 10 6 4.6199 -4.3639 5.2124 11 1 4.5305 -5.2587 4.5963 12 6 6.0913 -3.9557 5.3081 13 6 4.0788 -4.6536 6.6139 14 1 4.1691 -3.7595 7.2307 15 6 4.8807 -5.7935 7.2462 16 6 4.3615 -6.0612 8.6608 17 6 2.8946 -6.4820 8.5911 18 7 2.1382 -5.4610 7.8535 19 6 1.0223 -4.8874 8.4020 20 1 0.7351 -3.8858 8.1183 21 6 0.2602 -5.5935 9.3227 22 7 0.2799 -6.9096 9.3218 23 14 -0.7872 -4.6759 10.5677 24 1 -0.6300 -3.2132 10.3646 25 1 -2.2127 -5.0507 10.3875 26 1 -0.3510 -5.0341 11.9414 27 6 2.6056 -5.0626 6.5188 28 7 2.3287 -1.1276 3.2802 29 8 1.7928 -0.3708 2.5044 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.2187 -2.3686 0.4293 38 1 3.3934 -2.6313 5.1713 39 1 6.1808 -3.0609 5.9241 40 1 6.6647 -4.7660 5.7582 41 1 6.4768 -3.7493 4.3096 42 1 4.7699 -6.6940 6.6423 43 1 5.9335 -5.5148 7.2926 44 1 4.9482 -6.8573 9.1190 45 1 4.4496 -5.1540 9.2585 46 1 2.4943 -6.5751 9.6007 47 1 2.8160 -7.4389 8.0751 48 1 0.7563 -7.3871 8.6248 49 1 2.5029 -5.9013 5.8302 50 1 2.0146 -4.2193 6.1614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025497180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:09 Heat of formation + Delta-G solvation = 22.056576 kcal Electronic energy + Delta-G solvation = -29506.020118 eV Core-core repulsion = 25536.355923 eV Total energy + Delta-G solvation = -3969.664195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.28088 -39.92535 -38.08607 -36.49413 -35.48769 -34.17185 -33.19255 -31.31273 -30.65020 -30.48521 -28.48350 -27.63814 -25.61861 -24.92024 -23.52548 -23.26729 -22.30090 -21.97626 -20.48360 -20.03934 -19.00729 -17.95143 -17.60640 -17.33672 -16.88346 -16.09151 -15.48923 -15.01705 -14.78111 -14.52477 -14.25086 -13.98124 -13.79937 -13.71322 -13.68919 -13.62960 -13.39136 -12.88925 -12.66900 -12.64237 -12.36803 -12.07776 -11.91004 -11.84531 -11.74762 -11.65201 -11.31523 -11.14642 -10.91184 -10.66148 -10.62342 -10.36393 -10.34212 -10.21527 -10.07163 -9.89647 -9.77722 -9.70911 -9.29171 -9.04699 -8.35190 -6.87381 -6.05471 -3.22158 0.96560 1.46696 2.67099 2.92615 3.10996 3.51359 3.54129 3.67679 3.81135 4.09361 4.41499 4.57014 4.57269 4.70931 4.83321 4.86605 5.06671 5.14568 5.16147 5.17522 5.29650 5.32218 5.35635 5.40478 5.45781 5.48865 5.50043 5.64774 5.65999 5.70179 5.75315 5.80091 5.90672 5.95374 6.02038 6.17145 6.19739 6.31136 6.41573 6.48998 6.52534 6.69286 6.72217 6.82551 7.11550 7.22045 7.38124 7.83649 8.01488 8.06381 8.58992 9.13019 9.85909 10.30561 11.22737 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.002944 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.961936 B = 9508.260145 C =11391.945228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.011 4.011 3 C -0.151 4.151 4 C -0.029 4.029 5 C -0.182 4.182 6 C -0.024 4.024 7 C 0.599 3.401 8 O -0.528 6.528 9 N -0.701 5.701 10 C 0.147 3.853 11 H 0.089 0.911 12 C -0.162 4.162 13 C -0.111 4.111 14 H 0.073 0.927 15 C -0.101 4.101 16 C -0.136 4.136 17 C 0.148 3.852 18 N -0.598 5.598 19 C -0.348 4.348 20 H 0.055 0.945 21 C -0.025 4.025 22 N -0.917 5.917 23 Si 1.068 2.932 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.157 3.843 28 N -0.328 5.328 29 O 0.127 5.873 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.180 0.820 38 H 0.408 0.592 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.015 0.985 48 H 0.269 0.731 49 H 0.015 0.985 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 13.844 -17.791 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 C -0.209 4.209 4 C -0.092 4.092 5 C -0.204 4.204 6 C -0.183 4.183 7 C 0.383 3.617 8 O -0.403 6.403 9 N -0.352 5.352 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.220 4.220 13 C -0.132 4.132 14 H 0.092 0.908 15 C -0.139 4.139 16 C -0.175 4.175 17 C 0.022 3.978 18 N -0.321 5.321 19 C -0.478 4.478 20 H 0.073 0.927 21 C -0.226 4.226 22 N -0.557 5.557 23 Si 0.898 3.102 24 H -0.218 1.218 25 H -0.221 1.221 26 H -0.217 1.217 27 C 0.031 3.969 28 N -0.028 5.028 29 O 0.050 5.950 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.197 0.803 38 H 0.243 0.757 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.033 0.967 48 H 0.080 0.920 49 H 0.033 0.967 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.532 13.293 -15.617 21.524 hybrid contribution 1.022 0.130 -1.786 2.062 sum 7.554 13.423 -17.403 23.241 Atomic orbital electron populations 1.21911 0.92900 1.03012 1.03172 1.19820 0.96931 0.96119 0.90173 1.21905 1.01660 0.94150 1.03168 1.24502 1.00060 0.97387 0.87278 1.22422 1.02760 0.98658 0.96559 1.23544 1.03168 0.98682 0.92899 1.16854 0.79707 0.82632 0.82551 1.90780 1.46169 1.41530 1.61786 1.45992 1.52105 1.31426 1.05683 1.21149 0.90265 0.89432 0.94853 0.89294 1.22209 0.95810 1.02038 1.01938 1.21972 0.98694 0.99517 0.93033 0.90818 1.21442 0.97809 0.97501 0.97130 1.21986 0.99198 1.00767 0.95594 1.20884 0.88533 0.90418 0.97934 1.44097 1.28329 1.46864 1.12847 1.20008 1.03574 0.97706 1.26462 0.92687 1.25836 0.98311 0.96352 1.02149 1.70712 1.41358 1.06833 1.36823 0.83488 0.75839 0.74393 0.76441 1.21835 1.22124 1.21667 1.20852 0.90782 0.97265 0.88046 1.74228 1.09079 1.02678 1.16789 1.84770 1.54161 1.42492 1.13555 0.91168 0.91888 0.91562 0.87721 0.92042 0.91172 0.91608 0.80304 0.75688 0.92497 0.90979 0.92511 0.92503 0.92737 0.92904 0.92396 0.90292 0.96682 0.91956 0.96722 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.18 37.16 0.34 -0.49 16 2 C -0.01 -0.06 3.34 -91.77 -0.31 -0.37 16 3 C -0.15 -0.74 9.18 37.16 0.34 -0.40 16 4 C -0.03 -0.27 5.98 -35.35 -0.21 -0.49 16 5 C -0.18 -2.02 10.91 -39.07 -0.43 -2.44 16 6 C -0.02 -0.33 7.19 -82.53 -0.59 -0.92 16 7 C 0.60 9.41 7.81 -12.11 -0.09 9.32 16 8 O -0.53 -9.38 16.61 5.37 0.09 -9.29 16 9 N -0.70 -10.54 4.47 -54.60 -0.24 -10.78 16 10 C 0.15 2.21 2.16 -67.94 -0.15 2.06 16 11 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 12 C -0.16 -2.08 9.14 37.16 0.34 -1.74 16 13 C -0.11 -1.89 1.97 -90.50 -0.18 -2.07 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.10 -1.64 4.86 -26.69 -0.13 -1.77 16 16 C -0.14 -2.54 6.07 -26.83 -0.16 -2.71 16 17 C 0.15 3.49 4.66 -3.93 -0.02 3.47 16 18 N -0.60 -15.08 2.86 -172.58 -0.49 -15.57 16 19 C -0.35 -9.82 9.49 -15.06 -0.14 -9.96 16 20 H 0.06 1.57 7.94 -52.49 -0.42 1.15 16 21 C -0.02 -0.70 4.69 -17.43 -0.08 -0.78 16 22 N -0.92 -27.76 12.40 55.49 0.69 -27.07 16 23 Si 1.07 25.62 29.99 -169.99 -5.10 20.52 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.16 3.35 5.56 -3.71 -0.02 3.33 16 28 N -0.33 -4.55 11.84 33.30 0.39 -4.16 16 29 O 0.13 1.48 11.18 17.24 0.19 1.68 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.41 5.99 8.17 -40.82 -0.33 5.66 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.75 6.37 -51.93 -0.33 0.42 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.08 2.09 6.30 -51.92 -0.33 1.76 16 47 H 0.02 0.37 7.87 -51.93 -0.41 -0.04 16 48 H 0.27 8.24 6.71 -40.82 -0.27 7.97 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 1.14 7.43 -51.93 -0.39 0.75 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -32.75 399.65 -8.28 -41.02 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.34 Total: 3.59 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.49 Total: -5.96 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.35 Total: -57.58 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.28 Total: -7.61 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.10 Total: 20.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.75 -8.28 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025497180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.081 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds